Click here to switch to the map view.

The map label for this gene is yddW [H]

Identifier: 75908736

GI number: 75908736

Start: 3118508

End: 3119770

Strand: Direct

Name: yddW [H]

Synonym: Ava_2522

Alternate gene names: 75908736

Gene position: 3118508-3119770 (Clockwise)

Preceding gene: 75908735

Following gene: 75908737

Centisome position: 48.99

GC content: 39.75

Gene sequence:

>1263_bases
ATGACTCGGTTGGCAAAATTGTTTTTTTCGTACTTACTGTTTATACAATTAATATTGTATTTAACAGGATTATCTATCCC
TTCATTTTCTAATTATGAACAAAAAAGCAATCTACCGACTACAACAGAAATTCGTGGAGTTTGGCTGACTAATGTTGCTA
GCGGTGTACTTTTTGTACCCTGGGGTATTAATCGTGCTATTGACCAACTATCTGCACTAAACTTTAATACAATTTATCCT
GTAGTTTGGAACAGGGGCTATACCTTTTATAAAAGTGGTACAGCTAAATCTGTTACGGGTGCTGATACTCAACCGCTGCT
GAATTTTGTCCACGGGGGACAGGATGTTTTAGCAAAGATAGTTGCACTTGCTAAACCGAAAAATTTAAGCGTTATTCCCT
GGTTTGAATATGGTTTTATGGCACCGCCCGATTCAGTGATAGCAAAACGACATCCTGAGTGGTTAACAAACGGTCAAGGT
GGAGTCGTATCTATTAGTGAAATGTTACCAGAAGAAAGCGACACCGACCCTACAAATAAGTTAGTTTGGCTCAATCCTTT
ACACCCAGAGGTACAGCAGTTTATCCTATCGCTAATTACAGAAGTTGTTACTAATTATCATATTGATGGCATTCAAATTG
ATGATCATTTTGGAATGCCAGTACAGTTTGGCTATGATCCATATACAACTGAACTTTATCAAAAAGAACATCAAGGTAAA
AGCCCCCCTCGCAATCATTTTGATGGGGAGTGGATGAAGTGGCGTGCTAACAAGATCACTCGTTTCATGACACAAGTTTC
TCAAGTAGTGAAAGAGATTAAACCCAATGTTAAGGTATCTCTTTCTCCTAATTCGCAAGCTTTTGCTTACAGGTATTATT
TGCAAGATTGGGCAAGTTGGATAAAAACAGGTTTAGTGGATGAATTGATTTTGCAGGTGTATCGCAATGATAAAAGTAGC
TTTGTGTACGAATTAGAACAGCCTGCTGTCAAGCTTGCGCGTACTCAAATTCCCGTAGCGATTGGCATATCCACAGGAAC
TTTGCGAAGTCCTGTTAAGATTGAGCAAATTAGAGAACAAGTACAAGCTGTACGCGATCGCTCTTTTTTTGGTATCTCTT
TCTTTTACTGGGAAAGTCTGTGGGGTTACATCACCCCAGAATCACCCCCATACCGCCGTCAAATATTTCAACAAATGTTT
ACTGCTAAAGCCGCTAGGCCATTAGCACCAGTGAGGGAAAGCAAAAGGCAGGGTGAAGGGTAA

Upstream 100 bases:

>100_bases
ATTATTGATATATAGATGACGTTATTCATCAAGAGTTTGAGGGTATACTAACTTATTCCGTAATTCTTATCCCCTCTTCC
CGGCGAAGTTAGACTTTCTC

Downstream 100 bases:

>100_bases
AACGGCTCTTTCCTTGTCCCTAATCCCCAATTATCCCCATGAAAACACCGTTAAAATTTATCTTGCTGTGGACTATAGCT
ACTTTTGGTGGGTTTTTGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 419

Protein sequence:

>420_residues
MTRLAKLFFSYLLFIQLILYLTGLSIPSFSNYEQKSNLPTTTEIRGVWLTNVASGVLFVPWGINRAIDQLSALNFNTIYP
VVWNRGYTFYKSGTAKSVTGADTQPLLNFVHGGQDVLAKIVALAKPKNLSVIPWFEYGFMAPPDSVIAKRHPEWLTNGQG
GVVSISEMLPEESDTDPTNKLVWLNPLHPEVQQFILSLITEVVTNYHIDGIQIDDHFGMPVQFGYDPYTTELYQKEHQGK
SPPRNHFDGEWMKWRANKITRFMTQVSQVVKEIKPNVKVSLSPNSQAFAYRYYLQDWASWIKTGLVDELILQVYRNDKSS
FVYELEQPAVKLARTQIPVAIGISTGTLRSPVKIEQIREQVQAVRDRSFFGISFFYWESLWGYITPESPPYRRQIFQQMF
TAKAARPLAPVRESKRQGEG

Sequences:

>Translated_420_residues
MTRLAKLFFSYLLFIQLILYLTGLSIPSFSNYEQKSNLPTTTEIRGVWLTNVASGVLFVPWGINRAIDQLSALNFNTIYP
VVWNRGYTFYKSGTAKSVTGADTQPLLNFVHGGQDVLAKIVALAKPKNLSVIPWFEYGFMAPPDSVIAKRHPEWLTNGQG
GVVSISEMLPEESDTDPTNKLVWLNPLHPEVQQFILSLITEVVTNYHIDGIQIDDHFGMPVQFGYDPYTTELYQKEHQGK
SPPRNHFDGEWMKWRANKITRFMTQVSQVVKEIKPNVKVSLSPNSQAFAYRYYLQDWASWIKTGLVDELILQVYRNDKSS
FVYELEQPAVKLARTQIPVAIGISTGTLRSPVKIEQIREQVQAVRDRSFFGISFFYWESLWGYITPESPPYRRQIFQQMF
TAKAARPLAPVRESKRQGEG
>Mature_419_residues
TRLAKLFFSYLLFIQLILYLTGLSIPSFSNYEQKSNLPTTTEIRGVWLTNVASGVLFVPWGINRAIDQLSALNFNTIYPV
VWNRGYTFYKSGTAKSVTGADTQPLLNFVHGGQDVLAKIVALAKPKNLSVIPWFEYGFMAPPDSVIAKRHPEWLTNGQGG
VVSISEMLPEESDTDPTNKLVWLNPLHPEVQQFILSLITEVVTNYHIDGIQIDDHFGMPVQFGYDPYTTELYQKEHQGKS
PPRNHFDGEWMKWRANKITRFMTQVSQVVKEIKPNVKVSLSPNSQAFAYRYYLQDWASWIKTGLVDELILQVYRNDKSSF
VYELEQPAVKLARTQIPVAIGISTGTLRSPVKIEQIREQVQAVRDRSFFGISFFYWESLWGYITPESPPYRRQIFQQMFT
AKAARPLAPVRESKRQGEG

Specific function: Unknown

COG id: COG1649

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0748 family [H]

Homologues:

Organism=Escherichia coli, GI1787767, Length=194, Percent_Identity=29.8969072164948, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003790
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF02638 DUF187 [H]

EC number: NA

Molecular weight: Translated: 48048; Mature: 47916

Theoretical pI: Translated: 9.42; Mature: 9.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLAKLFFSYLLFIQLILYLTGLSIPSFSNYEQKSNLPTTTEIRGVWLTNVASGVLFVP
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCHHCCEEEHHHHCCCEEEEC
WGINRAIDQLSALNFNTIYPVVWNRGYTFYKSGTAKSVTGADTQPLLNFVHGGQDVLAKI
CCHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHH
VALAKPKNLSVIPWFEYGFMAPPDSVIAKRHPEWLTNGQGGVVSISEMLPEESDTDPTNK
HHHCCCCCCEEEEEHHCCCCCCCHHHHHHCCCHHHCCCCCCEEEHHHHCCCCCCCCCCCE
LVWLNPLHPEVQQFILSLITEVVTNYHIDGIQIDDHFGMPVQFGYDPYTTELYQKEHQGK
EEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCHHHHHHHHHHCCC
SPPRNHFDGEWMKWRANKITRFMTQVSQVVKEIKPNVKVSLSPNSQAFAYRYYLQDWASW
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH
IKTGLVDELILQVYRNDKSSFVYELEQPAVKLARTQIPVAIGISTGTLRSPVKIEQIREQ
HHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHH
VQAVRDRSFFGISFFYWESLWGYITPESPPYRRQIFQQMFTAKAARPLAPVRESKRQGEG
HHHHHCCCCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
TRLAKLFFSYLLFIQLILYLTGLSIPSFSNYEQKSNLPTTTEIRGVWLTNVASGVLFVP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCHHCCEEEHHHHCCCEEEEC
WGINRAIDQLSALNFNTIYPVVWNRGYTFYKSGTAKSVTGADTQPLLNFVHGGQDVLAKI
CCHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHH
VALAKPKNLSVIPWFEYGFMAPPDSVIAKRHPEWLTNGQGGVVSISEMLPEESDTDPTNK
HHHCCCCCCEEEEEHHCCCCCCCHHHHHHCCCHHHCCCCCCEEEHHHHCCCCCCCCCCCE
LVWLNPLHPEVQQFILSLITEVVTNYHIDGIQIDDHFGMPVQFGYDPYTTELYQKEHQGK
EEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCHHHHHHHHHHCCC
SPPRNHFDGEWMKWRANKITRFMTQVSQVVKEIKPNVKVSLSPNSQAFAYRYYLQDWASW
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH
IKTGLVDELILQVYRNDKSSFVYELEQPAVKLARTQIPVAIGISTGTLRSPVKIEQIREQ
HHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHH
VQAVRDRSFFGISFFYWESLWGYITPESPPYRRQIFQQMFTAKAARPLAPVRESKRQGEG
HHHHHCCCCEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]