| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is 75675354
Identifier: 75675354
GI number: 75675354
Start: 1272467
End: 1273642
Strand: Direct
Name: 75675354
Synonym: Nwi_1161
Alternate gene names: NA
Gene position: 1272467-1273642 (Clockwise)
Preceding gene: 75675353
Following gene: 75675355
Centisome position: 37.4
GC content: 65.14
Gene sequence:
>1176_bases ATGCGCTTGCGCTTCAAAAACATGTTTGCTCCGCCCGAGACAAAAGCCAGTCGCACGGCCAGGCTGCTCGCCTTCGAGAG CGGCGGCCGCGCGCGCTGGACGCCACGCGACTACGCGGCGCTGGCCCGCGAAGGCTATCTGGCCAATCCCGTCGTACATC GCGCGGTGCGGCTGATCGCGGAGAATGTGGCGTCTTGCAGCTACCTCGTGTTCGAGGGCGCGCAGGAACGCGAGGCGCAT CCGCTATCGTTGCTGCTCACGCGTCCGAATACGCGGCAGGACGGCGGCGCGTTTCTCGAAACGCTGGTGTCGCATCTGTT GCTGGCGGGGAACGCCTATGTCGAAACAGTCGCGCTCGACGGGGCGGTTCGCGAACTTCACGCGCTGCGTCCCGATCGCA TGAAGGTGGTGCCGGGTCCCGAGGGTTGGGCGGAAGCGTATGAGTACAGCGTCGGCGGGCGCAGCGTGCGCTTTGATCAG GCCTCATCCGTCGTGCCACCGATCCTGCACCTGACGTTCTTTCATCCGCTCGACGATCACTACGGTCTTGCGCCGATCGA ATCCGCCGCCGTCGCCATCGACACCCATAACGCCGGATCGAAATGGAATAAGGCGCTGCTCGACAACGCCGCGCGGCCGT CCGGCGCGCTGGTCTATGCCGGGCCGGAGGGCGCGGTGCTCTCGGATTCACAGTTCGACCGGCTCAAGCGCGAGTTGACC GATACCTATCAGGGCGCGGTGAACGCGGGCCGGCCGCTGCTGCTCGAAGGCGGACTCGATTGGAAAGCGATGTCGCTGAC GCCGAAGGACATGGATTTCCTGGAGGCCAAGCACACGGCCGCGCGCGAGATCGCGCTCGCTTTCGGCGTGCCGCCGATGA TGCTCGGTATTCCCGGCGACAACACCTACGCCAATTTCCTGGAAGCCAATCGCTGCTTCTTTCGCCAGACCGTGTTGCCG CTGGCGTCGCGTATCGGCAATTCGTTCGCGCAGTGGCTGTCGCCGCAGTTCGGCGAAAGCATCCGCGTCGTCGTCGACAC CGACAAAATGGACGCGCTCGCCGCCGATCGTACGGCGTTGTGGGAACGGGTCAGCGATGCGGCCTTTCTCACGCTCAACG AAAAGCGCGAGGCGGTCGGCTATGCGCCGATCGAGGGCGGCGACCGCTTGGAGTGA
Upstream 100 bases:
>100_bases ACATCGCTGGCGCTGGTATCGCGCGCTCAGCCGCGGGTGAGGGGATTGTGAACGCTGCTCCTCTCTTCGGGTGCGGGGAG AGACAAATAAAGGATCGCCA
Downstream 100 bases:
>100_bases ACCGTCACTCACCCGCAAGGGGAGAAAAGGCAGAAAGACCGCCATGTCTGATCTTATCCGCATCTTCAGCGATCGCGGCG ATCTCGCTCATCTCGCGCTG
Product: Phage portal protein, HK97
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 391; Mature: 391
Protein sequence:
>391_residues MRLRFKNMFAPPETKASRTARLLAFESGGRARWTPRDYAALAREGYLANPVVHRAVRLIAENVASCSYLVFEGAQEREAH PLSLLLTRPNTRQDGGAFLETLVSHLLLAGNAYVETVALDGAVRELHALRPDRMKVVPGPEGWAEAYEYSVGGRSVRFDQ ASSVVPPILHLTFFHPLDDHYGLAPIESAAVAIDTHNAGSKWNKALLDNAARPSGALVYAGPEGAVLSDSQFDRLKRELT DTYQGAVNAGRPLLLEGGLDWKAMSLTPKDMDFLEAKHTAAREIALAFGVPPMMLGIPGDNTYANFLEANRCFFRQTVLP LASRIGNSFAQWLSPQFGESIRVVVDTDKMDALAADRTALWERVSDAAFLTLNEKREAVGYAPIEGGDRLE
Sequences:
>Translated_391_residues MRLRFKNMFAPPETKASRTARLLAFESGGRARWTPRDYAALAREGYLANPVVHRAVRLIAENVASCSYLVFEGAQEREAH PLSLLLTRPNTRQDGGAFLETLVSHLLLAGNAYVETVALDGAVRELHALRPDRMKVVPGPEGWAEAYEYSVGGRSVRFDQ ASSVVPPILHLTFFHPLDDHYGLAPIESAAVAIDTHNAGSKWNKALLDNAARPSGALVYAGPEGAVLSDSQFDRLKRELT DTYQGAVNAGRPLLLEGGLDWKAMSLTPKDMDFLEAKHTAAREIALAFGVPPMMLGIPGDNTYANFLEANRCFFRQTVLP LASRIGNSFAQWLSPQFGESIRVVVDTDKMDALAADRTALWERVSDAAFLTLNEKREAVGYAPIEGGDRLE >Mature_391_residues MRLRFKNMFAPPETKASRTARLLAFESGGRARWTPRDYAALAREGYLANPVVHRAVRLIAENVASCSYLVFEGAQEREAH PLSLLLTRPNTRQDGGAFLETLVSHLLLAGNAYVETVALDGAVRELHALRPDRMKVVPGPEGWAEAYEYSVGGRSVRFDQ ASSVVPPILHLTFFHPLDDHYGLAPIESAAVAIDTHNAGSKWNKALLDNAARPSGALVYAGPEGAVLSDSQFDRLKRELT DTYQGAVNAGRPLLLEGGLDWKAMSLTPKDMDFLEAKHTAAREIALAFGVPPMMLGIPGDNTYANFLEANRCFFRQTVLP LASRIGNSFAQWLSPQFGESIRVVVDTDKMDALAADRTALWERVSDAAFLTLNEKREAVGYAPIEGGDRLE
Specific function: Unknown
COG id: COG4695
COG function: function code S; Phage-related protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phage portal family. HK97 subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006944 - InterPro: IPR006427 [H]
Pfam domain/function: PF04860 Phage_portal [H]
EC number: NA
Molecular weight: Translated: 42862; Mature: 42862
Theoretical pI: Translated: 6.25; Mature: 6.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLRFKNMFAPPETKASRTARLLAFESGGRARWTPRDYAALAREGYLANPVVHRAVRLIA CCEECCCCCCCCCCCHHHEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH ENVASCSYLVFEGAQEREAHPLSLLLTRPNTRQDGGAFLETLVSHLLLAGNAYVETVALD HHHHHCEEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHH GAVRELHALRPDRMKVVPGPEGWAEAYEYSVGGRSVRFDQASSVVPPILHLTFFHPLDDH HHHHHHHHCCCCCEEECCCCCHHHHHHHCCCCCCEEECCCCCCCCCHHHHHEEECCCCCC YGLAPIESAAVAIDTHNAGSKWNKALLDNAARPSGALVYAGPEGAVLSDSQFDRLKRELT CCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCEEEEECCCCCEECCHHHHHHHHHHH DTYQGAVNAGRPLLLEGGLDWKAMSLTPKDMDFLEAKHTAAREIALAFGVPPMMLGIPGD HHHHHHHCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCC NTYANFLEANRCFFRQTVLPLASRIGNSFAQWLSPQFGESIRVVVDTDKMDALAADRTAL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCEEEEEECCCHHHHHHHHHHH WERVSDAAFLTLNEKREAVGYAPIEGGDRLE HHHHCCCEEEEECCCCHHCCCCCCCCCCCCC >Mature Secondary Structure MRLRFKNMFAPPETKASRTARLLAFESGGRARWTPRDYAALAREGYLANPVVHRAVRLIA CCEECCCCCCCCCCCHHHEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHH ENVASCSYLVFEGAQEREAHPLSLLLTRPNTRQDGGAFLETLVSHLLLAGNAYVETVALD HHHHHCEEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEHH GAVRELHALRPDRMKVVPGPEGWAEAYEYSVGGRSVRFDQASSVVPPILHLTFFHPLDDH HHHHHHHHCCCCCEEECCCCCHHHHHHHCCCCCCEEECCCCCCCCCHHHHHEEECCCCCC YGLAPIESAAVAIDTHNAGSKWNKALLDNAARPSGALVYAGPEGAVLSDSQFDRLKRELT CCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCEEEEECCCCCEECCHHHHHHHHHHH DTYQGAVNAGRPLLLEGGLDWKAMSLTPKDMDFLEAKHTAAREIALAFGVPPMMLGIPGD HHHHHHHCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCC NTYANFLEANRCFFRQTVLPLASRIGNSFAQWLSPQFGESIRVVVDTDKMDALAADRTAL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCEEEEEECCCHHHHHHHHHHH WERVSDAAFLTLNEKREAVGYAPIEGGDRLE HHHHCCCEEEEECCCCHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA