| Definition | Anabaena variabilis ATCC 29413 chromosome, complete genome. |
|---|---|
| Accession | NC_007413 |
| Length | 6,365,727 |
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The map label for this gene is yddW [H]
Identifier: 75907990
GI number: 75907990
Start: 2204397
End: 2206679
Strand: Direct
Name: yddW [H]
Synonym: Ava_1769
Alternate gene names: 75907990
Gene position: 2204397-2206679 (Clockwise)
Preceding gene: 75907984
Following gene: 75907994
Centisome position: 34.63
GC content: 44.42
Gene sequence:
>2283_bases ATGGATTGTTGCCTTGAATCAAAAAATTCCCCATTAAGCATCAATTTTGAGCCAGTAATGCCAATTGAATTCCAACCCCA AAGCATTCGAGTTAACACTTGGTTAACTAAGTTATTATCCATACCCAAAAAATTGCTTTTTGTTCTTCAAGGTTGGCGGT CAATTAAGCGACTTTTTCCAGTCTTGTTTGCACTGTCATTTACTACAGTACTATTACTACAAAACCTCACGCCAGCAACG GCGCAAATATCCCCATCACCACGACAAGAAATTCGGGGAGTTTGGCTAACAAATAATGACTTTGACATACTCAGAAATCG CGCTAAAGTGCAGGACACACTGACTCAATTGCGGCGGTTGAATTTTAATACAATTTATCCCGTTGTTTGGAACGATGGCT ATACCAAGTATCCCAGTGCTGTCACCCAACGGATGGGCATCCCTTATTTCTTTCGAGGCACAGAAGGGCAAGACGTAATT GCAGACATTATTAGTCAAGCTCGTAGTCAAGGCTTACTAGCTATACCTTGGTTCGAGTTTGGTTTTATGGCTCCCTTAAC TTCCGAACTAGCATCCCAGCATCCAGATTGGCTGACACAAAAGCAGGATGGAACCCAAACCTCAATTTCTGCGGCGGGTG AAGTAGCCTGGCTGAATCCCTTCCACCCAGAAGTACAGCAGTTTATTACTGACCTGGTAGTAGAAATCATTACCAAATAC AACGCTGATGGGATTCAATTTGATGACCACATGAGTTTACCCGTTGATTTTGGCTATGACAAATACACAATTAATCTCTA CAGACAGGAAACTGGGAATCCGCCGCCGCCTAATCCTCAAGCCCAAGCATGGATAAAATGGCGGGCAGATAAAATCACCG CTTTCATGGTGCAACTCAATCAAGCTGTGAAAGCCAGAAAACCCAATGCCATTTTTGCCGTTTCGCCCAATTACTATGAC TTTGCATACAAGTTGCAATTACAAGATTGGCTCAACTGGGTCAGGTTAGGTGTTGTAGATGAGTTAGTAGTCCAGGTTTA CCGGAATGATTTGCAAAGTTTTAATAGTAAACTCATCACTCCAGAAATTCTCGAAACACAACAGTTAATACCTACTGGTA TAGGTATTATGACTGGCTTGAGAAATCGCCAAGTTTCCATGTCACAAATTCAGTCGCAAGTCAGGGCGGCTCAAGAACGT GGCTTAGGAGCGGTCTTTTTCTACTACGAAAGCCTTTGGGACTATGCACCAGAGCCAGTGGCGCAACGACAGGCTGCTTT TCAACAACTGTTTCCCAATCCGGCTAGGCGTGATACTTCTCAAATCACAGCCCGAAAACCGAGTTTTAATACTATCTCAG TTCCCTTATATACAAAAGGTTCTGTTGGGCAACGAGAGCGGGGTTATTTTCTCGAAGTAGCAGTGGCTGGTGGTCAGCCA AGGCGTGTTCTGATGGATACAGGCTCTGGGGGGCTGAGAGTGCCTAGAGAGTTTTTAGGCAATGCCCCTATCAATAGAAC TGGTCAGATAGTCAGAGAGGTGCTAAACGATGGCACTATCCTCGAAGGAGAGTTAGTTTACACAAGTATGCGTATGGGGT TAATTGCCACTGAAGAACCTGTGCCGGTGCAAATCGTCACCAGTCGCCAATGTGTAGCCCAAAAACCTAATTGCTCTGCC AGGGGTAACACACCGTTCTCTGGTATTATCGGTGTCAACTATGCAGAACGCTCACTGCCTTACAATCCTTTGAGAAAACT ACCAGGGAATTTAAGTAACGGATTTATTATTGCAGGCGATCGCACTAGTGGTAACAGTAGCCTCATCCTGGGTTTAACAG CACAGAATCGGGGAGGATTTAATCTAGCTTCCCTGACTCAACAACCCGCAATGAATAGTATTCCAGGAAATAGATGGGAC TCTAGGCTCAATGGAGTTTGTTTAACTATTTCTGGCAGTGCCATGAAAAATACCTGTAATGCCAAAATGCTAGCGGATAC TGGCGTAATCAGTAGTTTTATTGACTTTAAGTCTGCTTCCCTCATGGGTAAACTCAAACCCGGCAGGTTAAGCCCAAACA ACACGCTCAAGTTATCCATTCCCCGCATACTTGACTACAGCCTCGCCCCAGGCAATCGCAACGGGTTTAATGTATGGAAT CTCAATGTTTCACCACAGCTAGATCAAGCTATGGTTGTGAATAGTGGCATAGCACTGTTCGACCGATACAATGTACTTTT TGACCCAGTGAATGGACAAGAAGGTTTCCGTCTTCGCAGTTAA
Upstream 100 bases:
>100_bases TCGGACTTGGCACTACTTAGTCATTATTTGCGTCAAGTTCATCGTTAGGACTTGCCTAAATATTCAAGTCCTGACTAAAA CCTATGTAGTGCAGCAATAT
Downstream 100 bases:
>100_bases GTTCAGATTTGGTAATTGGTAATTGGTAATAGGTAATTGGGTTCTACCATGACCAATTACCTATTACCAAAGACCAGAAA TAATATAAGTTTTCAAACAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 760; Mature: 760
Protein sequence:
>760_residues MDCCLESKNSPLSINFEPVMPIEFQPQSIRVNTWLTKLLSIPKKLLFVLQGWRSIKRLFPVLFALSFTTVLLLQNLTPAT AQISPSPRQEIRGVWLTNNDFDILRNRAKVQDTLTQLRRLNFNTIYPVVWNDGYTKYPSAVTQRMGIPYFFRGTEGQDVI ADIISQARSQGLLAIPWFEFGFMAPLTSELASQHPDWLTQKQDGTQTSISAAGEVAWLNPFHPEVQQFITDLVVEIITKY NADGIQFDDHMSLPVDFGYDKYTINLYRQETGNPPPPNPQAQAWIKWRADKITAFMVQLNQAVKARKPNAIFAVSPNYYD FAYKLQLQDWLNWVRLGVVDELVVQVYRNDLQSFNSKLITPEILETQQLIPTGIGIMTGLRNRQVSMSQIQSQVRAAQER GLGAVFFYYESLWDYAPEPVAQRQAAFQQLFPNPARRDTSQITARKPSFNTISVPLYTKGSVGQRERGYFLEVAVAGGQP RRVLMDTGSGGLRVPREFLGNAPINRTGQIVREVLNDGTILEGELVYTSMRMGLIATEEPVPVQIVTSRQCVAQKPNCSA RGNTPFSGIIGVNYAERSLPYNPLRKLPGNLSNGFIIAGDRTSGNSSLILGLTAQNRGGFNLASLTQQPAMNSIPGNRWD SRLNGVCLTISGSAMKNTCNAKMLADTGVISSFIDFKSASLMGKLKPGRLSPNNTLKLSIPRILDYSLAPGNRNGFNVWN LNVSPQLDQAMVVNSGIALFDRYNVLFDPVNGQEGFRLRS
Sequences:
>Translated_760_residues MDCCLESKNSPLSINFEPVMPIEFQPQSIRVNTWLTKLLSIPKKLLFVLQGWRSIKRLFPVLFALSFTTVLLLQNLTPAT AQISPSPRQEIRGVWLTNNDFDILRNRAKVQDTLTQLRRLNFNTIYPVVWNDGYTKYPSAVTQRMGIPYFFRGTEGQDVI ADIISQARSQGLLAIPWFEFGFMAPLTSELASQHPDWLTQKQDGTQTSISAAGEVAWLNPFHPEVQQFITDLVVEIITKY NADGIQFDDHMSLPVDFGYDKYTINLYRQETGNPPPPNPQAQAWIKWRADKITAFMVQLNQAVKARKPNAIFAVSPNYYD FAYKLQLQDWLNWVRLGVVDELVVQVYRNDLQSFNSKLITPEILETQQLIPTGIGIMTGLRNRQVSMSQIQSQVRAAQER GLGAVFFYYESLWDYAPEPVAQRQAAFQQLFPNPARRDTSQITARKPSFNTISVPLYTKGSVGQRERGYFLEVAVAGGQP RRVLMDTGSGGLRVPREFLGNAPINRTGQIVREVLNDGTILEGELVYTSMRMGLIATEEPVPVQIVTSRQCVAQKPNCSA RGNTPFSGIIGVNYAERSLPYNPLRKLPGNLSNGFIIAGDRTSGNSSLILGLTAQNRGGFNLASLTQQPAMNSIPGNRWD SRLNGVCLTISGSAMKNTCNAKMLADTGVISSFIDFKSASLMGKLKPGRLSPNNTLKLSIPRILDYSLAPGNRNGFNVWN LNVSPQLDQAMVVNSGIALFDRYNVLFDPVNGQEGFRLRS >Mature_760_residues MDCCLESKNSPLSINFEPVMPIEFQPQSIRVNTWLTKLLSIPKKLLFVLQGWRSIKRLFPVLFALSFTTVLLLQNLTPAT AQISPSPRQEIRGVWLTNNDFDILRNRAKVQDTLTQLRRLNFNTIYPVVWNDGYTKYPSAVTQRMGIPYFFRGTEGQDVI ADIISQARSQGLLAIPWFEFGFMAPLTSELASQHPDWLTQKQDGTQTSISAAGEVAWLNPFHPEVQQFITDLVVEIITKY NADGIQFDDHMSLPVDFGYDKYTINLYRQETGNPPPPNPQAQAWIKWRADKITAFMVQLNQAVKARKPNAIFAVSPNYYD FAYKLQLQDWLNWVRLGVVDELVVQVYRNDLQSFNSKLITPEILETQQLIPTGIGIMTGLRNRQVSMSQIQSQVRAAQER GLGAVFFYYESLWDYAPEPVAQRQAAFQQLFPNPARRDTSQITARKPSFNTISVPLYTKGSVGQRERGYFLEVAVAGGQP RRVLMDTGSGGLRVPREFLGNAPINRTGQIVREVLNDGTILEGELVYTSMRMGLIATEEPVPVQIVTSRQCVAQKPNCSA RGNTPFSGIIGVNYAERSLPYNPLRKLPGNLSNGFIIAGDRTSGNSSLILGLTAQNRGGFNLASLTQQPAMNSIPGNRWD SRLNGVCLTISGSAMKNTCNAKMLADTGVISSFIDFKSASLMGKLKPGRLSPNNTLKLSIPRILDYSLAPGNRNGFNVWN LNVSPQLDQAMVVNSGIALFDRYNVLFDPVNGQEGFRLRS
Specific function: Unknown
COG id: COG1649
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0748 family [H]
Homologues:
Organism=Escherichia coli, GI1787767, Length=319, Percent_Identity=26.9592476489028, Blast_Score=82, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003790 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF02638 DUF187 [H]
EC number: NA
Molecular weight: Translated: 84953; Mature: 84953
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDCCLESKNSPLSINFEPVMPIEFQPQSIRVNTWLTKLLSIPKKLLFVLQGWRSIKRLFP CCCCCCCCCCCEEEECCCCCCEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLFALSFTTVLLLQNLTPATAQISPSPRQEIRGVWLTNNDFDILRNRAKVQDTLTQLRRL HHHHHHHHHHHHHHCCCCCCEECCCCCHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHC NFNTIYPVVWNDGYTKYPSAVTQRMGIPYFFRGTEGQDVIADIISQARSQGLLAIPWFEF CCCEEEEEEECCCCCCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCEEEECHHHH GFMAPLTSELASQHPDWLTQKQDGTQTSISAAGEVAWLNPFHPEVQQFITDLVVEIITKY HHHHHHHHHHHHCCCCHHCCCCCCCCHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHC NADGIQFDDHMSLPVDFGYDKYTINLYRQETGNPPPPNPQAQAWIKWRADKITAFMVQLN CCCCEEECCCCCCCEECCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHH QAVKARKPNAIFAVSPNYYDFAYKLQLQDWLNWVRLGVVDELVVQVYRNDLQSFNSKLIT HHHHCCCCCEEEEECCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PEILETQQLIPTGIGIMTGLRNRQVSMSQIQSQVRAAQERGLGAVFFYYESLWDYAPEPV HHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCHH AQRQAAFQQLFPNPARRDTSQITARKPSFNTISVPLYTKGSVGQRERGYFLEVAVAGGQP HHHHHHHHHHCCCCCCCCCHHHEECCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCC RRVLMDTGSGGLRVPREFLGNAPINRTGQIVREVLNDGTILEGELVYTSMRMGLIATEEP CEEEEECCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCEEECCEEEEEHHCCEEECCCC VPVQIVTSRQCVAQKPNCSARGNTPFSGIIGVNYAERSLPYNPLRKLPGNLSNGFIIAGD CCEEEEECCHHHCCCCCCCCCCCCCCCCEEECCCHHHCCCCCHHHHCCCCCCCCEEEECC RTSGNSSLILGLTAQNRGGFNLASLTQQPAMNSIPGNRWDSRLNGVCLTISGSAMKNTCN CCCCCCEEEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCEEEEEECHHHHCCCC AKMLADTGVISSFIDFKSASLMGKLKPGRLSPNNTLKLSIPRILDYSLAPGNRNGFNVWN CEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHEEECCCCCCCCCEEEE LNVSPQLDQAMVVNSGIALFDRYNVLFDPVNGQEGFRLRS ECCCCCCCCEEEECCCEEEEECCCEEEECCCCCCCCEECC >Mature Secondary Structure MDCCLESKNSPLSINFEPVMPIEFQPQSIRVNTWLTKLLSIPKKLLFVLQGWRSIKRLFP CCCCCCCCCCCEEEECCCCCCEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VLFALSFTTVLLLQNLTPATAQISPSPRQEIRGVWLTNNDFDILRNRAKVQDTLTQLRRL HHHHHHHHHHHHHHCCCCCCEECCCCCHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHC NFNTIYPVVWNDGYTKYPSAVTQRMGIPYFFRGTEGQDVIADIISQARSQGLLAIPWFEF CCCEEEEEEECCCCCCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCEEEECHHHH GFMAPLTSELASQHPDWLTQKQDGTQTSISAAGEVAWLNPFHPEVQQFITDLVVEIITKY HHHHHHHHHHHHCCCCHHCCCCCCCCHHHHCCCCEEECCCCCHHHHHHHHHHHHHHHHHC NADGIQFDDHMSLPVDFGYDKYTINLYRQETGNPPPPNPQAQAWIKWRADKITAFMVQLN CCCCEEECCCCCCCEECCCCEEEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHHHHHH QAVKARKPNAIFAVSPNYYDFAYKLQLQDWLNWVRLGVVDELVVQVYRNDLQSFNSKLIT HHHHCCCCCEEEEECCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC PEILETQQLIPTGIGIMTGLRNRQVSMSQIQSQVRAAQERGLGAVFFYYESLWDYAPEPV HHHHHHHHHHHCCHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHCCCCHH AQRQAAFQQLFPNPARRDTSQITARKPSFNTISVPLYTKGSVGQRERGYFLEVAVAGGQP HHHHHHHHHHCCCCCCCCCHHHEECCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCC RRVLMDTGSGGLRVPREFLGNAPINRTGQIVREVLNDGTILEGELVYTSMRMGLIATEEP CEEEEECCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCEEECCEEEEEHHCCEEECCCC VPVQIVTSRQCVAQKPNCSARGNTPFSGIIGVNYAERSLPYNPLRKLPGNLSNGFIIAGD CCEEEEECCHHHCCCCCCCCCCCCCCCCEEECCCHHHCCCCCHHHHCCCCCCCCEEEECC RTSGNSSLILGLTAQNRGGFNLASLTQQPAMNSIPGNRWDSRLNGVCLTISGSAMKNTCN CCCCCCEEEEEEEECCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCEEEEEECHHHHCCCC AKMLADTGVISSFIDFKSASLMGKLKPGRLSPNNTLKLSIPRILDYSLAPGNRNGFNVWN CEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHEEECCCCCCCCCEEEE LNVSPQLDQAMVVNSGIALFDRYNVLFDPVNGQEGFRLRS ECCCCCCCCEEEECCCEEEEECCCEEEECCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]