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The map label for this gene is yagA [H]

Identifier: 75674838

GI number: 75674838

Start: 719819

End: 720799

Strand: Direct

Name: yagA [H]

Synonym: Nwi_0640

Alternate gene names: 75674838

Gene position: 719819-720799 (Clockwise)

Preceding gene: 75674837

Following gene: 75674849

Centisome position: 21.16

GC content: 61.88

Gene sequence:

>981_bases
ATGAGGTATCCTGCATCCGAAAAGGCCGAGATCATTCGCCTGGTCGAGGCCTCGCATCTGCCGGCACGGCGAACCCTGGA
CAAGCTCGGCATCCCGCGCGCCACGTTCTATCGCTGGTACGATCGCTATCTCACCGGTGGGATCGAGGCTCTGGCCGATC
ATCGCTCGCGGCCGGATCGTGTCTGGAACCGGATTCCTGACCCAATCCGGGCCGAGATCGTCGAGCTGGCGCTGCGCGAA
ACGGAGCTGAGCCCGCGCGAGCTGGCGGTGCGCTTCACCGACGAGAAGCGCTACTTTGTCTCGGAGGCGTCGGTATATCG
GCTGCTGAAGGCTCATGATCTCATCACCAGCCCAGCCTATATCGTCATCAAGGCGGCGTCTGAGTTCAAGGACAAGACGA
CAGCGCCCAACCAGCTCTGGCAAACCGACTTCACCTACCTGAAGATCACGGGTTGGGGCTGGTATTATCTCTCGACCGTG
CTCGACGACTTCTCCCGCTTCATCGTCGCCTGGAAGCTCTGCGCCACGATGCGGGCGGATGACGTCACCGCCACGCTCGA
TCTGGCTCTGGCGGCATCGGGGCTCGACCAGATCACGGTCGCGCATCGGCCGAGGCTGTTGAGCGACAACGGCGCCTCAT
ACATCTCGGCCGAACTCGCTACCTGGCTCGACGGCAAGGGCATGAAACACGTTCGCGGCGCGCCGTATCATCCCCAGACG
CAGGGCAAGATCGAGCGCTGGCATCAGACCCTGAAGAACCGCATCCTGCTGGAAAACTACTATCTGCCCGGCGACCTTGA
ACGGCAGGTCGCGGCCTTCGTCGAGCACTACAATCACGGCCGCTATCACGAGAGCATCGATAATCTCACGCCCGCTGACG
TCTACTTCGGCCGCGGGCAGACCATCCTCACCGAACGCGAAAGGATCAAACGCCAGACCATCCACCAAAGACGCTTGCAG
CATCACCTGCAGGCCGCCTAA

Upstream 100 bases:

>100_bases
TGCGCCGTGAGGCGCAGGCCCTGAAGGAGGCCGTGGCCGATCTCACCCTGGAAAACCGCCTGCTGAAAAAAAGCATGCTC
GCGGATGGGGAGGACGACAC

Downstream 100 bases:

>100_bases
CCTCAAACCCAGATGAGCCAGAACCTCCGTTCCCGTGACCCCGGAACAGTCTCAATTCATCTGACGACGGACAGAGCGCC
TTGAAGCGACTTCGGACTGC

Product: helix-turn-helix, Fis-type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 326

Protein sequence:

>326_residues
MRYPASEKAEIIRLVEASHLPARRTLDKLGIPRATFYRWYDRYLTGGIEALADHRSRPDRVWNRIPDPIRAEIVELALRE
TELSPRELAVRFTDEKRYFVSEASVYRLLKAHDLITSPAYIVIKAASEFKDKTTAPNQLWQTDFTYLKITGWGWYYLSTV
LDDFSRFIVAWKLCATMRADDVTATLDLALAASGLDQITVAHRPRLLSDNGASYISAELATWLDGKGMKHVRGAPYHPQT
QGKIERWHQTLKNRILLENYYLPGDLERQVAAFVEHYNHGRYHESIDNLTPADVYFGRGQTILTERERIKRQTIHQRRLQ
HHLQAA

Sequences:

>Translated_326_residues
MRYPASEKAEIIRLVEASHLPARRTLDKLGIPRATFYRWYDRYLTGGIEALADHRSRPDRVWNRIPDPIRAEIVELALRE
TELSPRELAVRFTDEKRYFVSEASVYRLLKAHDLITSPAYIVIKAASEFKDKTTAPNQLWQTDFTYLKITGWGWYYLSTV
LDDFSRFIVAWKLCATMRADDVTATLDLALAASGLDQITVAHRPRLLSDNGASYISAELATWLDGKGMKHVRGAPYHPQT
QGKIERWHQTLKNRILLENYYLPGDLERQVAAFVEHYNHGRYHESIDNLTPADVYFGRGQTILTERERIKRQTIHQRRLQ
HHLQAA
>Mature_326_residues
MRYPASEKAEIIRLVEASHLPARRTLDKLGIPRATFYRWYDRYLTGGIEALADHRSRPDRVWNRIPDPIRAEIVELALRE
TELSPRELAVRFTDEKRYFVSEASVYRLLKAHDLITSPAYIVIKAASEFKDKTTAPNQLWQTDFTYLKITGWGWYYLSTV
LDDFSRFIVAWKLCATMRADDVTATLDLALAASGLDQITVAHRPRLLSDNGASYISAELATWLDGKGMKHVRGAPYHPQT
QGKIERWHQTLKNRILLENYYLPGDLERQVAAFVEHYNHGRYHESIDNLTPADVYFGRGQTILTERERIKRQTIHQRRLQ
HHLQAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=291, Percent_Identity=29.2096219931272, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1788405, Length=230, Percent_Identity=23.0434782608696, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787263, Length=230, Percent_Identity=23.0434782608696, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786753, Length=230, Percent_Identity=23.0434782608696, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786570, Length=230, Percent_Identity=23.0434782608696, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786490, Length=230, Percent_Identity=23.0434782608696, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 37802; Mature: 37802

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYPASEKAEIIRLVEASHLPARRTLDKLGIPRATFYRWYDRYLTGGIEALADHRSRPDR
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
VWNRIPDPIRAEIVELALRETELSPRELAVRFTDEKRYFVSEASVYRLLKAHDLITSPAY
HHHHCCCHHHHHHHHHHHHHCCCCHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCE
IVIKAASEFKDKTTAPNQLWQTDFTYLKITGWGWYYLSTVLDDFSRFIVAWKLCATMRAD
EEEEEHHHHCCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DVTATLDLALAASGLDQITVAHRPRLLSDNGASYISAELATWLDGKGMKHVRGAPYHPQT
CHHHHHHHHHHHCCCHHHHHHHCCEEECCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCC
QGKIERWHQTLKNRILLENYYLPGDLERQVAAFVEHYNHGRYHESIDNLTPADVYFGRGQ
CHHHHHHHHHHHCCEEHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEECCCC
TILTERERIKRQTIHQRRLQHHLQAA
EEHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRYPASEKAEIIRLVEASHLPARRTLDKLGIPRATFYRWYDRYLTGGIEALADHRSRPDR
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH
VWNRIPDPIRAEIVELALRETELSPRELAVRFTDEKRYFVSEASVYRLLKAHDLITSPAY
HHHHCCCHHHHHHHHHHHHHCCCCHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCE
IVIKAASEFKDKTTAPNQLWQTDFTYLKITGWGWYYLSTVLDDFSRFIVAWKLCATMRAD
EEEEEHHHHCCCCCCCHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DVTATLDLALAASGLDQITVAHRPRLLSDNGASYISAELATWLDGKGMKHVRGAPYHPQT
CHHHHHHHHHHHCCCHHHHHHHCCEEECCCCCHHHHHHHHHHHCCCCCHHCCCCCCCCCC
QGKIERWHQTLKNRILLENYYLPGDLERQVAAFVEHYNHGRYHESIDNLTPADVYFGRGQ
CHHHHHHHHHHHCCEEHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCEEECCCC
TILTERERIKRQTIHQRRLQHHLQAA
EEHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]