Click here to switch to the map view.

The map label for this gene is 75908149

Identifier: 75908149

GI number: 75908149

Start: 2391463

End: 2393304

Strand: Direct

Name: 75908149

Synonym: Ava_1928

Alternate gene names: NA

Gene position: 2391463-2393304 (Clockwise)

Preceding gene: 75908145

Following gene: 75908150

Centisome position: 37.57

GC content: 43.7

Gene sequence:

>1842_bases
ATGAGCGGAAAGCCTAAGCTTGATCTAAGATTTATCTACGCACAGGTTTTTGCAGGCGATCGCTCGATGTCTCTACCCCA
AATCAGTGAATTTACAGTCCGTCGCTACGCTAATGCCAAATCTTTCCAACGTGGGGAGGCTTATTTTGAAGCGGGTGCTG
TCATCACAATTACTCAGCGTGGTCAGCAATTGCAGGCAGAAGTTGAAGGAAATGAACGATTACCTTATCGTGTATCTCTC
AATTTTGATGACAAGACTATCGCTTCGGCCAAGTGTACTTGTGCTTATAACCTAGATGGCTGGTGTAAACACATTGTGGC
GACGATGCTTGTATCTACAAGACAACCAGAAATTATTGAGCAGCGTCCTACTATAGAACAATTACTAGATCGTTTAGATC
ATGTCCAGACTCAAAGGCTCGTACAGGAATTAGTTGCCGAACAACCCCAACTCATAGATGTAATTGATCAGCACGTTAGT
TGGATGACTAATCCTGTAGCTAAACCTATATCTACTCAACCCGGACGGCAAGTAACTGTGAATTTGGCTTCCTTTCGCGG
ACAGGTTAAGCAAATTTTGCGGGAAGCAGTCCGCTACTTTGAGGAGGGGTACGAGGAAGACCCAATTACCGAAGATTTGT
TTAGTTTGGTGCAGACGGCTTTAGAATTTTCTCAGCAAGGAGAAAGTAATAATGCGATCGCCATTCTCGAAGCCATCACC
TCTACCTGTGCCGAAAATTGGGATGAGGTATCAGAATATGGTGCTGACAATGATGAAATTGCCTGGGAGTTAAATCTGGC
TTGGTGTGAAGTTATTCTCTCGTCTGAACTGACATCAGCAGAAAAAGTTGATGTGCAAGTGAGTTTGGAAGCTTGGCAAG
ATGAATGGAATGCCGACTTCACCATGAGTTTAGATGCGTTGCGTCAAGGTTGGGATAATCCGCATTTGCTGCGAGTTCTC
CAGGGCGATATCGCTGAAATGGGTGTATGGGAGAGAGAAGTTCCCAATTATGCTGATGATTTGGCACAAATTCGCCTCAA
AATTCTCGAACGCCAGGAACGCTACCAAGAATATCTATATTTAGCCCAAGCAGAGGGACAAACCCAAGAATATTTAACTA
TGTTGGGGCGTTTAGGTAGGGTAGAGGAAGCATTGGCGGCGGCGGAAATGCAGATGAGTTCCACAGAAGAGGCTTTTGCT
TTAGCTAAAACCTTAGCGGAACAAGGTTCATTACCCGAAGCATTGGACATAGCCCAAGTTGGTTTTAAGTTACCGGGGAA
TTGTCGGTATGAATTAGGTATTTGGACAAGCGATTTAGCCGAAGCTGTGGGTAACCCAGAGATTTCTTTACTTGCACTCA
AGGAAGCTTTTCAAGTTAAACCCTGCTTTGTTGATTATCAAAAAATGGCAGAATTAGCGGGTGAAAATTGGGAAAATGTC
AAAACAGATTTATTAAGGATTATCCAGAGTTGTAAGACTTGGGGAATAGAATCAGCCAAGGTGGATGTATTTTTATCTGA
GGGACTGATTGAGGATGCGATCGCTACTGTTAGTGAACTCAGTTCCTATCATTCAGCTTTAATCCACCGAGTCATGGAAG
CTGCCATATCACATAAGCCCGATTGGGTAATAACTAATGCCCGTCGCCGTGCTGAAAAAATTATGGATGAGGGTAAGGCA
GAATATTACAGTGAAGCAGTGCAGTGGTTGAAAAAGGTACGTGCTGCTTACATACAATCTGGCAGACAAGCTGATTGGTC
AAAATATCGAGAAAAGTTAATAGAAATCCACGCCCGTAAACGGAAATTGATGGGAATGTTCAAAGAACGGGGGATGGAGT
GA

Upstream 100 bases:

>100_bases
GGGATTGGGGACTGGGGATTGGGTATTGTAGAGACGCGATTCATCGCGTCTATGAAAAAATTCATCGCGTCACTAATGAC
CAATCTCCTAATTGCAATCA

Downstream 100 bases:

>100_bases
CAAAGCAGGGGAGTATAGAATCAGGGGAACATTGGGGAATCATCGCCGTCACTTATGGTACCAACCGTGACTCATTAGAC
TATATGATTAAAAAGATACA

Product: SWIM Zn-finger

Products: NA

Alternate protein names: SWIM Zinc Finger Domain-Containing Protein; Zinc Finger SWIM Domain Protein

Number of amino acids: Translated: 613; Mature: 612

Protein sequence:

>613_residues
MSGKPKLDLRFIYAQVFAGDRSMSLPQISEFTVRRYANAKSFQRGEAYFEAGAVITITQRGQQLQAEVEGNERLPYRVSL
NFDDKTIASAKCTCAYNLDGWCKHIVATMLVSTRQPEIIEQRPTIEQLLDRLDHVQTQRLVQELVAEQPQLIDVIDQHVS
WMTNPVAKPISTQPGRQVTVNLASFRGQVKQILREAVRYFEEGYEEDPITEDLFSLVQTALEFSQQGESNNAIAILEAIT
STCAENWDEVSEYGADNDEIAWELNLAWCEVILSSELTSAEKVDVQVSLEAWQDEWNADFTMSLDALRQGWDNPHLLRVL
QGDIAEMGVWEREVPNYADDLAQIRLKILERQERYQEYLYLAQAEGQTQEYLTMLGRLGRVEEALAAAEMQMSSTEEAFA
LAKTLAEQGSLPEALDIAQVGFKLPGNCRYELGIWTSDLAEAVGNPEISLLALKEAFQVKPCFVDYQKMAELAGENWENV
KTDLLRIIQSCKTWGIESAKVDVFLSEGLIEDAIATVSELSSYHSALIHRVMEAAISHKPDWVITNARRRAEKIMDEGKA
EYYSEAVQWLKKVRAAYIQSGRQADWSKYREKLIEIHARKRKLMGMFKERGME

Sequences:

>Translated_613_residues
MSGKPKLDLRFIYAQVFAGDRSMSLPQISEFTVRRYANAKSFQRGEAYFEAGAVITITQRGQQLQAEVEGNERLPYRVSL
NFDDKTIASAKCTCAYNLDGWCKHIVATMLVSTRQPEIIEQRPTIEQLLDRLDHVQTQRLVQELVAEQPQLIDVIDQHVS
WMTNPVAKPISTQPGRQVTVNLASFRGQVKQILREAVRYFEEGYEEDPITEDLFSLVQTALEFSQQGESNNAIAILEAIT
STCAENWDEVSEYGADNDEIAWELNLAWCEVILSSELTSAEKVDVQVSLEAWQDEWNADFTMSLDALRQGWDNPHLLRVL
QGDIAEMGVWEREVPNYADDLAQIRLKILERQERYQEYLYLAQAEGQTQEYLTMLGRLGRVEEALAAAEMQMSSTEEAFA
LAKTLAEQGSLPEALDIAQVGFKLPGNCRYELGIWTSDLAEAVGNPEISLLALKEAFQVKPCFVDYQKMAELAGENWENV
KTDLLRIIQSCKTWGIESAKVDVFLSEGLIEDAIATVSELSSYHSALIHRVMEAAISHKPDWVITNARRRAEKIMDEGKA
EYYSEAVQWLKKVRAAYIQSGRQADWSKYREKLIEIHARKRKLMGMFKERGME
>Mature_612_residues
SGKPKLDLRFIYAQVFAGDRSMSLPQISEFTVRRYANAKSFQRGEAYFEAGAVITITQRGQQLQAEVEGNERLPYRVSLN
FDDKTIASAKCTCAYNLDGWCKHIVATMLVSTRQPEIIEQRPTIEQLLDRLDHVQTQRLVQELVAEQPQLIDVIDQHVSW
MTNPVAKPISTQPGRQVTVNLASFRGQVKQILREAVRYFEEGYEEDPITEDLFSLVQTALEFSQQGESNNAIAILEAITS
TCAENWDEVSEYGADNDEIAWELNLAWCEVILSSELTSAEKVDVQVSLEAWQDEWNADFTMSLDALRQGWDNPHLLRVLQ
GDIAEMGVWEREVPNYADDLAQIRLKILERQERYQEYLYLAQAEGQTQEYLTMLGRLGRVEEALAAAEMQMSSTEEAFAL
AKTLAEQGSLPEALDIAQVGFKLPGNCRYELGIWTSDLAEAVGNPEISLLALKEAFQVKPCFVDYQKMAELAGENWENVK
TDLLRIIQSCKTWGIESAKVDVFLSEGLIEDAIATVSELSSYHSALIHRVMEAAISHKPDWVITNARRRAEKIMDEGKAE
YYSEAVQWLKKVRAAYIQSGRQADWSKYREKLIEIHARKRKLMGMFKERGME

Specific function: Unknown

COG id: COG4715

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 69711; Mature: 69579

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: PS50966 ZF_SWIM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKPKLDLRFIYAQVFAGDRSMSLPQISEFTVRRYANAKSFQRGEAYFEAGAVITITQR
CCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHHCHHHHHCCCEEEEECC
GQQLQAEVEGNERLPYRVSLNFDDKTIASAKCTCAYNLDGWCKHIVATMLVSTRQPEIIE
CCCEEHCCCCCCCCCEEEEECCCCCHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCHHHH
QRPTIEQLLDRLDHVQTQRLVQELVAEQPQLIDVIDQHVSWMTNPVAKPISTQPGRQVTV
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
NLASFRGQVKQILREAVRYFEEGYEEDPITEDLFSLVQTALEFSQQGESNNAIAILEAIT
EHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
STCAENWDEVSEYGADNDEIAWELNLAWCEVILSSELTSAEKVDVQVSLEAWQDEWNADF
HHHHHCHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHCCCCHHEEEEEEHHHHHHCCCCCE
TMSLDALRQGWDNPHLLRVLQGDIAEMGVWEREVPNYADDLAQIRLKILERQERYQEYLY
EEEHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LAQAEGQTQEYLTMLGRLGRVEEALAAAEMQMSSTEEAFALAKTLAEQGSLPEALDIAQV
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHH
GFKLPGNCRYELGIWTSDLAEAVGNPEISLLALKEAFQVKPCFVDYQKMAELAGENWENV
CCCCCCCCEEEECCCHHHHHHHHCCCCEEEEEEHHHHHCCCHHHHHHHHHHHCCCCHHHH
KTDLLRIIQSCKTWGIESAKVDVFLSEGLIEDAIATVSELSSYHSALIHRVMEAAISHKP
HHHHHHHHHHHHHCCCCCCEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DWVITNARRRAEKIMDEGKAEYYSEAVQWLKKVRAAYIQSGRQADWSKYREKLIEIHARK
CEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RKLMGMFKERGME
HHHHHHHHHCCCC
>Mature Secondary Structure 
SGKPKLDLRFIYAQVFAGDRSMSLPQISEFTVRRYANAKSFQRGEAYFEAGAVITITQR
CCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCHHHHHHCHHHHHCCCEEEEECC
GQQLQAEVEGNERLPYRVSLNFDDKTIASAKCTCAYNLDGWCKHIVATMLVSTRQPEIIE
CCCEEHCCCCCCCCCEEEEECCCCCHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCHHHH
QRPTIEQLLDRLDHVQTQRLVQELVAEQPQLIDVIDQHVSWMTNPVAKPISTQPGRQVTV
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEE
NLASFRGQVKQILREAVRYFEEGYEEDPITEDLFSLVQTALEFSQQGESNNAIAILEAIT
EHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
STCAENWDEVSEYGADNDEIAWELNLAWCEVILSSELTSAEKVDVQVSLEAWQDEWNADF
HHHHHCHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHCCCCHHEEEEEEHHHHHHCCCCCE
TMSLDALRQGWDNPHLLRVLQGDIAEMGVWEREVPNYADDLAQIRLKILERQERYQEYLY
EEEHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LAQAEGQTQEYLTMLGRLGRVEEALAAAEMQMSSTEEAFALAKTLAEQGSLPEALDIAQV
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHH
GFKLPGNCRYELGIWTSDLAEAVGNPEISLLALKEAFQVKPCFVDYQKMAELAGENWENV
CCCCCCCCEEEECCCHHHHHHHHCCCCEEEEEEHHHHHCCCHHHHHHHHHHHCCCCHHHH
KTDLLRIIQSCKTWGIESAKVDVFLSEGLIEDAIATVSELSSYHSALIHRVMEAAISHKP
HHHHHHHHHHHHHCCCCCCEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DWVITNARRRAEKIMDEGKAEYYSEAVQWLKKVRAAYIQSGRQADWSKYREKLIEIHARK
CEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RKLMGMFKERGME
HHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA