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The map label for this gene is rbcR [H]

Identifier: 75676178

GI number: 75676178

Start: 2174913

End: 2175848

Strand: Direct

Name: rbcR [H]

Synonym: Nwi_1988

Alternate gene names: 75676178

Gene position: 2174913-2175848 (Clockwise)

Preceding gene: 75676162

Following gene: 75676183

Centisome position: 63.93

GC content: 62.39

Gene sequence:

>936_bases
ATGCATCTCACTCTCAGACAACTCCAGATTTTCGACGCTGTGTTGCAACAGGAGAGCTTCACGCGCGCGGCTGACGCTTT
GCATCTCACACAGCCGGCGGTCTCGATGCAGATGCGGCAGTTGGAAGAGCAGATCGGCGTGCCGCTGTTCGACCATGTCG
GAAAAAAAATCCGGCCGACCGACGCGGGCCGCGAGTTGCACCGTCACACCACGCTTATCGGCGCCAAGATGCGCGACCTC
GAGTCGGCGATGGAAGAGTTTCGCGGCGTCCATCGCGGAGAACTCGACCTCACCGTGGCCAGCACCGCCAATTACTTCAT
GCCTAAGCTCATCGCAGCTTTCTGCGCCTGCCACGCCAGAGTGCAGGTGCGCCTGCAGGTGTCCAACCAGACGCATATCC
TTGAGACGCTATCGGCGACGAATCAGGATCTCGCCATCATGGGGCAGCCGCCGGAAGACAGCGAGCTCGTCGCGCGCGCG
TTCCTCGACAACCCGCTGATGGTCATCGCCTCGCCCGAGCATCCGCTGGCCGGACGGCGCAAGATCCCGCTGACGGAATT
GGGTTGCCAGCCCTTCATTACCCGCGAGCCCGGCTCCGGTACGCGCAATGCCGCCGAGCGGCATTTTTCGCGTCTTGGCG
TGGAATTCCACTCGGTCATGGAAATGAGCAGCAACGAGGCCATCAAGCAGGCCGTCGAAGCCGGGCTGGGGTTAGGCATT
CTTTCGCTGCACACCCTGGAACTAGAGCTGGCGATACGCCGTCTCGTCACCCTCGATGTGGAAAGCTTCCCCATCGTGCG
ACAATGGTTCGTCGTCCACCGCAAGGGCAAGCGGCTGTCCGCGGTGGCGCAGTCCTTCCTGACGTTCATCACTCAGCAGG
CGCGGCCGCTGGCCTCGCCCAAGCATCCGCAGCAAGCGCCGCTTCTCATCCCATGA

Upstream 100 bases:

>100_bases
CCGGCCCCGCGATTCACGAGCCCTGAACATAGAAGACGCCCCACATAAACTCTAATTGTTATTTTTGATCATATGCATTA
GAGTAACTTATATATTGGCC

Downstream 100 bases:

>100_bases
ATTTCACCAGGCGGCCGACCTGAATGTCGCTGACGAGAATCACGCCTGAATGCGCCTCGAAAAACGGCAGGAAGCCCTCG
AGCAGCGAGTCGAACAGACT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MHLTLRQLQIFDAVLQQESFTRAADALHLTQPAVSMQMRQLEEQIGVPLFDHVGKKIRPTDAGRELHRHTTLIGAKMRDL
ESAMEEFRGVHRGELDLTVASTANYFMPKLIAAFCACHARVQVRLQVSNQTHILETLSATNQDLAIMGQPPEDSELVARA
FLDNPLMVIASPEHPLAGRRKIPLTELGCQPFITREPGSGTRNAAERHFSRLGVEFHSVMEMSSNEAIKQAVEAGLGLGI
LSLHTLELELAIRRLVTLDVESFPIVRQWFVVHRKGKRLSAVAQSFLTFITQQARPLASPKHPQQAPLLIP

Sequences:

>Translated_311_residues
MHLTLRQLQIFDAVLQQESFTRAADALHLTQPAVSMQMRQLEEQIGVPLFDHVGKKIRPTDAGRELHRHTTLIGAKMRDL
ESAMEEFRGVHRGELDLTVASTANYFMPKLIAAFCACHARVQVRLQVSNQTHILETLSATNQDLAIMGQPPEDSELVARA
FLDNPLMVIASPEHPLAGRRKIPLTELGCQPFITREPGSGTRNAAERHFSRLGVEFHSVMEMSSNEAIKQAVEAGLGLGI
LSLHTLELELAIRRLVTLDVESFPIVRQWFVVHRKGKRLSAVAQSFLTFITQQARPLASPKHPQQAPLLIP
>Mature_311_residues
MHLTLRQLQIFDAVLQQESFTRAADALHLTQPAVSMQMRQLEEQIGVPLFDHVGKKIRPTDAGRELHRHTTLIGAKMRDL
ESAMEEFRGVHRGELDLTVASTANYFMPKLIAAFCACHARVQVRLQVSNQTHILETLSATNQDLAIMGQPPEDSELVARA
FLDNPLMVIASPEHPLAGRRKIPLTELGCQPFITREPGSGTRNAAERHFSRLGVEFHSVMEMSSNEAIKQAVEAGLGLGI
LSLHTLELELAIRRLVTLDVESFPIVRQWFVVHRKGKRLSAVAQSFLTFITQQARPLASPKHPQQAPLLIP

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=32.5259515570934, Blast_Score=144, Evalue=6e-36,
Organism=Escherichia coli, GI157672245, Length=224, Percent_Identity=33.0357142857143, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787530, Length=244, Percent_Identity=28.6885245901639, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1788748, Length=306, Percent_Identity=26.1437908496732, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790399, Length=240, Percent_Identity=23.75, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI145693105, Length=241, Percent_Identity=25.3112033195021, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789204, Length=243, Percent_Identity=26.3374485596708, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1786401, Length=301, Percent_Identity=27.906976744186, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI87082132, Length=295, Percent_Identity=25.4237288135593, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1790208, Length=249, Percent_Identity=26.9076305220884, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787601, Length=185, Percent_Identity=27.5675675675676, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787879, Length=290, Percent_Identity=25.5172413793103, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788887, Length=242, Percent_Identity=26.8595041322314, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788296, Length=246, Percent_Identity=26.0162601626016, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787806, Length=296, Percent_Identity=25.6756756756757, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1787589, Length=262, Percent_Identity=25.1908396946565, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34697; Mature: 34697

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHLTLRQLQIFDAVLQQESFTRAADALHLTQPAVSMQMRQLEEQIGVPLFDHVGKKIRPT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCC
DAGRELHRHTTLIGAKMRDLESAMEEFRGVHRGELDLTVASTANYFMPKLIAAFCACHAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHE
VQVRLQVSNQTHILETLSATNQDLAIMGQPPEDSELVARAFLDNPLMVIASPEHPLAGRR
EEEEEEECCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCC
KIPLTELGCQPFITREPGSGTRNAAERHFSRLGVEFHSVMEMSSNEAIKQAVEAGLGLGI
CCCHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHH
LSLHTLELELAIRRLVTLDVESFPIVRQWFVVHRKGKRLSAVAQSFLTFITQQARPLASP
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
KHPQQAPLLIP
CCCCCCCCCCC
>Mature Secondary Structure
MHLTLRQLQIFDAVLQQESFTRAADALHLTQPAVSMQMRQLEEQIGVPLFDHVGKKIRPT
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCC
DAGRELHRHTTLIGAKMRDLESAMEEFRGVHRGELDLTVASTANYFMPKLIAAFCACHAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHE
VQVRLQVSNQTHILETLSATNQDLAIMGQPPEDSELVARAFLDNPLMVIASPEHPLAGRR
EEEEEEECCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCC
KIPLTELGCQPFITREPGSGTRNAAERHFSRLGVEFHSVMEMSSNEAIKQAVEAGLGLGI
CCCHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHH
LSLHTLELELAIRRLVTLDVESFPIVRQWFVVHRKGKRLSAVAQSFLTFITQQARPLASP
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCC
KHPQQAPLLIP
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]