| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is 75675602
Identifier: 75675602
GI number: 75675602
Start: 1534194
End: 1535375
Strand: Direct
Name: 75675602
Synonym: Nwi_1410
Alternate gene names: NA
Gene position: 1534194-1535375 (Clockwise)
Preceding gene: 75675601
Following gene: 75675607
Centisome position: 45.1
GC content: 63.62
Gene sequence:
>1182_bases ATGACATCGTCGCCAGCGGAGTTCGATATCGTTGTCTATGGTGCCAGCGGATTCACCGGCCGGCTGGTCGCCGAATACCT AGCCGCCAGATATGGTGGCGGCGACCTGAAGTGGGCCATCGCGGGACGCGATCTCGACAAACTGGCGTCGGTGCGCGAGG CCATCGGCGCGCCCCGTGATCTCCCGCTGGTCGCCGCCGACGCCGGAAACCCGGCGTCGCTCAGGTCCATGGCCGCACGG ACGGCCTCGGTGCTGAGCACGGTTGGACCTTATCAACTCTACGGCTCCGATCTCATCGCCGTCTGCGCGGCGAGTGGCAC GGACTATCTTGATCTCTGCGGCGAGCCGATATGGATGCGGCAGATGATCGACGCGCACGAGGCGGAGGCGCGCAGGAGCG GCGCGCGGATCGTGTTCTCCTGCGGCTACGATTCGCTTCCGTTTGAACTCGGTGTGTTCTTTCTTCAGCAGGCGGCAAAG GACAGGTTCGGATCGGCCCTCTCTCGGGTCAAGGGCCGCGTGCGCAAGATGAAGGGTACGTTTTCCGGCGGCACCGCCGC GAGCATGAAGGCGATCTTTTCCGCGGCCGCCAACGATCCCAGTCTGTTGCCCAAACTACGCGATTCCTTCGTGCTGACGC CGGGGTTTGAAGGGCCGAAACAGCCGCCGGGCAACAAGCCGTTGTTCGATGAAGACCTCGGGATGTGGGTGGCGCCGTTC GTGATGGCGAACATCAACACCCGCAACGTGCACCGGTCGAATTTCCTGCTCGGTTTCCCTTACGGCCAGGATTTCGTCTA TGACGAGATGGTGGTCGCGGGGCCGAAGGAGACGGGTGAGGCGACCGCGAAGGCGATCATCGCCGCCAACAACAAGCTCG GTGCGCAGGGCGGGCCCAAACCAGGCGAGGGACCGTCGAAGGAAGAGCGCGAGAGCGGGCATTACGATCTTCTGTTCCTC GGCATTGGTTCCGACGGGCGGCAGTTGAAGGCAATCGTAACCGGCGATCGCGATCCCGGCTATGGATCGACTTCGAAGAT GATCGCGGAATGCGCAATCTGCCTGCGTCACGACACGCCGGACGTCGCCGGCGGTTTCTGGACGCCGGGCGCTGCGATGA AGGACGCGCTGATCAAGCGGCTCACCAACCACGCCGGGTTGACGTTCACGATCGAGCCGTAA
Upstream 100 bases:
>100_bases GAACCGGTTCGCGTGAAGAAGTTACGTCAGATCAAAGTGATAGAGTCCGTTTCTCCGTGAAACGGTGAAGGACTCTCAGC AGGACATTCTCGGGAAGGTC
Downstream 100 bases:
>100_bases CCAAGCATTGTCCCGGCGCTCGGAAAATTTCCGGAACGGCAGGTCAGATTCTAGCGCGCTGGCTGATCCGGAGCGTGCCG CAGGTCGGCCCTGTACTGGT
Product: saccharopine dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 393; Mature: 392
Protein sequence:
>393_residues MTSSPAEFDIVVYGASGFTGRLVAEYLAARYGGGDLKWAIAGRDLDKLASVREAIGAPRDLPLVAADAGNPASLRSMAAR TASVLSTVGPYQLYGSDLIAVCAASGTDYLDLCGEPIWMRQMIDAHEAEARRSGARIVFSCGYDSLPFELGVFFLQQAAK DRFGSALSRVKGRVRKMKGTFSGGTAASMKAIFSAAANDPSLLPKLRDSFVLTPGFEGPKQPPGNKPLFDEDLGMWVAPF VMANINTRNVHRSNFLLGFPYGQDFVYDEMVVAGPKETGEATAKAIIAANNKLGAQGGPKPGEGPSKEERESGHYDLLFL GIGSDGRQLKAIVTGDRDPGYGSTSKMIAECAICLRHDTPDVAGGFWTPGAAMKDALIKRLTNHAGLTFTIEP
Sequences:
>Translated_393_residues MTSSPAEFDIVVYGASGFTGRLVAEYLAARYGGGDLKWAIAGRDLDKLASVREAIGAPRDLPLVAADAGNPASLRSMAAR TASVLSTVGPYQLYGSDLIAVCAASGTDYLDLCGEPIWMRQMIDAHEAEARRSGARIVFSCGYDSLPFELGVFFLQQAAK DRFGSALSRVKGRVRKMKGTFSGGTAASMKAIFSAAANDPSLLPKLRDSFVLTPGFEGPKQPPGNKPLFDEDLGMWVAPF VMANINTRNVHRSNFLLGFPYGQDFVYDEMVVAGPKETGEATAKAIIAANNKLGAQGGPKPGEGPSKEERESGHYDLLFL GIGSDGRQLKAIVTGDRDPGYGSTSKMIAECAICLRHDTPDVAGGFWTPGAAMKDALIKRLTNHAGLTFTIEP >Mature_392_residues TSSPAEFDIVVYGASGFTGRLVAEYLAARYGGGDLKWAIAGRDLDKLASVREAIGAPRDLPLVAADAGNPASLRSMAART ASVLSTVGPYQLYGSDLIAVCAASGTDYLDLCGEPIWMRQMIDAHEAEARRSGARIVFSCGYDSLPFELGVFFLQQAAKD RFGSALSRVKGRVRKMKGTFSGGTAASMKAIFSAAANDPSLLPKLRDSFVLTPGFEGPKQPPGNKPLFDEDLGMWVAPFV MANINTRNVHRSNFLLGFPYGQDFVYDEMVVAGPKETGEATAKAIIAANNKLGAQGGPKPGEGPSKEERESGHYDLLFLG IGSDGRQLKAIVTGDRDPGYGSTSKMIAECAICLRHDTPDVAGGFWTPGAAMKDALIKRLTNHAGLTFTIEP
Specific function: Unknown
COG id: COG3268
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the saccharopine dehydrogenase family. Enoyl reductase subfamily [H]
Homologues:
Organism=Homo sapiens, GI55770836, Length=443, Percent_Identity=27.765237020316, Blast_Score=124, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17560066, Length=434, Percent_Identity=26.7281105990783, Blast_Score=125, Evalue=4e-29, Organism=Caenorhabditis elegans, GI32567112, Length=203, Percent_Identity=35.4679802955665, Blast_Score=124, Evalue=8e-29, Organism=Caenorhabditis elegans, GI71991033, Length=439, Percent_Identity=24.373576309795, Blast_Score=93, Evalue=3e-19, Organism=Drosophila melanogaster, GI24644140, Length=156, Percent_Identity=38.4615384615385, Blast_Score=117, Evalue=2e-26, Organism=Drosophila melanogaster, GI24644142, Length=156, Percent_Identity=38.4615384615385, Blast_Score=117, Evalue=2e-26, Organism=Drosophila melanogaster, GI21356081, Length=156, Percent_Identity=38.4615384615385, Blast_Score=117, Evalue=2e-26, Organism=Drosophila melanogaster, GI24646278, Length=157, Percent_Identity=38.2165605095541, Blast_Score=114, Evalue=1e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR005097 [H]
Pfam domain/function: PF03435 Saccharop_dh [H]
EC number: NA
Molecular weight: Translated: 41783; Mature: 41652
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSSPAEFDIVVYGASGFTGRLVAEYLAARYGGGDLKWAIAGRDLDKLASVREAIGAPRD CCCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCC LPLVAADAGNPASLRSMAARTASVLSTVGPYQLYGSDLIAVCAASGTDYLDLCGEPIWMR CCEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEHHHCCCCCHHHHCCCCHHHH QMIDAHEAEARRSGARIVFSCGYDSLPFELGVFFLQQAAKDRFGSALSRVKGRVRKMKGT HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FSGGTAASMKAIFSAAANDPSLLPKLRDSFVLTPGFEGPKQPPGNKPLFDEDLGMWVAPF CCCCHHHHHHHHHHHCCCCHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH VMANINTRNVHRSNFLLGFPYGQDFVYDEMVVAGPKETGEATAKAIIAANNKLGAQGGPK HHCCCCCCCEECCCEEEECCCCCCCHHCCEEEECCCCCCHHHHEEEEEECCCCCCCCCCC PGEGPSKEERESGHYDLLFLGIGSDGRQLKAIVTGDRDPGYGSTSKMIAECAICLRHDTP CCCCCCHHHHCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC DVAGGFWTPGAAMKDALIKRLTNHAGLTFTIEP CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECC >Mature Secondary Structure TSSPAEFDIVVYGASGFTGRLVAEYLAARYGGGDLKWAIAGRDLDKLASVREAIGAPRD CCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCC LPLVAADAGNPASLRSMAARTASVLSTVGPYQLYGSDLIAVCAASGTDYLDLCGEPIWMR CCEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCEEEHHHCCCCCHHHHCCCCHHHH QMIDAHEAEARRSGARIVFSCGYDSLPFELGVFFLQQAAKDRFGSALSRVKGRVRKMKGT HHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC FSGGTAASMKAIFSAAANDPSLLPKLRDSFVLTPGFEGPKQPPGNKPLFDEDLGMWVAPF CCCCHHHHHHHHHHHCCCCHHHHHHHHHCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH VMANINTRNVHRSNFLLGFPYGQDFVYDEMVVAGPKETGEATAKAIIAANNKLGAQGGPK HHCCCCCCCEECCCEEEECCCCCCCHHCCEEEECCCCCCHHHHEEEEEECCCCCCCCCCC PGEGPSKEERESGHYDLLFLGIGSDGRQLKAIVTGDRDPGYGSTSKMIAECAICLRHDTP CCCCCCHHHHCCCCEEEEEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCC DVAGGFWTPGAAMKDALIKRLTNHAGLTFTIEP CCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230 [H]