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The map label for this gene is xynD [H]

Identifier: 74318769

GI number: 74318769

Start: 2831136

End: 2831987

Strand: Direct

Name: xynD [H]

Synonym: Tbd_2751

Alternate gene names: 74318769

Gene position: 2831136-2831987 (Clockwise)

Preceding gene: 74318768

Following gene: 74318770

Centisome position: 97.3

GC content: 71.6

Gene sequence:

>852_bases
ATGAACCCGCCGCCGCTCCATGCTCCACGTTCCTGGCGCCCGGCGCCGCTTCTGTGGACGACTTTCATGCTGCACGGCGG
CGTCATCGGCTGGCTGCTCGCGGCGCCGCAGCATTGGCCCTGGGCGCTCGGTACGCTCGCGGTCAACCATCTGGCCTTGA
CCCTCGCCGGGTTGCTGCCGCGCAACGGCGCGCTCGGCCTCAACTGGTGGCGCCTGCCGCGCGCCGCATCCGCCGGACAC
GTCGCACTCACGATCGACGACGGTCCCGATCCCGAGGTCACCCCGCAGATCCTCGACCTGCTCGACCGCTACGCGGCGCG
CGCGAGCTTTTTCTGCATCGGCGAAAAGGCGCTGCGCCACCCGGAGCTGTGCCGCGAGATCGTGCGCCGCGGCCACGCGA
TCGAGAACCACAGCCAGCACCACCGTCATCATTTTTCGCTGTTCGGCCCGCGGCGCATGGCGCGTGAAGTCGACGACGGC
CAGGAGACCCTCGCCGCGCTGACCGGCGAGCGCCCGCTGTTCTTCCGTCCGACCGCCGGCCTGCGCAACCCCTTCCTCGA
GCCCATCCTCGCGCGCTTGGGCCTGCGCCTCGCAAGCTGGACGCGCCGCGGCTACGACACGCGCAACCGCGACGCCGACG
ACGTGGCCCGCCGGCTGACCGCGACGCTCGCGGCGGGCGACATACTCCTGCTGCACGACGGCAACGCCGCGCGCACCGCA
GCCGGAGAGCCCGTCATCCTCGCCGTGCTGCCGTGCGTCCTCGACGCGATCGCGGCCGCCGGCCTGCATTCCATCACCCT
GCGCGCCGCGCTCGAACTCACCACTCGCCATGCCGACCGACATTCTGCGTAA

Upstream 100 bases:

>100_bases
TGGCGTTTTCGAGCGTGCCGGTGCTCAACGCGATCGGCACGACGGTCGGCCCCGGGGTGGTCCTCGCCCTGGTCTTTTCC
GCGATCCTCGCGCGCCGCCC

Downstream 100 bases:

>100_bases
ACAGCTGATCGACCACGCCAGCGAACCCTACCGCCGCGCCGGCCGGTTCGCCTACCACTTCGCCCGCGGCAAGCTCGGCG
GCGACCCGATGTTCTTCGCC

Product: transmembrane protein

Products: NA

Alternate protein names: Endo-1,4-beta-xylanase D; XYLD; Xylanase D; Acetylated xylan deacetylase [H]

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MNPPPLHAPRSWRPAPLLWTTFMLHGGVIGWLLAAPQHWPWALGTLAVNHLALTLAGLLPRNGALGLNWWRLPRAASAGH
VALTIDDGPDPEVTPQILDLLDRYAARASFFCIGEKALRHPELCREIVRRGHAIENHSQHHRHHFSLFGPRRMAREVDDG
QETLAALTGERPLFFRPTAGLRNPFLEPILARLGLRLASWTRRGYDTRNRDADDVARRLTATLAAGDILLLHDGNAARTA
AGEPVILAVLPCVLDAIAAAGLHSITLRAALELTTRHADRHSA

Sequences:

>Translated_283_residues
MNPPPLHAPRSWRPAPLLWTTFMLHGGVIGWLLAAPQHWPWALGTLAVNHLALTLAGLLPRNGALGLNWWRLPRAASAGH
VALTIDDGPDPEVTPQILDLLDRYAARASFFCIGEKALRHPELCREIVRRGHAIENHSQHHRHHFSLFGPRRMAREVDDG
QETLAALTGERPLFFRPTAGLRNPFLEPILARLGLRLASWTRRGYDTRNRDADDVARRLTATLAAGDILLLHDGNAARTA
AGEPVILAVLPCVLDAIAAAGLHSITLRAALELTTRHADRHSA
>Mature_283_residues
MNPPPLHAPRSWRPAPLLWTTFMLHGGVIGWLLAAPQHWPWALGTLAVNHLALTLAGLLPRNGALGLNWWRLPRAASAGH
VALTIDDGPDPEVTPQILDLLDRYAARASFFCIGEKALRHPELCREIVRRGHAIENHSQHHRHHFSLFGPRRMAREVDDG
QETLAALTGERPLFFRPTAGLRNPFLEPILARLGLRLASWTRRGYDTRNRDADDVARRLTATLAAGDILLLHDGNAARTA
AGEPVILAVLPCVLDAIAAAGLHSITLRAALELTTRHADRHSA

Specific function: Endo-acting xylanase which displays no detectable activity against polysaccharides other than xylan. Hydrolyzes glucosidic bonds with retention of anomeric configuration [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 polysaccharide deacetylase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008965
- InterPro:   IPR012291
- InterPro:   IPR001919
- InterPro:   IPR008985
- InterPro:   IPR011330
- InterPro:   IPR001137
- InterPro:   IPR013319
- InterPro:   IPR018208
- InterPro:   IPR002509
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00553 CBM_2; PF00457 Glyco_hydro_11; PF01522 Polysacc_deac_1 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 31148; Mature: 31148

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPPPLHAPRSWRPAPLLWTTFMLHGGVIGWLLAAPQHWPWALGTLAVNHLALTLAGLLP
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
RNGALGLNWWRLPRAASAGHVALTIDDGPDPEVTPQILDLLDRYAARASFFCIGEKALRH
CCCCCCCCHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHEEEECHHHHCC
PELCREIVRRGHAIENHSQHHRHHFSLFGPRRMAREVDDGQETLAALTGERPLFFRPTAG
HHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCCCEEECCCCC
LRNPFLEPILARLGLRLASWTRRGYDTRNRDADDVARRLTATLAAGDILLLHDGNAARTA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCC
AGEPVILAVLPCVLDAIAAAGLHSITLRAALELTTRHADRHSA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MNPPPLHAPRSWRPAPLLWTTFMLHGGVIGWLLAAPQHWPWALGTLAVNHLALTLAGLLP
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC
RNGALGLNWWRLPRAASAGHVALTIDDGPDPEVTPQILDLLDRYAARASFFCIGEKALRH
CCCCCCCCHHCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHEEEECHHHHCC
PELCREIVRRGHAIENHSQHHRHHFSLFGPRRMAREVDDGQETLAALTGERPLFFRPTAG
HHHHHHHHHCCCCCCCCHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHCCCCCEEECCCCC
LRNPFLEPILARLGLRLASWTRRGYDTRNRDADDVARRLTATLAAGDILLLHDGNAARTA
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCC
AGEPVILAVLPCVLDAIAAAGLHSITLRAALELTTRHADRHSA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8170399 [H]