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The map label for this gene is ndhJ

Identifier: 75908081

GI number: 75908081

Start: 2313465

End: 2313992

Strand: Direct

Name: ndhJ

Synonym: Ava_1860

Alternate gene names: 75908081

Gene position: 2313465-2313992 (Clockwise)

Preceding gene: 75908080

Following gene: 75908082

Centisome position: 36.34

GC content: 45.45

Gene sequence:

>528_bases
GTGGCTGATGAAGAATTAAAACCAGTACCCGCAGCAGCAGAGGCTATAGTTCCATCTGGGCCGACTTCTCAGTGGCTAAC
GGAAAATGGCTTTGCTCATGAATCCTTGGCGGCTGACAAAAATGGTGTAGAGATAATTAAAGTGGAACCAGATTTTCTGC
TTCCCATCGCTACAGCCCTGTATGCTTACGGGTTTAATTATCTTCAGTTTCAAGGCGGTATTGATCTCGGCCCAGGACAG
GATTTAGTCAGTGTGTATCACTTGGTGAAAGTGAGTGACAACGCTGATAAGCCTGAAGAAGTCAGAGTGAAGGTGTTTTT
ACCACGGGAAAATCCTGTAGTACCTTCGGTTTACTGGATTTGGAAAACCGCAGACTGGCAAGAACGCGAATCTTACGATA
TGTTCGGTATTATCTACGAAGGACACCCCAATTTGAAACGCATTTTGATGCCAGAAGATTGGGTAGGTTGGCCTTTGCGG
AAGGATTACATCTCGCCTGATTTCTACGAGTTACAGGACGCTTATTAG

Upstream 100 bases:

>100_bases
GAGACTCGCTTCAACCCACCAAAAGAATTGACAGAAGCGATCGGTCTTCCTGTTCCCCCAGCGCTGCTGACATCACAAAC
ACAGAAGGAGGAACAAAAAC

Downstream 100 bases:

>100_bases
GCTGAGTACTAAGTGTCAGCTTGTGAGAATTTTCATATCTCATCTTTAACCCCTTTCCGGCGGCGGAGAGGGGTAATGTT
TTTTAAACGCAAAGTGGCGC

Product: NADH dehydrogenase subunit J

Products: NAD+; ubiquinol

Alternate protein names: NAD(P)H dehydrogenase subunit J; NADH-plastoquinone oxidoreductase subunit J; NDH-1 subunit J; NDH-J

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MADEELKPVPAAAEAIVPSGPTSQWLTENGFAHESLAADKNGVEIIKVEPDFLLPIATALYAYGFNYLQFQGGIDLGPGQ
DLVSVYHLVKVSDNADKPEEVRVKVFLPRENPVVPSVYWIWKTADWQERESYDMFGIIYEGHPNLKRILMPEDWVGWPLR
KDYISPDFYELQDAY

Sequences:

>Translated_175_residues
MADEELKPVPAAAEAIVPSGPTSQWLTENGFAHESLAADKNGVEIIKVEPDFLLPIATALYAYGFNYLQFQGGIDLGPGQ
DLVSVYHLVKVSDNADKPEEVRVKVFLPRENPVVPSVYWIWKTADWQERESYDMFGIIYEGHPNLKRILMPEDWVGWPLR
KDYISPDFYELQDAY
>Mature_174_residues
ADEELKPVPAAAEAIVPSGPTSQWLTENGFAHESLAADKNGVEIIKVEPDFLLPIATALYAYGFNYLQFQGGIDLGPGQD
LVSVYHLVKVSDNADKPEEVRVKVFLPRENPVVPSVYWIWKTADWQERESYDMFGIIYEGHPNLKRILMPEDWVGWPLRK
DYISPDFYELQDAY

Specific function: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone

COG id: COG0852

COG function: function code C; NADH:ubiquinone oxidoreductase 27 kD subunit

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I 30 kDa subunit family

Homologues:

Organism=Homo sapiens, GI4758788, Length=136, Percent_Identity=31.6176470588235, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI145693162, Length=86, Percent_Identity=44.1860465116279, Blast_Score=85, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI32563621, Length=120, Percent_Identity=35, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71990788, Length=120, Percent_Identity=35, Blast_Score=67, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NDHJ_ANAVT (Q9XBL6)

Other databases:

- EMBL:   AJ012181
- EMBL:   CP000117
- RefSeq:   YP_322377.1
- ProteinModelPortal:   Q9XBL6
- SMR:   Q9XBL6
- STRING:   Q9XBL6
- GeneID:   3681812
- GenomeReviews:   CP000117_GR
- KEGG:   ava:Ava_1860
- NMPDR:   fig|240292.3.peg.2940
- eggNOG:   COG0852
- HOGENOM:   HBG727675
- OMA:   YELQDAY
- ProtClustDB:   PRK12494
- BioCyc:   AVAR240292:AVA_1860-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_01357
- InterPro:   IPR010218
- InterPro:   IPR001268
- InterPro:   IPR020396
- ProDom:   PD001581

Pfam domain/function: PF00329 Complex1_30kDa

EC number: 1.6.5.3

Molecular weight: Translated: 19920; Mature: 19788

Theoretical pI: Translated: 4.21; Mature: 4.21

Prosite motif: PS00542 COMPLEX1_30K

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADEELKPVPAAAEAIVPSGPTSQWLTENGFAHESLAADKNGVEIIKVEPDFLLPIATAL
CCCCCCCCCCCCHHEECCCCCCCCHHCCCCCCCHHHCCCCCCCEEEEECCCHHHHHHHHH
YAYGFNYLQFQGGIDLGPGQDLVSVYHLVKVSDNADKPEEVRVKVFLPRENPVVPSVYWI
HHHCCCEEEEECCCCCCCCHHHHHHHHHEEECCCCCCCCEEEEEEEECCCCCCCCEEEEE
WKTADWQERESYDMFGIIYEGHPNLKRILMPEDWVGWPLRKDYISPDFYELQDAY
EECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCCC
>Mature Secondary Structure 
ADEELKPVPAAAEAIVPSGPTSQWLTENGFAHESLAADKNGVEIIKVEPDFLLPIATAL
CCCCCCCCCCCHHEECCCCCCCCHHCCCCCCCHHHCCCCCCCEEEEECCCHHHHHHHHH
YAYGFNYLQFQGGIDLGPGQDLVSVYHLVKVSDNADKPEEVRVKVFLPRENPVVPSVYWI
HHHCCCEEEEECCCCCCCCHHHHHHHHHEEECCCCCCCCEEEEEEEECCCCCCCCEEEEE
WKTADWQERESYDMFGIIYEGHPNLKRILMPEDWVGWPLRKDYISPDFYELQDAY
EECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NADH; H+; ubiquinone

Specific reaction: NADH + H+ + ubiquinone = NAD+ + ubiquinol

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA