| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
Click here to switch to the map view.
The map label for this gene is serB [C]
Identifier: 75676530
GI number: 75676530
Start: 2565903
End: 2566796
Strand: Direct
Name: serB [C]
Synonym: Nwi_2345
Alternate gene names: 75676530
Gene position: 2565903-2566796 (Clockwise)
Preceding gene: 75676525
Following gene: 75676537
Centisome position: 75.42
GC content: 65.88
Gene sequence:
>894_bases ATGTCGCTCGTCGCCACGCTGATCTGCAATCCGGCCAACCCCGCGCTCGATAGCACGGTGCTGGACGGCGCGCGCGCAAT TCTGGGCAATGCCGGTCCGGCGCAATGGCTGTGGGACGAGGTCGCGGCCGACATTCCCTTCGAAAGCACCGACTCCATCC CGGCCATCACACAGCGCCTGCGCGAGGCGCGTGGCGATCTGCCGATCGACGTGGTGGTCCAGCCGCAGATCGGACGGCGC AAGAAGCTGTTTCTGGCCGATATGGATTCCACCATGATCGGCCAGGAATGCATCGACGAACTCGCCGATTTCGCAGGCCT CAAGGCGCATGTCGCAGCGATCACCGAGCGCGCCATGCGCGGCGAAATGCAATTTGAGGCGGCGTTGCGCGAACGCGTGG CGTTGCTCAAGGGGCTTCCCGTATCCGTGGTCGACGAGGTGCTGGCAAAGCGCATCACGCCGACGCCGGGCGGGCGCGAA CTGGTCATGACCATGCGCGCCAACGGAGCCTATACCTGCCTGATCTCCGGCGGCTTCACGCTCTTCACCGAGGCGGTAGC CGCCCTGATCGGCTTTCACGAGAATCGCGGCAACACGCTGCTGGTCGAAAACGGAAAACTGTCAGGCACGGCCGCGGAGC CGATCGTCGGCCGCGAGGCCAAACTCACGACCCTGATCGAATTGCGTGAGTCCTCCGGTCTCGACGGGCTGGATACGCTG GCGGTGGGCGACGGCGCCAACGACCTCGGCATGATCCAACAGGCGGGCCTGGGCGTCGCCTATCACGCCAAGCCCGCGGT TGCCGCGGCGGCAGCAGCCCGCATCGACCATGGCGACCTGACCGCGCTGCTGTATGCGCAGGGGTACCAGCGCGACGAGT TCGTCAACGCATAG
Upstream 100 bases:
>100_bases GGCAAGCGACAGCGCCAGCGCGGACTTGCCGCTCGCGGTCGGCCCTGCGATAAGCACGGCATCCGTCGCCTCCACCCCCT CATCACGGTTCAACCCGCCC
Downstream 100 bases:
>100_bases ACTCTATAGTGTTTTCGAGCGAAATGGATGACCTGTTCGCGTGAAGAAAACGCGTTAAAACAAGATTATAGAACCTCTTA AACGTGGTTCCGCGAGAGAG
Product: phosphoserine phosphatase SerB
Products: NA
Alternate protein names: PSP; PSPase; O-phosphoserine phosphohydrolase [H]
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MSLVATLICNPANPALDSTVLDGARAILGNAGPAQWLWDEVAADIPFESTDSIPAITQRLREARGDLPIDVVVQPQIGRR KKLFLADMDSTMIGQECIDELADFAGLKAHVAAITERAMRGEMQFEAALRERVALLKGLPVSVVDEVLAKRITPTPGGRE LVMTMRANGAYTCLISGGFTLFTEAVAALIGFHENRGNTLLVENGKLSGTAAEPIVGREAKLTTLIELRESSGLDGLDTL AVGDGANDLGMIQQAGLGVAYHAKPAVAAAAAARIDHGDLTALLYAQGYQRDEFVNA
Sequences:
>Translated_297_residues MSLVATLICNPANPALDSTVLDGARAILGNAGPAQWLWDEVAADIPFESTDSIPAITQRLREARGDLPIDVVVQPQIGRR KKLFLADMDSTMIGQECIDELADFAGLKAHVAAITERAMRGEMQFEAALRERVALLKGLPVSVVDEVLAKRITPTPGGRE LVMTMRANGAYTCLISGGFTLFTEAVAALIGFHENRGNTLLVENGKLSGTAAEPIVGREAKLTTLIELRESSGLDGLDTL AVGDGANDLGMIQQAGLGVAYHAKPAVAAAAAARIDHGDLTALLYAQGYQRDEFVNA >Mature_296_residues SLVATLICNPANPALDSTVLDGARAILGNAGPAQWLWDEVAADIPFESTDSIPAITQRLREARGDLPIDVVVQPQIGRRK KLFLADMDSTMIGQECIDELADFAGLKAHVAAITERAMRGEMQFEAALRERVALLKGLPVSVVDEVLAKRITPTPGGREL VMTMRANGAYTCLISGGFTLFTEAVAALIGFHENRGNTLLVENGKLSGTAAEPIVGREAKLTTLIELRESSGLDGLDTLA VGDGANDLGMIQQAGLGVAYHAKPAVAAAAAARIDHGDLTALLYAQGYQRDEFVNA
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ACT domain [H]
Homologues:
Organism=Homo sapiens, GI46249388, Length=179, Percent_Identity=33.5195530726257, Blast_Score=73, Evalue=4e-13, Organism=Escherichia coli, GI1790849, Length=206, Percent_Identity=42.2330097087379, Blast_Score=148, Evalue=4e-37, Organism=Caenorhabditis elegans, GI115534454, Length=185, Percent_Identity=30.2702702702703, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115534456, Length=185, Percent_Identity=30.2702702702703, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6321647, Length=236, Percent_Identity=36.864406779661, Blast_Score=153, Evalue=3e-38, Organism=Drosophila melanogaster, GI24661601, Length=196, Percent_Identity=29.5918367346939, Blast_Score=75, Evalue=7e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR023190 - InterPro: IPR004469 [H]
Pfam domain/function: PF01842 ACT; PF00702 Hydrolase [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 31432; Mature: 31301
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLVATLICNPANPALDSTVLDGARAILGNAGPAQWLWDEVAADIPFESTDSIPAITQRL CCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH REARGDLPIDVVVQPQIGRRKKLFLADMDSTMIGQECIDELADFAGLKAHVAAITERAMR HHHCCCCCEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH GEMQFEAALRERVALLKGLPVSVVDEVLAKRITPTPGGRELVMTMRANGAYTCLISGGFT CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCHH LFTEAVAALIGFHENRGNTLLVENGKLSGTAAEPIVGREAKLTTLIELRESSGLDGLDTL HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEE AVGDGANDLGMIQQAGLGVAYHAKPAVAAAAAARIDHGDLTALLYAQGYQRDEFVNA EECCCCCHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCHHCCCC >Mature Secondary Structure SLVATLICNPANPALDSTVLDGARAILGNAGPAQWLWDEVAADIPFESTDSIPAITQRL CEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHH REARGDLPIDVVVQPQIGRRKKLFLADMDSTMIGQECIDELADFAGLKAHVAAITERAMR HHHCCCCCEEEEECCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH GEMQFEAALRERVALLKGLPVSVVDEVLAKRITPTPGGRELVMTMRANGAYTCLISGGFT CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCEEEEEEECCCEEEEEEECCHH LFTEAVAALIGFHENRGNTLLVENGKLSGTAAEPIVGREAKLTTLIELRESSGLDGLDTL HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEE AVGDGANDLGMIQQAGLGVAYHAKPAVAAAAAARIDHGDLTALLYAQGYQRDEFVNA EECCCCCHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]