Click here to switch to the map view.

The map label for this gene is yagA [H]

Identifier: 75675733

GI number: 75675733

Start: 1686140

End: 1687627

Strand: Direct

Name: yagA [H]

Synonym: Nwi_1541

Alternate gene names: 75675733

Gene position: 1686140-1687627 (Clockwise)

Preceding gene: 75675728

Following gene: 75675750

Centisome position: 49.56

GC content: 59.48

Gene sequence:

>1488_bases
ATGCAGGGGCGTGACATTCGGCGGCGTTACTTTTCAAAGAACTTCAGGGTCTGTCCGCCGTCAGGGCTCTTGAGACAGTT
TAGGAGTTTTCGGGAAGGGAGGATTTCTGGATCATCGCAGCCAATTTGGAGCGCAGATGAGACAGAAATCCGGACCAGGC
AAAGCGCCGGCAGAACAGGTGCTGAAGGACATCCGACGGCAGACGCGCCGGCATTATTCGGCGGAGGAGAAGATCCGTAT
CGTGCTGGAAGGACTGCGCGGCGAGGAGAACATCTCCGAGCTTTGCCGCCGCGAAGGCATCGCCGCCTCGATGTATTACG
GTTGGTCCAAGGAGTTCCTGGAAGCCGGCAAGCGCCGGTTGGCGGGCGACACGGCACGTGCCGCAACCTCTGGCGAGGTG
AAAGATCTTCGTCGGGAAGCCTCGGCGTTGAAGGAAGTCGTCGCCGATCTCACCCTGGAGAACCGTCTGCTAAAAAAAAG
CATGAACGGGGATGGGGAGAACGAGGCATGAGGTATCCTGCGTCCGAGAAAGCCGAGATCATCGCGTTGGTGGAGCAGTC
GCATTTGCCGGCCAAACGCACGCTGGACAAGCTCGGCATCCCCCGCGCCACGTTTTATAGATGGTACGATCGCTACCGCG
CGGGCGGCATTGAGGCCCTGGCAGATCACCGCTCTCGACCGGATCGGGTCTGGAATCGTATCCCGGATGACGTCCGCGGC
CAGATCATCGACCTGGCATTGGAGCTTCCGGAACTATCGCCGCGAGAGCTCGCCGTGCGGTTTACCGACGAGAGAAAGTA
CTTTGTCTCGGAGGCTTCGGTCTATCGGCTGCTGAAGGCGCACGACCTCATCACCAGTCCGGCCTATGTAGTGATCAAGG
CGGCGAACGAGTTCAAGGACAAGACCACCGCCGCCAACCAGCTCTGGCAGACCGACTTCACCTACCTGAAGATCACCGGC
TGGGGCTGGTACTATCTATCGACGGTGCTCGACGACTTCTCGCGCTACATCGTCGCCTGGAGGTTAGGTCCCACGATGTG
TGCCTCCGACGTCACGGCTACGCTCGATCAGGCACTGGCCGCCTCTGGTCTGGATCACGTCAGCGTCAGGCAGCGGCCCC
GGCTTCTCAGCGACAATGGTTCGAGTTACGTCGCGGATGATCTGGCCACGTGGCTCAGGGCCAAGGACATGCAGCATGTG
CGCGGAGCGCCGTATCATCCTCAGACTCAGGGCAAGATCGAGCGTTGGCATCAAACGTTGAAGAACCGCATCCTGCTTGA
GAACTACTATTTACCGGACGACCTCAAACGTCAGGTCGCCGCGTTCGTCGAACACTATAATCATGACCGCTACCACGAGA
GCATCGGCAACGTTACACCTGCCGACGTCTACTTCGGCAGGGCTGAGACAATCCTCGCCGAACGACACCGCATCAAGCGC
GACACCATCGCAAACCGTCGCTTGCAGCATCAGCTGCAGGCCGCTTAA

Upstream 100 bases:

>100_bases
TTCAAAATTGTCGGATGCGATCGTTAGAAACGTCTATGCCGAAATCTATTTTTATGGCGCGCTCGGCGCAGCTTTTTTGG
TCGGGGTGCTATTCCACATC

Downstream 100 bases:

>100_bases
ACTCTAACCACAGATGAACCAGAGCCTCTCTTCTAGAAATGTCTGATCAGTCTCAAATTATCTGACGACGGACAAGTGGT
ATAGAAGTGCACGTAAGGCT

Product: helix-turn-helix, Fis-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MQGRDIRRRYFSKNFRVCPPSGLLRQFRSFREGRISGSSQPIWSADETEIRTRQSAGRTGAEGHPTADAPALFGGGEDPY
RAGRTARRGEHLRALPPRRHRRLDVLRLVQGVPGSRQAPVGGRHGTCRNLWRGERSSSGSLGVEGSRRRSHPGEPSAKKK
HERGWGERGMRYPASEKAEIIALVEQSHLPAKRTLDKLGIPRATFYRWYDRYRAGGIEALADHRSRPDRVWNRIPDDVRG
QIIDLALELPELSPRELAVRFTDERKYFVSEASVYRLLKAHDLITSPAYVVIKAANEFKDKTTAANQLWQTDFTYLKITG
WGWYYLSTVLDDFSRYIVAWRLGPTMCASDVTATLDQALAASGLDHVSVRQRPRLLSDNGSSYVADDLATWLRAKDMQHV
RGAPYHPQTQGKIERWHQTLKNRILLENYYLPDDLKRQVAAFVEHYNHDRYHESIGNVTPADVYFGRAETILAERHRIKR
DTIANRRLQHQLQAA

Sequences:

>Translated_495_residues
MQGRDIRRRYFSKNFRVCPPSGLLRQFRSFREGRISGSSQPIWSADETEIRTRQSAGRTGAEGHPTADAPALFGGGEDPY
RAGRTARRGEHLRALPPRRHRRLDVLRLVQGVPGSRQAPVGGRHGTCRNLWRGERSSSGSLGVEGSRRRSHPGEPSAKKK
HERGWGERGMRYPASEKAEIIALVEQSHLPAKRTLDKLGIPRATFYRWYDRYRAGGIEALADHRSRPDRVWNRIPDDVRG
QIIDLALELPELSPRELAVRFTDERKYFVSEASVYRLLKAHDLITSPAYVVIKAANEFKDKTTAANQLWQTDFTYLKITG
WGWYYLSTVLDDFSRYIVAWRLGPTMCASDVTATLDQALAASGLDHVSVRQRPRLLSDNGSSYVADDLATWLRAKDMQHV
RGAPYHPQTQGKIERWHQTLKNRILLENYYLPDDLKRQVAAFVEHYNHDRYHESIGNVTPADVYFGRAETILAERHRIKR
DTIANRRLQHQLQAA
>Mature_495_residues
MQGRDIRRRYFSKNFRVCPPSGLLRQFRSFREGRISGSSQPIWSADETEIRTRQSAGRTGAEGHPTADAPALFGGGEDPY
RAGRTARRGEHLRALPPRRHRRLDVLRLVQGVPGSRQAPVGGRHGTCRNLWRGERSSSGSLGVEGSRRRSHPGEPSAKKK
HERGWGERGMRYPASEKAEIIALVEQSHLPAKRTLDKLGIPRATFYRWYDRYRAGGIEALADHRSRPDRVWNRIPDDVRG
QIIDLALELPELSPRELAVRFTDERKYFVSEASVYRLLKAHDLITSPAYVVIKAANEFKDKTTAANQLWQTDFTYLKITG
WGWYYLSTVLDDFSRYIVAWRLGPTMCASDVTATLDQALAASGLDHVSVRQRPRLLSDNGSSYVADDLATWLRAKDMQHV
RGAPYHPQTQGKIERWHQTLKNRILLENYYLPDDLKRQVAAFVEHYNHDRYHESIGNVTPADVYFGRAETILAERHRIKR
DTIANRRLQHQLQAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=303, Percent_Identity=28.7128712871287, Blast_Score=92, Evalue=7e-20,
Organism=Escherichia coli, GI1788405, Length=307, Percent_Identity=23.4527687296417, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1787263, Length=307, Percent_Identity=23.4527687296417, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786753, Length=307, Percent_Identity=23.4527687296417, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786570, Length=307, Percent_Identity=23.4527687296417, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786490, Length=307, Percent_Identity=23.4527687296417, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 56604; Mature: 56604

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGRDIRRRYFSKNFRVCPPSGLLRQFRSFREGRISGSSQPIWSADETEIRTRQSAGRTG
CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCC
AEGHPTADAPALFGGGEDPYRAGRTARRGEHLRALPPRRHRRLDVLRLVQGVPGSRQAPV
CCCCCCCCCCCCCCCCCCHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
GGRHGTCRNLWRGERSSSGSLGVEGSRRRSHPGEPSAKKKHERGWGERGMRYPASEKAEI
CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCE
IALVEQSHLPAKRTLDKLGIPRATFYRWYDRYRAGGIEALADHRSRPDRVWNRIPDDVRG
EEEHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHCCCHHHHH
QIIDLALELPELSPRELAVRFTDERKYFVSEASVYRLLKAHDLITSPAYVVIKAANEFKD
HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
KTTAANQLWQTDFTYLKITGWGWYYLSTVLDDFSRYIVAWRLGPTMCASDVTATLDQALA
HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHEEHEECCCHHHHHHHHHHHHHHHH
ASGLDHVSVRQRPRLLSDNGSSYVADDLATWLRAKDMQHVRGAPYHPQTQGKIERWHQTL
HCCCCHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
KNRILLENYYLPDDLKRQVAAFVEHYNHDRYHESIGNVTPADVYFGRAETILAERHRIKR
HHCEEHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHH
DTIANRRLQHQLQAA
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MQGRDIRRRYFSKNFRVCPPSGLLRQFRSFREGRISGSSQPIWSADETEIRTRQSAGRTG
CCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCC
AEGHPTADAPALFGGGEDPYRAGRTARRGEHLRALPPRRHRRLDVLRLVQGVPGSRQAPV
CCCCCCCCCCCCCCCCCCHHHHCCHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
GGRHGTCRNLWRGERSSSGSLGVEGSRRRSHPGEPSAKKKHERGWGERGMRYPASEKAEI
CCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCE
IALVEQSHLPAKRTLDKLGIPRATFYRWYDRYRAGGIEALADHRSRPDRVWNRIPDDVRG
EEEHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHCCCCHHHHHHCCCHHHHH
QIIDLALELPELSPRELAVRFTDERKYFVSEASVYRLLKAHDLITSPAYVVIKAANEFKD
HHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
KTTAANQLWQTDFTYLKITGWGWYYLSTVLDDFSRYIVAWRLGPTMCASDVTATLDQALA
HHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHEEHEECCCHHHHHHHHHHHHHHHH
ASGLDHVSVRQRPRLLSDNGSSYVADDLATWLRAKDMQHVRGAPYHPQTQGKIERWHQTL
HCCCCHHHHHHCCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
KNRILLENYYLPDDLKRQVAAFVEHYNHDRYHESIGNVTPADVYFGRAETILAERHRIKR
HHCEEHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHCHHHHHHHHHHHHHH
DTIANRRLQHQLQAA
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]