Definition Nitrobacter winogradskyi Nb-255, complete genome.
Accession NC_007406
Length 3,402,093

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The map label for this gene is yejA [C]

Identifier: 75675702

GI number: 75675702

Start: 1638492

End: 1640354

Strand: Direct

Name: yejA [C]

Synonym: Nwi_1510

Alternate gene names: 75675702

Gene position: 1638492-1640354 (Clockwise)

Preceding gene: 75675700

Following gene: 75675703

Centisome position: 48.16

GC content: 62.1

Gene sequence:

>1863_bases
GTGAGCAAGTTCGAATCAAAATGGACCCGGTATTGCCGGCCGCCGCGCGAGCGCTGCCGGACGGTGGTGGGTTTGGCGCT
CATAGTCGGGCTGCTCGCCGCCGGGTACCAGGAGGTTTCCGCGGCGGATTCCGGTTACGCCATCGCGATGCATGGCGAAC
CGGCCCTGCCGCCTGATTTCAGCCGGATGCCCTATGCCGATCCGGACGCGCCCAAGGGTGGCCGGCTGGTTCAAAGTGTT
CCCGGTAGTTTCGACAGCCTCAATCCCTTCATCGTCAAAGGCGTCGCGCTTCAGCAAATTCGGGGTTTCGTGGTCGAGAG
CCTGATGGCCCGTGGTCACGACGAACCCTTCACGCTCTACGGTCTGCTGGCGGAAAGGATTGAAACCGACGATGCCCGCA
CCTACGCCACCTTTCATCTGAATCCACAGGCGCGCTTTTACGACGGGCGGTCCGTCCGTGCCGAAGACGTGCTCTTTTCC
TGGCAACTTCTCCGGGACAAGGGCCGACCCAACCATCGTCAGTATTATTCGAAGGTTGCGACGGCGGAGGCGATCGATGA
GCGCACGGTGCGTTTCGATTTCGGGGGAACCACGGATCGCGAACTGCCCCTGATCCTCGGCCTGATGCCTGTTCTGCCGA
AACATGCCGTCGATGCCGCCACTTTCGAGCAGACCTCGATGACCGCCCCGCTGGGGTCCGGGCCGTATCGCGTGACCGCC
GTCAAGCCTGGAGCCAGCGTGACGCTGACGCGCAACCCGGATTATTGGGGACGCAACCTGCCGGTCAATCGCGGCCTGTG
GAACTTCGACGAGATCAGGTTCGACTACTACCGCGAAGCCAACAGTCAGTTCGAGGCGTTCAAGCGCGGTCTGTATGACT
TTCGTGTCGAGAGTGAACCACTGCGCTGGCACGAAGGCTACAACTTCCCGGCAGCGGGCGATGGTCAGCTTGTCCGCGAA
GCTATTAAGACCGGCCTGCCCGCGCCCTCGGAATATCTGGTGTTCAATACGCGGCGGCCGATGTTTTCCGACATTCGCGT
TCGCGAGGCGCTGACGCTGCTGTTCGATTTCGAGTGGATCAACCGAAACTATTTTTTCGGACTCTATAGTCGCGCCGGCG
GCTTCTTCGCGGGATCGGAACTGTCCGCCTACGCGCGCGCCGCCGCCGACGGAGAGCGGTCGCTGCTGAAGCCGTTTCCA
TCGGCCGTGCGAAGCGATATCCTCGACGGCAGCTACCGCCTTCCCGTGACCGACGGTTCAGGCCGGGACCGCGAAGCCTT
ACGCGCCGCTCTCGCGCTTCTGTCGCAGGCAGGTTACGAGTTTGACGGCACGGTCCTGCGCCATCGCTCGACCAAGGCTC
CCCTTGCCTTTGAAATTCTGGTGACGACCCGCGATCAGGAGCGGATCGCGCTAGCTTACGCGCGCGATCTCAAGCGCGCC
GGCATTGAGGTGTCCGTGCGCTCGGTCGATGGCGTGCAGTTCGATCAGCGTCGGCTGGCGTTTGATTTTGACATGATCCA
GAACCGCTGGGATCAATCGCTGTCGCCCGGCAACGAACAGTCCTTCTACTGGGGCAGCGAAGCCGCCGACATTCCGGGCA
CCCGCAATTACATGGGCGTGAAGAATCCCGCGATCGACGCCATGATCGCCGCCATGCTCAAGGCCAGGGAGCGGCCGGGC
TTCGTGGATGCGGTACGCGCGCTCGACCGGGTCCTGATGTCCGGATTTTACGTGATTCCGGTTTACAACGTTCGAGAACA
ATGGATCGCGCGCTGGAATCGGATAGAACGACCGGCAGCGACCGCGTTGACTGGATACATCCCTGAAACTTGGTGGCGAA
GGCCGCCGAAGCCCGGCAAGTGA

Upstream 100 bases:

>100_bases
TGCCCGCCTTCAATACTAGGGCGCATAAAAAGATCAATGGCAACATACGCTTTTGACGTGCCTTTCAAACCGCGTCGCGG
CGGTTGTGATAAAATTTCTT

Downstream 100 bases:

>100_bases
CTTCGTGCTCCAGAACAATTCATCGCCTACGCTGGATGAACTCTTCGACCGCATCCTCGTCCGGCAGCCGGACCGGCCGG
CGCTGATCGATCCGCCGGAC

Product: extracellular solute-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 620; Mature: 619

Protein sequence:

>620_residues
MSKFESKWTRYCRPPRERCRTVVGLALIVGLLAAGYQEVSAADSGYAIAMHGEPALPPDFSRMPYADPDAPKGGRLVQSV
PGSFDSLNPFIVKGVALQQIRGFVVESLMARGHDEPFTLYGLLAERIETDDARTYATFHLNPQARFYDGRSVRAEDVLFS
WQLLRDKGRPNHRQYYSKVATAEAIDERTVRFDFGGTTDRELPLILGLMPVLPKHAVDAATFEQTSMTAPLGSGPYRVTA
VKPGASVTLTRNPDYWGRNLPVNRGLWNFDEIRFDYYREANSQFEAFKRGLYDFRVESEPLRWHEGYNFPAAGDGQLVRE
AIKTGLPAPSEYLVFNTRRPMFSDIRVREALTLLFDFEWINRNYFFGLYSRAGGFFAGSELSAYARAAADGERSLLKPFP
SAVRSDILDGSYRLPVTDGSGRDREALRAALALLSQAGYEFDGTVLRHRSTKAPLAFEILVTTRDQERIALAYARDLKRA
GIEVSVRSVDGVQFDQRRLAFDFDMIQNRWDQSLSPGNEQSFYWGSEAADIPGTRNYMGVKNPAIDAMIAAMLKARERPG
FVDAVRALDRVLMSGFYVIPVYNVREQWIARWNRIERPAATALTGYIPETWWRRPPKPGK

Sequences:

>Translated_620_residues
MSKFESKWTRYCRPPRERCRTVVGLALIVGLLAAGYQEVSAADSGYAIAMHGEPALPPDFSRMPYADPDAPKGGRLVQSV
PGSFDSLNPFIVKGVALQQIRGFVVESLMARGHDEPFTLYGLLAERIETDDARTYATFHLNPQARFYDGRSVRAEDVLFS
WQLLRDKGRPNHRQYYSKVATAEAIDERTVRFDFGGTTDRELPLILGLMPVLPKHAVDAATFEQTSMTAPLGSGPYRVTA
VKPGASVTLTRNPDYWGRNLPVNRGLWNFDEIRFDYYREANSQFEAFKRGLYDFRVESEPLRWHEGYNFPAAGDGQLVRE
AIKTGLPAPSEYLVFNTRRPMFSDIRVREALTLLFDFEWINRNYFFGLYSRAGGFFAGSELSAYARAAADGERSLLKPFP
SAVRSDILDGSYRLPVTDGSGRDREALRAALALLSQAGYEFDGTVLRHRSTKAPLAFEILVTTRDQERIALAYARDLKRA
GIEVSVRSVDGVQFDQRRLAFDFDMIQNRWDQSLSPGNEQSFYWGSEAADIPGTRNYMGVKNPAIDAMIAAMLKARERPG
FVDAVRALDRVLMSGFYVIPVYNVREQWIARWNRIERPAATALTGYIPETWWRRPPKPGK
>Mature_619_residues
SKFESKWTRYCRPPRERCRTVVGLALIVGLLAAGYQEVSAADSGYAIAMHGEPALPPDFSRMPYADPDAPKGGRLVQSVP
GSFDSLNPFIVKGVALQQIRGFVVESLMARGHDEPFTLYGLLAERIETDDARTYATFHLNPQARFYDGRSVRAEDVLFSW
QLLRDKGRPNHRQYYSKVATAEAIDERTVRFDFGGTTDRELPLILGLMPVLPKHAVDAATFEQTSMTAPLGSGPYRVTAV
KPGASVTLTRNPDYWGRNLPVNRGLWNFDEIRFDYYREANSQFEAFKRGLYDFRVESEPLRWHEGYNFPAAGDGQLVREA
IKTGLPAPSEYLVFNTRRPMFSDIRVREALTLLFDFEWINRNYFFGLYSRAGGFFAGSELSAYARAAADGERSLLKPFPS
AVRSDILDGSYRLPVTDGSGRDREALRAALALLSQAGYEFDGTVLRHRSTKAPLAFEILVTTRDQERIALAYARDLKRAG
IEVSVRSVDGVQFDQRRLAFDFDMIQNRWDQSLSPGNEQSFYWGSEAADIPGTRNYMGVKNPAIDAMIAAMLKARERPGF
VDAVRALDRVLMSGFYVIPVYNVREQWIARWNRIERPAATALTGYIPETWWRRPPKPGK

Specific function: Unknown

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI87082063, Length=599, Percent_Identity=35.0584307178631, Blast_Score=353, Evalue=1e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 70025; Mature: 69894

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKFESKWTRYCRPPRERCRTVVGLALIVGLLAAGYQEVSAADSGYAIAMHGEPALPPDF
CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEECCCCCCCCCC
SRMPYADPDAPKGGRLVQSVPGSFDSLNPFIVKGVALQQIRGFVVESLMARGHDEPFTLY
CCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
GLLAERIETDDARTYATFHLNPQARFYDGRSVRAEDVLFSWQLLRDKGRPNHRQYYSKVA
HHHHHHHCCCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
TAEAIDERTVRFDFGGTTDRELPLILGLMPVLPKHAVDAATFEQTSMTAPLGSGPYRVTA
HHHHHHCCEEEEECCCCCCCCCHHHHHHHHHCCHHHCCHHHHHHHCCCCCCCCCCEEEEE
VKPGASVTLTRNPDYWGRNLPVNRGLWNFDEIRFDYYREANSQFEAFKRGLYDFRVESEP
ECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCHHEEEECCCC
LRWHEGYNFPAAGDGQLVREAIKTGLPAPSEYLVFNTRRPMFSDIRVREALTLLFDFEWI
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHEEC
NRNYFFGLYSRAGGFFAGSELSAYARAAADGERSLLKPFPSAVRSDILDGSYRLPVTDGS
CCCEEEEEHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHCHHHHHHHHCCCCEEEEECCCC
GRDREALRAALALLSQAGYEFDGTVLRHRSTKAPLAFEILVTTRDQERIALAYARDLKRA
CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHC
GIEVSVRSVDGVQFDQRRLAFDFDMIQNRWDQSLSPGNEQSFYWGSEAADIPGTRNYMGV
CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCC
KNPAIDAMIAAMLKARERPGFVDAVRALDRVLMSGFYVIPVYNVREQWIARWNRIERPAA
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHCCCCHH
TALTGYIPETWWRRPPKPGK
HHHHCCCCHHHCCCCCCCCC
>Mature Secondary Structure 
SKFESKWTRYCRPPRERCRTVVGLALIVGLLAAGYQEVSAADSGYAIAMHGEPALPPDF
CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEEECCCCCCCCCC
SRMPYADPDAPKGGRLVQSVPGSFDSLNPFIVKGVALQQIRGFVVESLMARGHDEPFTLY
CCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
GLLAERIETDDARTYATFHLNPQARFYDGRSVRAEDVLFSWQLLRDKGRPNHRQYYSKVA
HHHHHHHCCCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
TAEAIDERTVRFDFGGTTDRELPLILGLMPVLPKHAVDAATFEQTSMTAPLGSGPYRVTA
HHHHHHCCEEEEECCCCCCCCCHHHHHHHHHCCHHHCCHHHHHHHCCCCCCCCCCEEEEE
VKPGASVTLTRNPDYWGRNLPVNRGLWNFDEIRFDYYREANSQFEAFKRGLYDFRVESEP
ECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHCCHHEEEECCCC
LRWHEGYNFPAAGDGQLVREAIKTGLPAPSEYLVFNTRRPMFSDIRVREALTLLFDFEWI
CCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHEEC
NRNYFFGLYSRAGGFFAGSELSAYARAAADGERSLLKPFPSAVRSDILDGSYRLPVTDGS
CCCEEEEEHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHCHHHHHHHHCCCCEEEEECCCC
GRDREALRAALALLSQAGYEFDGTVLRHRSTKAPLAFEILVTTRDQERIALAYARDLKRA
CCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHC
GIEVSVRSVDGVQFDQRRLAFDFDMIQNRWDQSLSPGNEQSFYWGSEAADIPGTRNYMGV
CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCCC
KNPAIDAMIAAMLKARERPGFVDAVRALDRVLMSGFYVIPVYNVREQWIARWNRIERPAA
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHCCCCHH
TALTGYIPETWWRRPPKPGK
HHHHCCCCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA