| Definition | Nitrobacter winogradskyi Nb-255, complete genome. |
|---|---|
| Accession | NC_007406 |
| Length | 3,402,093 |
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The map label for this gene is yejA [C]
Identifier: 75674486
GI number: 75674486
Start: 325344
End: 327239
Strand: Direct
Name: yejA [C]
Synonym: Nwi_0288
Alternate gene names: 75674486
Gene position: 325344-327239 (Clockwise)
Preceding gene: 75674485
Following gene: 75674487
Centisome position: 9.56
GC content: 60.71
Gene sequence:
>1896_bases TTGGCCTTCACACGACGACGACTTCTCCATGGCGGAGCCCTGATCGCAGCCGCCCCCGCAATCAAAGTCCTGACCGGCGC TTCCTCGATCCAGGCTGCTCATGCGCAGGCCGCACCGGCCGGCCTGAAATGGCGGCACGGACTTTCGCTGTTCGGCGAGG TGAAATATCCGGAAGGCTTCAAGCATTTCGATTACGTCAATCCGGACGCGCCCAAAGGCGGTCTGGTGCGGCAGATCGCG ATCGGGACCTTCGACAATTTCAACCCTGTCGTGTCGGGAGTGAAGGGTTCGATCGCATCGGAAGTGCGGCTGGTCTATGA AGCGTTGACGGCTCCCTCCCTGGACGAGGTTTCAACGGAATACGGCGCGCTGGCCGAGTCGGTCGCTTATCCCGATGATT TTTCCTTCGTGGTCTACCGGCTGCGGGCGGAGGCGAAGTGGCACGACGGCAAGCCGGTCACGCCCGACGACGTGATTTTC TCGCTCAACGTGCTGAAGAAGCATCATCCGTTCTATGGAGCCTATTACCGTCACATCACCAAGGTGGAGAAAACCGGCGA GCGGGACGTGACCTTCACCTTCGATGCGCCGGGCAACCGCGAACTGCCGCAGATCGTCGGGCAACTGATGGTGCTTCCGA AGCACTGGTGGGAAGGCACCGATGATGCGGGCAGGAAGCGCGATATTTCCGCGACCACGCTGGAGCCGCCGCTCGGCAGC GGCCCCTACAGGATCAAGCGTTTCGACGCGGCGCGCTCGGTGACTCTCGAGCGGGTCAAGGATTACTGGGGCCGCGATCT CAATTTCAGTATCGGACACAACAATTTCGACGAGCTGCGCTATGAGTATTTCCGCGACGGCACGGTCGCGCTGGAAGCCT TCAAAGGCGATCAGGTCGACTGGCGCACCGAAAACAGCGCCAAGAACTGGGCCACGGCTTACGATTTTCCGGCGGTGAAG GACGGCCGCGTCATTCTGGAGGAATTCCCCAATCGCAATGCCGGCGTGATGCAGGCGTTCGCTCTCAACATCCGCCGCGA CAAGTTCAGGGATCCTCGCGTGCGGCGGGCGCTGAACTTTGCGTTCAATTTCGAGGAAATGAACAAGCAGCTGTTCTACG GTCAGTACAAGCGCATCAACAGCTATTTCGAGGGTACCGAACTGGCGTCGAGCGGCCTGCCCGAGGGCAGGGAGCTTGAA ATCCTTGAAACCGTTCGCGCCGAGGTGCCGGCCGAAGTGTTCACCACGCCTTACAGCAATCCGGTCGGCGGCAACCCCAA GGCGGTTCGCAACAATCTCCGCGAGGGCATGAAGCTCTTCAAGGAGGCGGGATTTGAGGTGCGCAACCACAAGCTGGTGG ACGGAAAAACCGGCGCGCCGTTCGAACTGGAGTTATTGTCGGAAGCTCCAAGCACCGAGCGCATCATGCTGTTCTACAAG CCGTCGCTGGAGCGCATGGGCATTACCGTCAGCGTTCGGACCGTCGATTCGACACAGTACGAGAATCGGATGAGAAGCTG GGACTTCGACGTCGTCGGCAATCTCTGGATCGAGTCGCTGTCACCCGGTAATGAGCAGAGGGAGTTCTGGGGTTCGCAGG CCGCGGACATGCCGGGCTCGCGCAACGTCGTCGGCATCAAGAATCCCGCCGTCGACAAGCTGATCGAGCGCGTGATCTTC GCGAAGGACCGCGCCGACCTCGTGGCAGCCACCAAGGCGCTCGACCGCGTGCTGTTATGGAATCACTACGTGGTGCCGCA ATTCACCTATCCGTTCCATCGCACGGCCCGCTGGGATCGCTTTGGCCGGCCGGAAAAAATGCCGAAGTACGGCCTTTCCG CCTTTCCAACGCTGTGGTGGCATGATGCCGGCAAGGCGGCGGGCAAGCGATCTTGA
Upstream 100 bases:
>100_bases CTCCATTATTCTGATCTGACGCGTGTTCTTCACGCGAACCGGTGCCCGCTTCGCTCGAAAACGCTATAACTCGCCCTGAC AGTTCGCAGGAATATTCGCA
Downstream 100 bases:
>100_bases GGAGCAGCGCAAGGATGAGTCGGCCCAGCCGTCGGCAGGTGTTCGGTCTTGGGATCGGTGCGGCAGGCGCGGCATGGCTG CGGCCGGCCGTCGCCGTGGC
Product: extracellular solute-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 631; Mature: 630
Protein sequence:
>631_residues MAFTRRRLLHGGALIAAAPAIKVLTGASSIQAAHAQAAPAGLKWRHGLSLFGEVKYPEGFKHFDYVNPDAPKGGLVRQIA IGTFDNFNPVVSGVKGSIASEVRLVYEALTAPSLDEVSTEYGALAESVAYPDDFSFVVYRLRAEAKWHDGKPVTPDDVIF SLNVLKKHHPFYGAYYRHITKVEKTGERDVTFTFDAPGNRELPQIVGQLMVLPKHWWEGTDDAGRKRDISATTLEPPLGS GPYRIKRFDAARSVTLERVKDYWGRDLNFSIGHNNFDELRYEYFRDGTVALEAFKGDQVDWRTENSAKNWATAYDFPAVK DGRVILEEFPNRNAGVMQAFALNIRRDKFRDPRVRRALNFAFNFEEMNKQLFYGQYKRINSYFEGTELASSGLPEGRELE ILETVRAEVPAEVFTTPYSNPVGGNPKAVRNNLREGMKLFKEAGFEVRNHKLVDGKTGAPFELELLSEAPSTERIMLFYK PSLERMGITVSVRTVDSTQYENRMRSWDFDVVGNLWIESLSPGNEQREFWGSQAADMPGSRNVVGIKNPAVDKLIERVIF AKDRADLVAATKALDRVLLWNHYVVPQFTYPFHRTARWDRFGRPEKMPKYGLSAFPTLWWHDAGKAAGKRS
Sequences:
>Translated_631_residues MAFTRRRLLHGGALIAAAPAIKVLTGASSIQAAHAQAAPAGLKWRHGLSLFGEVKYPEGFKHFDYVNPDAPKGGLVRQIA IGTFDNFNPVVSGVKGSIASEVRLVYEALTAPSLDEVSTEYGALAESVAYPDDFSFVVYRLRAEAKWHDGKPVTPDDVIF SLNVLKKHHPFYGAYYRHITKVEKTGERDVTFTFDAPGNRELPQIVGQLMVLPKHWWEGTDDAGRKRDISATTLEPPLGS GPYRIKRFDAARSVTLERVKDYWGRDLNFSIGHNNFDELRYEYFRDGTVALEAFKGDQVDWRTENSAKNWATAYDFPAVK DGRVILEEFPNRNAGVMQAFALNIRRDKFRDPRVRRALNFAFNFEEMNKQLFYGQYKRINSYFEGTELASSGLPEGRELE ILETVRAEVPAEVFTTPYSNPVGGNPKAVRNNLREGMKLFKEAGFEVRNHKLVDGKTGAPFELELLSEAPSTERIMLFYK PSLERMGITVSVRTVDSTQYENRMRSWDFDVVGNLWIESLSPGNEQREFWGSQAADMPGSRNVVGIKNPAVDKLIERVIF AKDRADLVAATKALDRVLLWNHYVVPQFTYPFHRTARWDRFGRPEKMPKYGLSAFPTLWWHDAGKAAGKRS >Mature_630_residues AFTRRRLLHGGALIAAAPAIKVLTGASSIQAAHAQAAPAGLKWRHGLSLFGEVKYPEGFKHFDYVNPDAPKGGLVRQIAI GTFDNFNPVVSGVKGSIASEVRLVYEALTAPSLDEVSTEYGALAESVAYPDDFSFVVYRLRAEAKWHDGKPVTPDDVIFS LNVLKKHHPFYGAYYRHITKVEKTGERDVTFTFDAPGNRELPQIVGQLMVLPKHWWEGTDDAGRKRDISATTLEPPLGSG PYRIKRFDAARSVTLERVKDYWGRDLNFSIGHNNFDELRYEYFRDGTVALEAFKGDQVDWRTENSAKNWATAYDFPAVKD GRVILEEFPNRNAGVMQAFALNIRRDKFRDPRVRRALNFAFNFEEMNKQLFYGQYKRINSYFEGTELASSGLPEGRELEI LETVRAEVPAEVFTTPYSNPVGGNPKAVRNNLREGMKLFKEAGFEVRNHKLVDGKTGAPFELELLSEAPSTERIMLFYKP SLERMGITVSVRTVDSTQYENRMRSWDFDVVGNLWIESLSPGNEQREFWGSQAADMPGSRNVVGIKNPAVDKLIERVIFA KDRADLVAATKALDRVLLWNHYVVPQFTYPFHRTARWDRFGRPEKMPKYGLSAFPTLWWHDAGKAAGKRS
Specific function: Possible binding-protein with either a transport or enzymatic activity [H]
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI87082063, Length=589, Percent_Identity=36.8421052631579, Blast_Score=384, Evalue=1e-108, Organism=Escherichia coli, GI1789966, Length=275, Percent_Identity=23.2727272727273, Blast_Score=67, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 71424; Mature: 71292
Theoretical pI: Translated: 9.39; Mature: 9.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFTRRRLLHGGALIAAAPAIKVLTGASSIQAAHAQAAPAGLKWRHGLSLFGEVKYPEGF CCCCHHHHHHCCCCEECCCHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCC KHFDYVNPDAPKGGLVRQIAIGTFDNFNPVVSGVKGSIASEVRLVYEALTAPSLDEVSTE CCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHH YGALAESVAYPDDFSFVVYRLRAEAKWHDGKPVTPDDVIFSLNVLKKHHPFYGAYYRHIT HHHHHHHHCCCCCHHEEEEEEHHCCCCCCCCCCCHHHHEEEEHHHHHCCCHHHHHHHHHH KVEKTGERDVTFTFDAPGNRELPQIVGQLMVLPKHWWEGTDDAGRKRDISATTLEPPLGS HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCC GPYRIKRFDAARSVTLERVKDYWGRDLNFSIGHNNFDELRYEYFRDGTVALEAFKGDQVD CCCEEEEHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCC WRTENSAKNWATAYDFPAVKDGRVILEEFPNRNAGVMQAFALNIRRDKFRDPRVRRALNF CCCCCCCCCCCEECCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH AFNFEEMNKQLFYGQYKRINSYFEGTELASSGLPEGRELEILETVRAEVPAEVFTTPYSN EECHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHCCHHHHCCCCCC PVGGNPKAVRNNLREGMKLFKEAGFEVRNHKLVDGKTGAPFELELLSEAPSTERIMLFYK CCCCCHHHHHHHHHHHHHHHHHCCCEECCCEEECCCCCCCEEEEECCCCCCCCEEEEEEC PSLERMGITVSVRTVDSTQYENRMRSWDFDVVGNLWIESLSPGNEQREFWGSQAADMPGS CCCCCCCEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCC RNVVGIKNPAVDKLIERVIFAKDRADLVAATKALDRVLLWNHYVVPQFTYPFHRTARWDR CCEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCHHCCCHHH FGRPEKMPKYGLSAFPTLWWHDAGKAAGKRS CCCCCCCCCCCCCCCCCCEECCCCCCCCCCC >Mature Secondary Structure AFTRRRLLHGGALIAAAPAIKVLTGASSIQAAHAQAAPAGLKWRHGLSLFGEVKYPEGF CCCHHHHHHCCCCEECCCHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCC KHFDYVNPDAPKGGLVRQIAIGTFDNFNPVVSGVKGSIASEVRLVYEALTAPSLDEVSTE CCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHH YGALAESVAYPDDFSFVVYRLRAEAKWHDGKPVTPDDVIFSLNVLKKHHPFYGAYYRHIT HHHHHHHHCCCCCHHEEEEEEHHCCCCCCCCCCCHHHHEEEEHHHHHCCCHHHHHHHHHH KVEKTGERDVTFTFDAPGNRELPQIVGQLMVLPKHWWEGTDDAGRKRDISATTLEPPLGS HHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCC GPYRIKRFDAARSVTLERVKDYWGRDLNFSIGHNNFDELRYEYFRDGTVALEAFKGDQVD CCCEEEEHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCC WRTENSAKNWATAYDFPAVKDGRVILEEFPNRNAGVMQAFALNIRRDKFRDPRVRRALNF CCCCCCCCCCCEECCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH AFNFEEMNKQLFYGQYKRINSYFEGTELASSGLPEGRELEILETVRAEVPAEVFTTPYSN EECHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCHHHHHHHHHCCHHHHCCCCCC PVGGNPKAVRNNLREGMKLFKEAGFEVRNHKLVDGKTGAPFELELLSEAPSTERIMLFYK CCCCCHHHHHHHHHHHHHHHHHCCCEECCCEEECCCCCCCEEEEECCCCCCCCEEEEEEC PSLERMGITVSVRTVDSTQYENRMRSWDFDVVGNLWIESLSPGNEQREFWGSQAADMPGS CCCCCCCEEEEEEECCCHHHHHHHHCCCHHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCC RNVVGIKNPAVDKLIERVIFAKDRADLVAATKALDRVLLWNHYVVPQFTYPFHRTARWDR CCEEECCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCHHCCCHHH FGRPEKMPKYGLSAFPTLWWHDAGKAAGKRS CCCCCCCCCCCCCCCCCCEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]