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The map label for this gene is 75908418

Identifier: 75908418

GI number: 75908418

Start: 2730267

End: 2731745

Strand: Direct

Name: 75908418

Synonym: Ava_2199

Alternate gene names: NA

Gene position: 2730267-2731745 (Clockwise)

Preceding gene: 75908417

Following gene: 75908419

Centisome position: 42.89

GC content: 42.39

Gene sequence:

>1479_bases
ATGTACCTGAAGCAAGAACCAGTGCAGCAATTTCCTGCTTTCCGGCTCAAATTACCATCTGTCAGGGAAAGCCAAGGTAG
TTATCAGACTCAGCCATTACCAGGGTGTCCTAGAATGCCGTTATCTGTGCAGTTGCGCCAGTATCAACGTCAAGCTATGA
CTAACTGGTTTGCGAACAATGGCCGAGGAACGCTGAAGATGGCGACTGGTAGCGGGAAAACCATAACTGCACTGGCGATT
ACTTGCGAGTTATACCAGCAGATTAGTTTACAGGTGTTGTTGGTGGTGTGTCCCTATCGTCATTTGGTGACACAATGGGG
GCGAGAATGTGAAAAGTTTAATTTACGACCTATACTAGCCTTTGAGAATTTACGCAGTTGGCAAAGTCAACTTTCTACCC
AACTTTACAATCTGCGTTCTGGTTCTCAAGGTTTTGTGACTGTGATTACTACCAATTCCACCTTAATTGGGGATGGGTTT
CAGTCACAACTCAAGTATTTTCCAGCGAAGACTTTAATTATTGGTGATGAAGCCCATAATTTAGGCGCACCTAAGTTAGA
AGAAAGTTTACCTCGGCGGGTGGGTTTACGGTTGGCTTTATCGGCGACACCAGAAAGATATTTTGATGATGGTGGTACCC
AATCTTTATTTGATTACTTCGGCCCAGTGTTACAGCCGGAGTTTACTTTACGGGATGCGATCGCTCAAGGTGCTTTGGTA
CATTACCTATATTATCCCATCTTAGTAGAGTTAACTGAGGCGGAAAGTATTGCTTATTTGAAACTAACTAAACGTATCGG
GCGATCGCTATTATATAGAGAACGCAATAATGGCGAATCATCTAATTTTGAAGATAACGAAGATTTAAAGCCTTTATTAA
TGCAACGCGCCAGATTAATTGGTGCAGCAGCAAATAAATTAAATGCTTTACGTCAATTAATGGCTACTCGCCGAGAAACC
ACTCATACGCTTTTTTATTGTAGTGATGGTTCCCTAGAAACAGGACAACGTTCATCTCTGCATCAACTCAAAGCTGTGGC
AAAAATTCTGGGCGGAGAATTAGGCTATAAGGTAAGTACATACACAGCCCAAACATCTTTACAAGAAAGAGAAATTTTAC
GTCGTCAATTTGAAAGCGGTGCATTACAAGGTTTAGTGGCAATTCGTTGTTTAGATGAAGGGGTGGATATTCCAGCAATT
CAAACGGCGGTGATTTTATCCAGTTCTGGTAATCCTCGTCAGTTTATTCAGCGACGGGGTAGGGTTTTACGTCCTCATCC
GAGTAAGGAAAGGGCTACTATCTACGACATGATTGTTTTACCGCCAGATTTGGATAGGGAAACTATAGAAGTTGAACGCA
ATCTGTTAAGAAAAGAGTTGCGGCGCTTTGTGGAGTTTGCCGATTTAGCTGATAACGCTGGTGAAGCTCGCATCAAGTTA
CTGGATTTACAAAAGCGATATGGATTGTTAGATGTTTAG

Upstream 100 bases:

>100_bases
CTGGGGGGAGATGGGGAAGAATTTCACCTACCTTGTTTCCCTCATCCTTCTCATCTTGTCAATGTCCAATCCTAGAAATT
TTGAATTTTGAATTGGTATT

Downstream 100 bases:

>100_bases
TTATTACTCATTCTTCTATGTTTAATTTTGTAAAATTTTGTTCACTAGCTGAAAATATTTGTAGTGAATATGCGAAGATA
ATCTTGATCATAATAGGATG

Product: Type III restriction enzyme, res subunit

Products: NA

Alternate protein names: Type III Restriction Res Subunit; DNA Repair Helicase; DNA Repair Helicase RAD; DNA Repair Helicase Rad; Helicase Domain-Containing Protein; DNA Repair Protein; DNA Repair Protein Rad; Superfamily II DNA/RNA Helicase; Type III Restriction Res Subunit Family; DNA Repair Protein RAD; DNA-Repair Protein; Helicase-Like; DNA-Repair Helicase; Helicase-Like Protein; Restriction Endonuclease; Helicase DNA Repair; XPB/RAD25-Related Helicase; Helicase Protein; Helicase ATP-Dependent; Type III Restriction- System Subunit Res; DNA Repair Related Protein; Restriction; DEAD/DEAH Box Helicase Domain-Containing Protein; DNA Helicase; Helicase Domain Protein

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MYLKQEPVQQFPAFRLKLPSVRESQGSYQTQPLPGCPRMPLSVQLRQYQRQAMTNWFANNGRGTLKMATGSGKTITALAI
TCELYQQISLQVLLVVCPYRHLVTQWGRECEKFNLRPILAFENLRSWQSQLSTQLYNLRSGSQGFVTVITTNSTLIGDGF
QSQLKYFPAKTLIIGDEAHNLGAPKLEESLPRRVGLRLALSATPERYFDDGGTQSLFDYFGPVLQPEFTLRDAIAQGALV
HYLYYPILVELTEAESIAYLKLTKRIGRSLLYRERNNGESSNFEDNEDLKPLLMQRARLIGAAANKLNALRQLMATRRET
THTLFYCSDGSLETGQRSSLHQLKAVAKILGGELGYKVSTYTAQTSLQEREILRRQFESGALQGLVAIRCLDEGVDIPAI
QTAVILSSSGNPRQFIQRRGRVLRPHPSKERATIYDMIVLPPDLDRETIEVERNLLRKELRRFVEFADLADNAGEARIKL
LDLQKRYGLLDV

Sequences:

>Translated_492_residues
MYLKQEPVQQFPAFRLKLPSVRESQGSYQTQPLPGCPRMPLSVQLRQYQRQAMTNWFANNGRGTLKMATGSGKTITALAI
TCELYQQISLQVLLVVCPYRHLVTQWGRECEKFNLRPILAFENLRSWQSQLSTQLYNLRSGSQGFVTVITTNSTLIGDGF
QSQLKYFPAKTLIIGDEAHNLGAPKLEESLPRRVGLRLALSATPERYFDDGGTQSLFDYFGPVLQPEFTLRDAIAQGALV
HYLYYPILVELTEAESIAYLKLTKRIGRSLLYRERNNGESSNFEDNEDLKPLLMQRARLIGAAANKLNALRQLMATRRET
THTLFYCSDGSLETGQRSSLHQLKAVAKILGGELGYKVSTYTAQTSLQEREILRRQFESGALQGLVAIRCLDEGVDIPAI
QTAVILSSSGNPRQFIQRRGRVLRPHPSKERATIYDMIVLPPDLDRETIEVERNLLRKELRRFVEFADLADNAGEARIKL
LDLQKRYGLLDV
>Mature_492_residues
MYLKQEPVQQFPAFRLKLPSVRESQGSYQTQPLPGCPRMPLSVQLRQYQRQAMTNWFANNGRGTLKMATGSGKTITALAI
TCELYQQISLQVLLVVCPYRHLVTQWGRECEKFNLRPILAFENLRSWQSQLSTQLYNLRSGSQGFVTVITTNSTLIGDGF
QSQLKYFPAKTLIIGDEAHNLGAPKLEESLPRRVGLRLALSATPERYFDDGGTQSLFDYFGPVLQPEFTLRDAIAQGALV
HYLYYPILVELTEAESIAYLKLTKRIGRSLLYRERNNGESSNFEDNEDLKPLLMQRARLIGAAANKLNALRQLMATRRET
THTLFYCSDGSLETGQRSSLHQLKAVAKILGGELGYKVSTYTAQTSLQEREILRRQFESGALQGLVAIRCLDEGVDIPAI
QTAVILSSSGNPRQFIQRRGRVLRPHPSKERATIYDMIVLPPDLDRETIEVERNLLRKELRRFVEFADLADNAGEARIKL
LDLQKRYGLLDV

Specific function: Unknown

COG id: COG1061

COG function: function code KL; DNA or RNA helicases of superfamily II

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55720; Mature: 55720

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLKQEPVQQFPAFRLKLPSVRESQGSYQTQPLPGCPRMPLSVQLRQYQRQAMTNWFANN
CCCCCCHHHHCCHHEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
GRGTLKMATGSGKTITALAITCELYQQISLQVLLVVCPYRHLVTQWGRECEKFNLRPILA
CCEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEH
FENLRSWQSQLSTQLYNLRSGSQGFVTVITTNSTLIGDGFQSQLKYFPAKTLIIGDEAHN
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEECCCHHHHHHHCCCEEEEECCCCCC
LGAPKLEESLPRRVGLRLALSATPERYFDDGGTQSLFDYFGPVLQPEFTLRDAIAQGALV
CCCCHHHHHHHHHHCEEEEEECCCHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH
HYLYYPILVELTEAESIAYLKLTKRIGRSLLYRERNNGESSNFEDNEDLKPLLMQRARLI
HHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
GAAANKLNALRQLMATRRETTHTLFYCSDGSLETGQRSSLHQLKAVAKILGGELGYKVST
HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE
YTAQTSLQEREILRRQFESGALQGLVAIRCLDEGVDIPAIQTAVILSSSGNPRQFIQRRG
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEEEECCCCHHHHHHHCC
RVLRPHPSKERATIYDMIVLPPDLDRETIEVERNLLRKELRRFVEFADLADNAGEARIKL
CEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
LDLQKRYGLLDV
EEEHHHCCCCCC
>Mature Secondary Structure
MYLKQEPVQQFPAFRLKLPSVRESQGSYQTQPLPGCPRMPLSVQLRQYQRQAMTNWFANN
CCCCCCHHHHCCHHEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
GRGTLKMATGSGKTITALAITCELYQQISLQVLLVVCPYRHLVTQWGRECEKFNLRPILA
CCEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEH
FENLRSWQSQLSTQLYNLRSGSQGFVTVITTNSTLIGDGFQSQLKYFPAKTLIIGDEAHN
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCEEECCCHHHHHHHCCCEEEEECCCCCC
LGAPKLEESLPRRVGLRLALSATPERYFDDGGTQSLFDYFGPVLQPEFTLRDAIAQGALV
CCCCHHHHHHHHHHCEEEEEECCCHHHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH
HYLYYPILVELTEAESIAYLKLTKRIGRSLLYRERNNGESSNFEDNEDLKPLLMQRARLI
HHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
GAAANKLNALRQLMATRRETTHTLFYCSDGSLETGQRSSLHQLKAVAKILGGELGYKVST
HHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE
YTAQTSLQEREILRRQFESGALQGLVAIRCLDEGVDIPAIQTAVILSSSGNPRQFIQRRG
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEEEECCCCHHHHHHHCC
RVLRPHPSKERATIYDMIVLPPDLDRETIEVERNLLRKELRRFVEFADLADNAGEARIKL
CEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
LDLQKRYGLLDV
EEEHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA