| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is catD [H]
Identifier: 75676392
GI number: 75676392
Start: 2399789
End: 2400571
Strand: Direct
Name: catD [H]
Synonym: Nwi_2207
Alternate gene names: 75676392
Gene position: 2399789-2400571 (Clockwise)
Preceding gene: 75676383
Following gene: 75676394
Centisome position: 70.54
GC content: 62.45
Gene sequence:
>783_bases ATGCCCATGATCTATGCGGATGGCTGCCTGCTGAATGTTTCCGTCGAGGGGCGCGATGGCGGCCCGACGCTGATGCTGTC GAACGCGCTCGGCTGCACGCTGCAGATGTGGGAGCCGCAGATGGCGGCGCTGTCCAAGCTGTTCCGGATCATCCGCTATG ACCGGCGCGGTCACGGCAAGTCCGGCGTTCCACCCGGTCCCTATTCGATGGAGCGCTTTGGCCGGGACGTGCTGGCGATT CTCGATGACCTCAATATTGCGAGGACGCACTGGTGCGGATTGTCCATGGGCGGCATGGTCGGCCAATGGCTCGGAGCACA TGCGCCGGAACGTTTCGACCGCATCATTCTCGCCAACACGAATTGCTACTATCCCGATCCGGCCAACTGGCACGCCCGCA TCAAGACCGTGAAGGAAGGCGGCCTCGCCGCGATCGCCGAGACCGTGATCAGCGGCTGGCTGACCACGGGCTTTCGCGAA CGCGAACCCCAGATCACCGCGAAGATCAAAGCCATGCTGAGCGCTTCCCCGGTGGAAGGCTATATCGCCTGCTGCGAGGC GCTGAGCACCCTGGATCAGCGCGAGCTGCTGCCCCGCATCAAAAGCCCCACGCTGGTCATCGCCGGACGGCACGACCAGT CTACACCTGTCGCGGCCGGGGAATACATCCGCAGCCGGATTCCTTCCGCCAGCATGACCATTCTCGATGCCGCACATATC TCCAACGTCGAACAATCACATGCCTTCACCGAGGCGGTGACCGGATTTTTGATGCAGCAATAG
Upstream 100 bases:
>100_bases AGCGTCCACCCTTGACGTAGAGGACGACGGCCGCAAAAGAAAGAGACGGCGATGGAATCGTTCCCGTTTCAAACGTTTGT GGCTGGCAGGAGAAACGACA
Downstream 100 bases:
>100_bases AGCGTTTTCGAGCGAAGCATGTCCTCGGGCTTGACCCGAGGATGGATGGCCTGTTCGCGTGAAGAAAACGCGTCAAATCA ATATCTGACAGCCCCGCCTC
Product: alpha/beta hydrolase
Products: NA
Alternate protein names: 3-oxoadipate enol-lactonase II; Beta-ketoadipate enol-lactone hydrolase II; Enol-lactone hydrolase II [H]
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MPMIYADGCLLNVSVEGRDGGPTLMLSNALGCTLQMWEPQMAALSKLFRIIRYDRRGHGKSGVPPGPYSMERFGRDVLAI LDDLNIARTHWCGLSMGGMVGQWLGAHAPERFDRIILANTNCYYPDPANWHARIKTVKEGGLAAIAETVISGWLTTGFRE REPQITAKIKAMLSASPVEGYIACCEALSTLDQRELLPRIKSPTLVIAGRHDQSTPVAAGEYIRSRIPSASMTILDAAHI SNVEQSHAFTEAVTGFLMQQ
Sequences:
>Translated_260_residues MPMIYADGCLLNVSVEGRDGGPTLMLSNALGCTLQMWEPQMAALSKLFRIIRYDRRGHGKSGVPPGPYSMERFGRDVLAI LDDLNIARTHWCGLSMGGMVGQWLGAHAPERFDRIILANTNCYYPDPANWHARIKTVKEGGLAAIAETVISGWLTTGFRE REPQITAKIKAMLSASPVEGYIACCEALSTLDQRELLPRIKSPTLVIAGRHDQSTPVAAGEYIRSRIPSASMTILDAAHI SNVEQSHAFTEAVTGFLMQQ >Mature_259_residues PMIYADGCLLNVSVEGRDGGPTLMLSNALGCTLQMWEPQMAALSKLFRIIRYDRRGHGKSGVPPGPYSMERFGRDVLAIL DDLNIARTHWCGLSMGGMVGQWLGAHAPERFDRIILANTNCYYPDPANWHARIKTVKEGGLAAIAETVISGWLTTGFRER EPQITAKIKAMLSASPVEGYIACCEALSTLDQRELLPRIKSPTLVIAGRHDQSTPVAAGEYIRSRIPSASMTILDAAHIS NVEQSHAFTEAVTGFLMQQ
Specific function: 3-hydroxyphenylpropionate degradation. [C]
COG id: COG0596
COG function: function code R; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000073 - InterPro: IPR012790 [H]
Pfam domain/function: PF00561 Abhydrolase_1 [H]
EC number: =3.1.1.24 [H]
Molecular weight: Translated: 28471; Mature: 28340
Theoretical pI: Translated: 7.50; Mature: 7.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMIYADGCLLNVSVEGRDGGPTLMLSNALGCTLQMWEPQMAALSKLFRIIRYDRRGHGK CCEEEECCEEEEEEEECCCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCC SGVPPGPYSMERFGRDVLAILDDLNIARTHWCGLSMGGMVGQWLGAHAPERFDRIILANT CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHCCCCCHHHCEEEEECC NCYYPDPANWHARIKTVKEGGLAAIAETVISGWLTTGFREREPQITAKIKAMLSASPVEG CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHH YIACCEALSTLDQRELLPRIKSPTLVIAGRHDQSTPVAAGEYIRSRIPSASMTILDAAHI HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH SNVEQSHAFTEAVTGFLMQQ CCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure PMIYADGCLLNVSVEGRDGGPTLMLSNALGCTLQMWEPQMAALSKLFRIIRYDRRGHGK CEEEECCEEEEEEEECCCCCCEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCC SGVPPGPYSMERFGRDVLAILDDLNIARTHWCGLSMGGMVGQWLGAHAPERFDRIILANT CCCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHHHHHCCCCCHHHCEEEEECC NCYYPDPANWHARIKTVKEGGLAAIAETVISGWLTTGFREREPQITAKIKAMLSASPVEG CCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHH YIACCEALSTLDQRELLPRIKSPTLVIAGRHDQSTPVAAGEYIRSRIPSASMTILDAAHI HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH SNVEQSHAFTEAVTGFLMQQ CCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8125318; 670169 [H]