| Definition | Anabaena variabilis ATCC 29413 chromosome, complete genome. |
|---|---|
| Accession | NC_007413 |
| Length | 6,365,727 |
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The map label for this gene is recJ [H]
Identifier: 75908589
GI number: 75908589
Start: 2951943
End: 2954135
Strand: Direct
Name: recJ [H]
Synonym: Ava_2372
Alternate gene names: 75908589
Gene position: 2951943-2954135 (Clockwise)
Preceding gene: 75908585
Following gene: 75908590
Centisome position: 46.37
GC content: 42.86
Gene sequence:
>2193_bases ATGCTAGACCGACCTCCTACGGAACTATCAAAACCTCGCAGGCGCTTACCTAATCAGCGTTGGCAAATTCACCTACAAAA AACAGATTTAGCCCAAAAACTGGCAGATGCGGCAAATCTTTCGCCTATTGTTTGTCAATTGCTGATTAATCGTGGTATTG AAACACCAGAACAAGCACAAGCATTTTTAGAACCTGAATCCTTAAATTTACCTTCGCCATTAACAGAATTTCCAGATTTG GCGATGAGTGTGGAGTTATTACAAGAGGCGATCGCTTCCCAAAGTAAAATAGCAATTTGCGGTGATTATGATGCAGATGG AATGACTAGCACCGCTTTACTTTTGCGTAGTCTCCGCAGTTTAGGCGCTCAAGTAGATTATGCTATTCCCAGCCGGATGC ACGAAGGTTATGGTATCAATAAGCGGATTGTAGAAGAATTTCATAGTGAAGGTGTCAAGTTAATCCTCACTGTTGATAAT GGGATTTCTGCATTTGAACCAATTGCTAGAGCCAAAGAACTGGGTCTCAATGTCATTATCACCGACCATCACGACATTCC CCAAAAACTACCCCCAGCCGATGCAATCCTCAACCCAAAACTCATCGCTGAATCTTCACCATATCGGGGTGTAGCTGGTG TTGGCGTTGCTTATATTTTGGCAGTATCTCTGGCACAAAAGCTAGACAAAACCAAAGGCTTAATTCAGCCGATGTTAGCA CTGTTCACCTTGGGAACGATCGCCGATTTAGCTCCCTTAAGTGGTGTCAATCGTCGTTGGGTAAAACGTGGTTTAAAGCT ATTACCTAAATCTCAATTACCAGGAGTCCAAGCATTAATCCAAGTTGCAGGAGTACAAGCGATCAATTCAAAATTCAAAA TACCCTTCGGGAACGCCAAGGGCGAACAAAATTCAAAATTAATCAATAATGACTCTAATAAGGATTTAACTTATGGTGTC CCCAATCCCCAATCCCCAGTCCCCAATCCCCAATCCCTCAAACCAGAAGATATTGGCTTTCGTTTAGGGCCGCGTATCAA TGCAGTTGGTAGGATTGGCGACCCTTTGACGGTAATTGAATTACTGACAACAGATGATGAGGGGTTGGCGTTAGAACGCG CTATGCAGTGCGAACAGGCTAATACTAGCCGTCAGCAAATGTGCGAAGAAATTGAACAACAAGCGATCGCCCACGTAGAA GATTTGTATGCAACATCTCTACAACAAGACCGGGTATTGGTTGTGATCCAACCCAATTGGCATCATGGTGTAATTGGTAT TGTCGCCTCCCGCTTAGTGGAACGTTACGGTGTTCCCGTCTTTATTGGTACTTATGAAGATGAAGAACTAATTCGCGGTT CGGCTAGGAGTATCCCGGAATTTAATGTATTTGAGGCTTTAGAATATTGTCACGACTTGTTGGGTAAATATGGTGGTCAC AAAGCCGCCGGCGGATTTTCTTTCCCCGCTACTAATTTACAGAAGTTGCGATCGCGTCTGTCTGAGTTTGCTAATCAATG TTTGCAACCCCAACACCTCAAGCCCTTACTGCAAATTGATGTTGAGGCTAACTTCAATCAAATCCATCAAGAACTGTATC AACAGCTAAACTCTCTCCATCCTTGCGGTATTGATAACCCTGATCCGGTTTTCTGGACACCCAATGTTCAAGTTGTAGAA CAACAAATAGTCGGCAAAGGACATATTAAAGTCACACTCAGCCAAACTATCGAAGGTCAACCATATCAGTTTAAGGCGAT CGCTTGGCGTTGGCGTGATTATTACCCTTTACCACCAAGATTAGATATAGCTTACAAATTGCGCGAAAATAACTTTAATG GCAATACCAGCCTGGAGTTGGAATTATTAGGTGTAAGACTGGCTCAGAAACAACTTGAGGCGCAGTCCCACCAGTTACAA CTTTTTTATCAAGCTTCTTCTAAACCTTTAAGAACCGCCTTCAAGTACAATCAACGTCAATATACTTGCGGAGTCTATCA AAATAATTCTCTTCCCGAACTCAGAATTAAAAACTCAGATGGCAAAGTTCTAGTTATGCAGCCGGGAAATACAATTGGGT TACTAGGAACTAGTCGTGAAGATGCCCTAGAAATCGACTTAACTTTACCCCAATATGATTCTATTGTTCAAGCTGCTATC CAAGCATTGTCAATGCTGAGTGCTGAGTGCTGA
Upstream 100 bases:
>100_bases CGTTGCCCACCGTATCATGGGTTTTGGTGGGCTAGGTAGGTTTCAACTATTACCGATTACCCATTACCCATTACCAAGCC TCTCAAATTGTAATAGCTAA
Downstream 100 bases:
>100_bases GTATAAATTTCACCATCACTCAGCACTCATTAGTCTTATAGGTTGCCGTTGCGGAATGCCAGCACGAAAATCACAGCAGG CCCAGCAATGATTATTAGTG
Product: exonuclease RecJ
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 730; Mature: 730
Protein sequence:
>730_residues MLDRPPTELSKPRRRLPNQRWQIHLQKTDLAQKLADAANLSPIVCQLLINRGIETPEQAQAFLEPESLNLPSPLTEFPDL AMSVELLQEAIASQSKIAICGDYDADGMTSTALLLRSLRSLGAQVDYAIPSRMHEGYGINKRIVEEFHSEGVKLILTVDN GISAFEPIARAKELGLNVIITDHHDIPQKLPPADAILNPKLIAESSPYRGVAGVGVAYILAVSLAQKLDKTKGLIQPMLA LFTLGTIADLAPLSGVNRRWVKRGLKLLPKSQLPGVQALIQVAGVQAINSKFKIPFGNAKGEQNSKLINNDSNKDLTYGV PNPQSPVPNPQSLKPEDIGFRLGPRINAVGRIGDPLTVIELLTTDDEGLALERAMQCEQANTSRQQMCEEIEQQAIAHVE DLYATSLQQDRVLVVIQPNWHHGVIGIVASRLVERYGVPVFIGTYEDEELIRGSARSIPEFNVFEALEYCHDLLGKYGGH KAAGGFSFPATNLQKLRSRLSEFANQCLQPQHLKPLLQIDVEANFNQIHQELYQQLNSLHPCGIDNPDPVFWTPNVQVVE QQIVGKGHIKVTLSQTIEGQPYQFKAIAWRWRDYYPLPPRLDIAYKLRENNFNGNTSLELELLGVRLAQKQLEAQSHQLQ LFYQASSKPLRTAFKYNQRQYTCGVYQNNSLPELRIKNSDGKVLVMQPGNTIGLLGTSREDALEIDLTLPQYDSIVQAAI QALSMLSAEC
Sequences:
>Translated_730_residues MLDRPPTELSKPRRRLPNQRWQIHLQKTDLAQKLADAANLSPIVCQLLINRGIETPEQAQAFLEPESLNLPSPLTEFPDL AMSVELLQEAIASQSKIAICGDYDADGMTSTALLLRSLRSLGAQVDYAIPSRMHEGYGINKRIVEEFHSEGVKLILTVDN GISAFEPIARAKELGLNVIITDHHDIPQKLPPADAILNPKLIAESSPYRGVAGVGVAYILAVSLAQKLDKTKGLIQPMLA LFTLGTIADLAPLSGVNRRWVKRGLKLLPKSQLPGVQALIQVAGVQAINSKFKIPFGNAKGEQNSKLINNDSNKDLTYGV PNPQSPVPNPQSLKPEDIGFRLGPRINAVGRIGDPLTVIELLTTDDEGLALERAMQCEQANTSRQQMCEEIEQQAIAHVE DLYATSLQQDRVLVVIQPNWHHGVIGIVASRLVERYGVPVFIGTYEDEELIRGSARSIPEFNVFEALEYCHDLLGKYGGH KAAGGFSFPATNLQKLRSRLSEFANQCLQPQHLKPLLQIDVEANFNQIHQELYQQLNSLHPCGIDNPDPVFWTPNVQVVE QQIVGKGHIKVTLSQTIEGQPYQFKAIAWRWRDYYPLPPRLDIAYKLRENNFNGNTSLELELLGVRLAQKQLEAQSHQLQ LFYQASSKPLRTAFKYNQRQYTCGVYQNNSLPELRIKNSDGKVLVMQPGNTIGLLGTSREDALEIDLTLPQYDSIVQAAI QALSMLSAEC >Mature_730_residues MLDRPPTELSKPRRRLPNQRWQIHLQKTDLAQKLADAANLSPIVCQLLINRGIETPEQAQAFLEPESLNLPSPLTEFPDL AMSVELLQEAIASQSKIAICGDYDADGMTSTALLLRSLRSLGAQVDYAIPSRMHEGYGINKRIVEEFHSEGVKLILTVDN GISAFEPIARAKELGLNVIITDHHDIPQKLPPADAILNPKLIAESSPYRGVAGVGVAYILAVSLAQKLDKTKGLIQPMLA LFTLGTIADLAPLSGVNRRWVKRGLKLLPKSQLPGVQALIQVAGVQAINSKFKIPFGNAKGEQNSKLINNDSNKDLTYGV PNPQSPVPNPQSLKPEDIGFRLGPRINAVGRIGDPLTVIELLTTDDEGLALERAMQCEQANTSRQQMCEEIEQQAIAHVE DLYATSLQQDRVLVVIQPNWHHGVIGIVASRLVERYGVPVFIGTYEDEELIRGSARSIPEFNVFEALEYCHDLLGKYGGH KAAGGFSFPATNLQKLRSRLSEFANQCLQPQHLKPLLQIDVEANFNQIHQELYQQLNSLHPCGIDNPDPVFWTPNVQVVE QQIVGKGHIKVTLSQTIEGQPYQFKAIAWRWRDYYPLPPRLDIAYKLRENNFNGNTSLELELLGVRLAQKQLEAQSHQLQ LFYQASSKPLRTAFKYNQRQYTCGVYQNNSLPELRIKNSDGKVLVMQPGNTIGLLGTSREDALEIDLTLPQYDSIVQAAI QALSMLSAEC
Specific function: Putative single-stranded-DNA-specific exonuclease. RecA thread formation during DNA double-strand break repair requires RecJ or AadAB [H]
COG id: COG0608
COG function: function code L; Single-stranded DNA-specific exonuclease
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 OB DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1789259, Length=619, Percent_Identity=30.5331179321486, Blast_Score=271, Evalue=1e-73,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003156 - InterPro: IPR001667 - InterPro: IPR004610 - InterPro: IPR018779 [H]
Pfam domain/function: PF01368 DHH; PF02272 DHHA1; PF10141 ssDNA-exonuc_C [H]
EC number: 3.1.-.- [C]
Molecular weight: Translated: 81060; Mature: 81060
Theoretical pI: Translated: 6.46; Mature: 6.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDRPPTELSKPRRRLPNQRWQIHLQKTDLAQKLADAANLSPIVCQLLINRGIETPEQAQ CCCCCCCHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHH AFLEPESLNLPSPLTEFPDLAMSVELLQEAIASQSKIAICGDYDADGMTSTALLLRSLRS HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHH LGAQVDYAIPSRMHEGYGINKRIVEEFHSEGVKLILTVDNGISAFEPIARAKELGLNVII HCCCCCCCCHHHHHCCCCCCHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEE TDHHDIPQKLPPADAILNPKLIAESSPYRGVAGVGVAYILAVSLAQKLDKTKGLIQPMLA ECCCCCCCCCCCCHHHCCCHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFTLGTIADLAPLSGVNRRWVKRGLKLLPKSQLPGVQALIQVAGVQAINSKFKIPFGNAK HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEECCCCCCC GEQNSKLINNDSNKDLTYGVPNPQSPVPNPQSLKPEDIGFRLGPRINAVGRIGDPLTVIE CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEE LLTTDDEGLALERAMQCEQANTSRQQMCEEIEQQAIAHVEDLYATSLQQDRVLVVIQPNW EEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC HHGVIGIVASRLVERYGVPVFIGTYEDEELIRGSARSIPEFNVFEALEYCHDLLGKYGGH CCHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCHHCCCCCCHHHHHHHHHHHHHHHCCCC KAAGGFSFPATNLQKLRSRLSEFANQCLQPQHLKPLLQIDVEANFNQIHQELYQQLNSLH CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCEEEEEECCCHHHHHHHHHHHHHCCC PCGIDNPDPVFWTPNVQVVEQQIVGKGHIKVTLSQTIEGQPYQFKAIAWRWRDYYPLPPR CCCCCCCCCEEECCCHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCC LDIAYKLRENNFNGNTSLELELLGVRLAQKQLEAQSHQLQLFYQASSKPLRTAFKYNQRQ CCEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCE YTCGVYQNNSLPELRIKNSDGKVLVMQPGNTIGLLGTSREDALEIDLTLPQYDSIVQAAI EEEEEEECCCCCCEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCHHHHHHHHH QALSMLSAEC HHHHHHHCCC >Mature Secondary Structure MLDRPPTELSKPRRRLPNQRWQIHLQKTDLAQKLADAANLSPIVCQLLINRGIETPEQAQ CCCCCCCHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHH AFLEPESLNLPSPLTEFPDLAMSVELLQEAIASQSKIAICGDYDADGMTSTALLLRSLRS HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHH LGAQVDYAIPSRMHEGYGINKRIVEEFHSEGVKLILTVDNGISAFEPIARAKELGLNVII HCCCCCCCCHHHHHCCCCCCHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEE TDHHDIPQKLPPADAILNPKLIAESSPYRGVAGVGVAYILAVSLAQKLDKTKGLIQPMLA ECCCCCCCCCCCCHHHCCCHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFTLGTIADLAPLSGVNRRWVKRGLKLLPKSQLPGVQALIQVAGVQAINSKFKIPFGNAK HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCEEECCCCCCC GEQNSKLINNDSNKDLTYGVPNPQSPVPNPQSLKPEDIGFRLGPRINAVGRIGDPLTVIE CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCEEEEE LLTTDDEGLALERAMQCEQANTSRQQMCEEIEQQAIAHVEDLYATSLQQDRVLVVIQPNW EEECCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCC HHGVIGIVASRLVERYGVPVFIGTYEDEELIRGSARSIPEFNVFEALEYCHDLLGKYGGH CCHHHHHHHHHHHHHCCCCEEEECCCCHHHHCCHHCCCCCCHHHHHHHHHHHHHHHCCCC KAAGGFSFPATNLQKLRSRLSEFANQCLQPQHLKPLLQIDVEANFNQIHQELYQQLNSLH CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCEEEEEECCCHHHHHHHHHHHHHCCC PCGIDNPDPVFWTPNVQVVEQQIVGKGHIKVTLSQTIEGQPYQFKAIAWRWRDYYPLPPR CCCCCCCCCEEECCCHHHHHHHHCCCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCC LDIAYKLRENNFNGNTSLELELLGVRLAQKQLEAQSHQLQLFYQASSKPLRTAFKYNQRQ CCEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHCCCCE YTCGVYQNNSLPELRIKNSDGKVLVMQPGNTIGLLGTSREDALEIDLTLPQYDSIVQAAI EEEEEEECCCCCCEEEECCCCEEEEECCCCEEEEEECCCCCCEEEEEECCCHHHHHHHHH QALSMLSAEC HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on ester bonds [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]