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The map label for this gene is xerD [C]

Identifier: 75675757

GI number: 75675757

Start: 1708146

End: 1709396

Strand: Direct

Name: xerD [C]

Synonym: Nwi_1565

Alternate gene names: 75675757

Gene position: 1708146-1709396 (Clockwise)

Preceding gene: 75675756

Following gene: 75675759

Centisome position: 50.21

GC content: 63.95

Gene sequence:

>1251_bases
ATGTCCGTCTATCCCATCAAGGGCTCCCGATACTGGCAGTTCGACTTTCAAATCTCAGGTTATCGCTTTTCCGGATCAAC
AAAAAAGACGTGTGAACGTGACGCGAAGGCCGTCGAGACCGCGGAGAAAGCCAAAGCCCGCGAGCTGGTCAAATCCATCA
CCGTCGCCGCGGGCGAACCCATAAGGCTCGGTGCCGCCTGCGACCGCTGGTGGGCCGAGGTTGGCAGCCGGGGCTCCGAG
CGCGACATGCAGCATGCGCTGGGCCGGATCCGCGACATTATCGGCGACCGGACGTTTCTGCACGACATCACCGACGACAC
GCTCTCCCGCCTGATCGCCGAGCGGCGGCAGGACCGGGTCCGCGCCGGCCGCGACGATAACGGAGTGCAGTTGTGGCGCC
CGATCAGCAACAAACGGGTGAACAAGACCACCACGGGCCTGTTGCGCCGCGTCATCAACCGCGCAGTCGACAACTGGAAC
GCCGTGGTGCCGCGAGCGCCGAAATGGGAGAAGCACTGGCTCAAAGAGACCAAACGGCCAATTCGCGAGATCGGTCACGC
CGAGGAAGCCGCGATCGACGCCGAGGAGGATGCCGACTATGCGGCGCTACGGCGCTTCGCGGTCATTACCGGGCTGCGCC
GCGGCAGCGTGTTGCTGCGATGGCCCCAGGTTGACTTTGAGCAGGCCGTAGTGCGCGTCATCACCAAAGGGGGCGTCCCG
CGCGTGATCCCGCTGACGAAAGAGGCCTACGCCCTTCTGTGGGCCCGCCGGGGCCACCACCCGGAGGCCGTCTTCACCTT
CATCGCCCGCCGCACCAACAAGAACGCCAAGAACGGGCAGCAGTACATCCGGGGCCAACGCTACCCGATCACGGTCTACG
GCTTCGTCTCACACTGGCGCTACGCCACCAAGCGCGCCGGCGTGAAGGCCCGAATCCACGACATGCGCCATACCGCTGCC
ACCCGCACCCTGCGAGAGACGGGCAACCTCAGGCTCGTGCAGAAGCTGCTTGGCCATACCGACATCAAAATCACCGCGGA
ATTCTATGCCGACGTGCTGGTTGAGGATCTACGCGAGGGGATGGAGCGCACCAGCGCCGCCGAGCGCCAGGCGGTTGCAA
AGCTAGAATCAGGTCGCGCCGTCGAGCGAGAGTGTGCGGTAGAAGTCGCGGGGAATCCCTGTAATAAATCCCGAGGCACT
TCAGCAACAACCGACAAGCCTTTGCGCTCACGGCGCAATTCGGAACCGTAG

Upstream 100 bases:

>100_bases
TGAGGGGCCGGATCAAGGGCTTTGGCCGGAAGCATCCGCGCTGGGTCTTCACCGCCGCCGACGTCGCAGGATTCTTCCTG
ACGCTGCACGAGATTGCCGA

Downstream 100 bases:

>100_bases
TAGCGGATTTCTACTCCGCGGGTTGCAGGTTCGAATCCTGCCGGGATCGCCAAAATCGCCGCTACGCCGAGCAGGCTTAC
ATTCATTCATCCGCCTAAAA

Product: phage integrase

Products: NA

Alternate protein names: Phage Integrase; Integrase; Site-Specific Integrase/Recombinase

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MSVYPIKGSRYWQFDFQISGYRFSGSTKKTCERDAKAVETAEKAKARELVKSITVAAGEPIRLGAACDRWWAEVGSRGSE
RDMQHALGRIRDIIGDRTFLHDITDDTLSRLIAERRQDRVRAGRDDNGVQLWRPISNKRVNKTTTGLLRRVINRAVDNWN
AVVPRAPKWEKHWLKETKRPIREIGHAEEAAIDAEEDADYAALRRFAVITGLRRGSVLLRWPQVDFEQAVVRVITKGGVP
RVIPLTKEAYALLWARRGHHPEAVFTFIARRTNKNAKNGQQYIRGQRYPITVYGFVSHWRYATKRAGVKARIHDMRHTAA
TRTLRETGNLRLVQKLLGHTDIKITAEFYADVLVEDLREGMERTSAAERQAVAKLESGRAVERECAVEVAGNPCNKSRGT
SATTDKPLRSRRNSEP

Sequences:

>Translated_416_residues
MSVYPIKGSRYWQFDFQISGYRFSGSTKKTCERDAKAVETAEKAKARELVKSITVAAGEPIRLGAACDRWWAEVGSRGSE
RDMQHALGRIRDIIGDRTFLHDITDDTLSRLIAERRQDRVRAGRDDNGVQLWRPISNKRVNKTTTGLLRRVINRAVDNWN
AVVPRAPKWEKHWLKETKRPIREIGHAEEAAIDAEEDADYAALRRFAVITGLRRGSVLLRWPQVDFEQAVVRVITKGGVP
RVIPLTKEAYALLWARRGHHPEAVFTFIARRTNKNAKNGQQYIRGQRYPITVYGFVSHWRYATKRAGVKARIHDMRHTAA
TRTLRETGNLRLVQKLLGHTDIKITAEFYADVLVEDLREGMERTSAAERQAVAKLESGRAVERECAVEVAGNPCNKSRGT
SATTDKPLRSRRNSEP
>Mature_415_residues
SVYPIKGSRYWQFDFQISGYRFSGSTKKTCERDAKAVETAEKAKARELVKSITVAAGEPIRLGAACDRWWAEVGSRGSER
DMQHALGRIRDIIGDRTFLHDITDDTLSRLIAERRQDRVRAGRDDNGVQLWRPISNKRVNKTTTGLLRRVINRAVDNWNA
VVPRAPKWEKHWLKETKRPIREIGHAEEAAIDAEEDADYAALRRFAVITGLRRGSVLLRWPQVDFEQAVVRVITKGGVPR
VIPLTKEAYALLWARRGHHPEAVFTFIARRTNKNAKNGQQYIRGQRYPITVYGFVSHWRYATKRAGVKARIHDMRHTAAT
RTLRETGNLRLVQKLLGHTDIKITAEFYADVLVEDLREGMERTSAAERQAVAKLESGRAVERECAVEVAGNPCNKSRGTS
ATTDKPLRSRRNSEP

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47343; Mature: 47212

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVYPIKGSRYWQFDFQISGYRFSGSTKKTCERDAKAVETAEKAKARELVKSITVAAGEP
CCEECCCCCEEEEEEEEEECEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
IRLGAACDRWWAEVGSRGSERDMQHALGRIRDIIGDRTFLHDITDDTLSRLIAERRQDRV
EEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHH
RAGRDDNGVQLWRPISNKRVNKTTTGLLRRVINRAVDNWNAVVPRAPKWEKHWLKETKRP
HCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
IREIGHAEEAAIDAEEDADYAALRRFAVITGLRRGSVLLRWPQVDFEQAVVRVITKGGVP
HHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCC
RVIPLTKEAYALLWARRGHHPEAVFTFIARRTNKNAKNGQQYIRGQRYPITVYGFVSHWR
CEEECCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEEHHHHHH
YATKRAGVKARIHDMRHTAATRTLRETGNLRLVQKLLGHTDIKITAEFYADVLVEDLREG
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHH
MERTSAAERQAVAKLESGRAVERECAVEVAGNPCNKSRGTSATTDKPLRSRRNSEP
HHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCCCCCCCCCCCCCCHHHHHCCCCCC
>Mature Secondary Structure 
SVYPIKGSRYWQFDFQISGYRFSGSTKKTCERDAKAVETAEKAKARELVKSITVAAGEP
CEECCCCCEEEEEEEEEECEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
IRLGAACDRWWAEVGSRGSERDMQHALGRIRDIIGDRTFLHDITDDTLSRLIAERRQDRV
EEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHH
RAGRDDNGVQLWRPISNKRVNKTTTGLLRRVINRAVDNWNAVVPRAPKWEKHWLKETKRP
HCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
IREIGHAEEAAIDAEEDADYAALRRFAVITGLRRGSVLLRWPQVDFEQAVVRVITKGGVP
HHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCC
RVIPLTKEAYALLWARRGHHPEAVFTFIARRTNKNAKNGQQYIRGQRYPITVYGFVSHWR
CEEECCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHCCCCCCEEEEEHHHHHH
YATKRAGVKARIHDMRHTAATRTLRETGNLRLVQKLLGHTDIKITAEFYADVLVEDLREG
HHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHH
MERTSAAERQAVAKLESGRAVERECAVEVAGNPCNKSRGTSATTDKPLRSRRNSEP
HHHHHHHHHHHHHHHHCCCHHHHHHHHEECCCCCCCCCCCCCCCCHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA