Click here to switch to the map view.

The map label for this gene is fecI [H]

Identifier: 75676488

GI number: 75676488

Start: 2521034

End: 2521534

Strand: Direct

Name: fecI [H]

Synonym: Nwi_2303

Alternate gene names: 75676488

Gene position: 2521034-2521534 (Clockwise)

Preceding gene: 75676476

Following gene: 75676490

Centisome position: 74.1

GC content: 61.08

Gene sequence:

>501_bases
ATGTCGTCCACGACAGAACTGCTCAATATCTTTAAGGCGGAGCAGGGCCAGCTTCAGCGGTTGGTTCGACGCCTTACGGG
AAATCCGCACACCGCTGAGGATGTCGTCCACGATACCTTCATCAAGCTGATGCATCGCGACGTGGGGAAGTGCGATGTCG
GCCTGGTCGTCACCACGGCACGCAACCTCGCGCGCGATGCGATGCGCGCTGAACGCGTGCGTACCTCCTATGCCGAAAGC
GTATCACGCGAGCAGGTGCATGGGGGCGTAGTCGGCCCGGAGGATGCCGTCTCGAGCCGGATGGATCTCGACGCGCTGTT
GCGCGCGCTGGAGACGTTGCCTCGTCGCACCCAGCGCATCTTTCTTCTCAGCAAGGTCGACGGCATGACCTATCCGCAGA
TCGCCCGCAGCCTGGGTATCTCGGTCTCGACCGTTGAGAAAGAAATGATCTCCGCCCTCGAGTTCTGTCGCAACTGGAGA
CGCCGGCGAGAGAACGTTTGA

Upstream 100 bases:

>100_bases
GTATCTCTGTTCGAGTAAGCACCAATAAAGCTGCCAGCCCGAATGTTGTCTCCGGACGATCACTGTCCGAGATCAGGCTG
ATGCGCGACGAGAAAACAGC

Downstream 100 bases:

>100_bases
GCTTCCATGCGCCGTGCAGTCGTGCCGCATCCATAGCGTTTTCGAGCGAAGCATGTCCTTGGGCTCGACCCGAGGATGGA
TGACCGGTTCGCGTGAAGAA

Product: fec I like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MSSTTELLNIFKAEQGQLQRLVRRLTGNPHTAEDVVHDTFIKLMHRDVGKCDVGLVVTTARNLARDAMRAERVRTSYAES
VSREQVHGGVVGPEDAVSSRMDLDALLRALETLPRRTQRIFLLSKVDGMTYPQIARSLGISVSTVEKEMISALEFCRNWR
RRRENV

Sequences:

>Translated_166_residues
MSSTTELLNIFKAEQGQLQRLVRRLTGNPHTAEDVVHDTFIKLMHRDVGKCDVGLVVTTARNLARDAMRAERVRTSYAES
VSREQVHGGVVGPEDAVSSRMDLDALLRALETLPRRTQRIFLLSKVDGMTYPQIARSLGISVSTVEKEMISALEFCRNWR
RRRENV
>Mature_165_residues
SSTTELLNIFKAEQGQLQRLVRRLTGNPHTAEDVVHDTFIKLMHRDVGKCDVGLVVTTARNLARDAMRAERVRTSYAESV
SREQVHGGVVGPEDAVSSRMDLDALLRALETLPRRTQRIFLLSKVDGMTYPQIARSLGISVSTVEKEMISALEFCRNWRR
RRENV

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=155, Percent_Identity=29.0322580645161, Blast_Score=70, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18808; Mature: 18677

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTTELLNIFKAEQGQLQRLVRRLTGNPHTAEDVVHDTFIKLMHRDVGKCDVGLVVTTA
CCHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RNLARDAMRAERVRTSYAESVSREQVHGGVVGPEDAVSSRMDLDALLRALETLPRRTQRI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHH
FLLSKVDGMTYPQIARSLGISVSTVEKEMISALEFCRNWRRRRENV
HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSTTELLNIFKAEQGQLQRLVRRLTGNPHTAEDVVHDTFIKLMHRDVGKCDVGLVVTTA
CHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
RNLARDAMRAERVRTSYAESVSREQVHGGVVGPEDAVSSRMDLDALLRALETLPRRTQRI
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHH
FLLSKVDGMTYPQIARSLGISVSTVEKEMISALEFCRNWRRRRENV
HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]