| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is 75674927
Identifier: 75674927
GI number: 75674927
Start: 816327
End: 817706
Strand: Direct
Name: 75674927
Synonym: Nwi_0730
Alternate gene names: NA
Gene position: 816327-817706 (Clockwise)
Preceding gene: 75674926
Following gene: 75674930
Centisome position: 23.99
GC content: 61.16
Gene sequence:
>1380_bases ATGAACGGCCTTGCACGATCCTACGCCCATATCCGCCAGGGGATCGAACTCGGCTTCTTTCGCGGCAGGCCGCTGATCTA TGACGGTACCGAGCCGGTCGCCATCGACGCCCAGGCCGGAAAAGGCAAGCTCACACGGTTTCTCGGCGTCAATCTGGTGT CGCCGCGCACGGCGCATCTGAGCAAGATCATCACCGATCCGAAGGATGCCGAACTTGCATGGGTATCGTGGAAAACGCTT GAGCGGCAAGGCTATCATGTGCGCTTTATCAATGCGGGCAGGCTCTACGGTTATCCTTCCGAAAGCTATAATTTCAACAC GCGGCTTCTGGAAATCGCCTCGATCCCAGCGCTGCGAACTCTGGTGGGGGAGGCCGCGTACGATGCCGCGAGCTATCTCG TGCCAGTCGATCCGAACCCCCATCACAAATGGATCGGCCAGGGCGTGCGCACGGCCTTCGCGCTCTACAACAAGATCACG GCGCTTTATCCTTCCGAACGTTGGCCCTGCACGGTTGGCGGGCTTTGGGATTTCTTCGGGCGCGCGCCGGATGAGATTGC GGACGATCTACTGGTGTGGGCGTCTGATTCCCGCATGGAGGAAGACTGGGGCATGTGCCGCCTGGTCGCGGGCCTGACCG CTTCGACCGATCAATGGAACGCCTATTCCTCGACGGTGGTGGAGCGGCTGCAAGGTTTCCAGCCGGGATCGGCGGCGCGA ACCGTGACCGAACGCAACAGCTTCGATCCCGCCGACATGAAACGGGAGAAGACGGCTCTCTTTATTATTGGGTCGGCCCG CTCGGACACGAGCCGGAATTTCGTGGGTGCGATGGCGGCGGCGGTCATCGAGCGTTTCGCGGATGCGCATGGCACGCTGC GGGCGCTGGTCGTCGGCGAAGAATGGGGGCAACTCTATGTCAGCAACTTCCCTGAAATCCTCACCCTCTACCGGCAGGGC GGGATCAATTTCCTCGGCGTCTTCCAGAACGCTGCAGCCCAGATCGAAAACCGCTACGGGCGCGAACTGGCCCGCATCTG GCGCAAGGCGGTCGCGCATACGCTCTATCGGGGCTTGCCAGATACCGAAACGCTCAAAGACATCGAGCACCGCTCGGGCC GCACCTCGGTCATGGTGCGCGGATTCAACGTCAACCAGAACCAGGTGAACGGCTCCGGCGACAATCTCTCCGAACAATCG AGGCCGCTGCTCCAGGTGGAAGACATCCGCCTTGCGACCGGCGGTGAAAGCGCGCTGCTCGAATCCCGCGATCAGGGGTA TTTCACGGTCGATATGCCGAATTTCTGGGAGCGGCCTGAAATGAGCGGGATGCTGCGCGATGTACGCGAGAAGCCCGATA AATATGCGTGGCTCGCGTAG
Upstream 100 bases:
>100_bases CCGAGGCCCAGCTTCGCGCCATGCTGGACGCAAACCCCAGCGGCCAGCTCGGCCATTCCAGATTGAACGACGAAAGGGCG CTGCGTGAGGCGGGACTGCT
Downstream 100 bases:
>100_bases AATTCTCTTTCTAATGCTTCCCGCACTAAACGTTGGTCGGAACGGGTTGGCCCAGCGGTAGGCGCGGTCGAACGCTTACG GCCACCTCGACCTCCTGTCC
Product: type IV secretory pathway VirD4 components
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 459; Mature: 459
Protein sequence:
>459_residues MNGLARSYAHIRQGIELGFFRGRPLIYDGTEPVAIDAQAGKGKLTRFLGVNLVSPRTAHLSKIITDPKDAELAWVSWKTL ERQGYHVRFINAGRLYGYPSESYNFNTRLLEIASIPALRTLVGEAAYDAASYLVPVDPNPHHKWIGQGVRTAFALYNKIT ALYPSERWPCTVGGLWDFFGRAPDEIADDLLVWASDSRMEEDWGMCRLVAGLTASTDQWNAYSSTVVERLQGFQPGSAAR TVTERNSFDPADMKREKTALFIIGSARSDTSRNFVGAMAAAVIERFADAHGTLRALVVGEEWGQLYVSNFPEILTLYRQG GINFLGVFQNAAAQIENRYGRELARIWRKAVAHTLYRGLPDTETLKDIEHRSGRTSVMVRGFNVNQNQVNGSGDNLSEQS RPLLQVEDIRLATGGESALLESRDQGYFTVDMPNFWERPEMSGMLRDVREKPDKYAWLA
Sequences:
>Translated_459_residues MNGLARSYAHIRQGIELGFFRGRPLIYDGTEPVAIDAQAGKGKLTRFLGVNLVSPRTAHLSKIITDPKDAELAWVSWKTL ERQGYHVRFINAGRLYGYPSESYNFNTRLLEIASIPALRTLVGEAAYDAASYLVPVDPNPHHKWIGQGVRTAFALYNKIT ALYPSERWPCTVGGLWDFFGRAPDEIADDLLVWASDSRMEEDWGMCRLVAGLTASTDQWNAYSSTVVERLQGFQPGSAAR TVTERNSFDPADMKREKTALFIIGSARSDTSRNFVGAMAAAVIERFADAHGTLRALVVGEEWGQLYVSNFPEILTLYRQG GINFLGVFQNAAAQIENRYGRELARIWRKAVAHTLYRGLPDTETLKDIEHRSGRTSVMVRGFNVNQNQVNGSGDNLSEQS RPLLQVEDIRLATGGESALLESRDQGYFTVDMPNFWERPEMSGMLRDVREKPDKYAWLA >Mature_459_residues MNGLARSYAHIRQGIELGFFRGRPLIYDGTEPVAIDAQAGKGKLTRFLGVNLVSPRTAHLSKIITDPKDAELAWVSWKTL ERQGYHVRFINAGRLYGYPSESYNFNTRLLEIASIPALRTLVGEAAYDAASYLVPVDPNPHHKWIGQGVRTAFALYNKIT ALYPSERWPCTVGGLWDFFGRAPDEIADDLLVWASDSRMEEDWGMCRLVAGLTASTDQWNAYSSTVVERLQGFQPGSAAR TVTERNSFDPADMKREKTALFIIGSARSDTSRNFVGAMAAAVIERFADAHGTLRALVVGEEWGQLYVSNFPEILTLYRQG GINFLGVFQNAAAQIENRYGRELARIWRKAVAHTLYRGLPDTETLKDIEHRSGRTSVMVRGFNVNQNQVNGSGDNLSEQS RPLLQVEDIRLATGGESALLESRDQGYFTVDMPNFWERPEMSGMLRDVREKPDKYAWLA
Specific function: Unknown
COG id: COG3505
COG function: function code U; Type IV secretory pathway, VirD4 components
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51426; Mature: 51426
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNGLARSYAHIRQGIELGFFRGRPLIYDGTEPVAIDAQAGKGKLTRFLGVNLVSPRTAHL CCCHHHHHHHHHCCCEEEEECCCCEEECCCCCEEEECCCCCCCEEHHHCCEECCCCHHHH SKIITDPKDAELAWVSWKTLERQGYHVRFINAGRLYGYPSESYNFNTRLLEIASIPALRT HHHHCCCCCCEEEEEEHHHHHCCCCEEEEEECCEEECCCCCCCCCCCEEEEECCCHHHHH LVGEAAYDAASYLVPVDPNPHHKWIGQGVRTAFALYNKITALYPSERWPCTVGGLWDFFG HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHC RAPDEIADDLLVWASDSRMEEDWGMCRLVAGLTASTDQWNAYSSTVVERLQGFQPGSAAR CCHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHH TVTERNSFDPADMKREKTALFIIGSARSDTSRNFVGAMAAAVIERFADAHGTLRALVVGE HHHHCCCCCCHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEC EWGQLYVSNFPEILTLYRQGGINFLGVFQNAAAQIENRYGRELARIWRKAVAHTLYRGLP HHHHHHHHCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DTETLKDIEHRSGRTSVMVRGFNVNQNQVNGSGDNLSEQSRPLLQVEDIRLATGGESALL CHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCHHCCCCEEEEEEEEECCCCHHHH ESRDQGYFTVDMPNFWERPEMSGMLRDVREKPDKYAWLA HCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEECCC >Mature Secondary Structure MNGLARSYAHIRQGIELGFFRGRPLIYDGTEPVAIDAQAGKGKLTRFLGVNLVSPRTAHL CCCHHHHHHHHHCCCEEEEECCCCEEECCCCCEEEECCCCCCCEEHHHCCEECCCCHHHH SKIITDPKDAELAWVSWKTLERQGYHVRFINAGRLYGYPSESYNFNTRLLEIASIPALRT HHHHCCCCCCEEEEEEHHHHHCCCCEEEEEECCEEECCCCCCCCCCCEEEEECCCHHHHH LVGEAAYDAASYLVPVDPNPHHKWIGQGVRTAFALYNKITALYPSERWPCTVGGLWDFFG HHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHHHC RAPDEIADDLLVWASDSRMEEDWGMCRLVAGLTASTDQWNAYSSTVVERLQGFQPGSAAR CCHHHHHCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCHHH TVTERNSFDPADMKREKTALFIIGSARSDTSRNFVGAMAAAVIERFADAHGTLRALVVGE HHHHCCCCCCHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEC EWGQLYVSNFPEILTLYRQGGINFLGVFQNAAAQIENRYGRELARIWRKAVAHTLYRGLP HHHHHHHHCCHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DTETLKDIEHRSGRTSVMVRGFNVNQNQVNGSGDNLSEQSRPLLQVEDIRLATGGESALL CHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCHHCCCCEEEEEEEEECCCCHHHH ESRDQGYFTVDMPNFWERPEMSGMLRDVREKPDKYAWLA HCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA