| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74318702
Identifier: 74318702
GI number: 74318702
Start: 2760861
End: 2761565
Strand: Direct
Name: 74318702
Synonym: Tbd_2684
Alternate gene names: NA
Gene position: 2760861-2761565 (Clockwise)
Preceding gene: 74318701
Following gene: 74318703
Centisome position: 94.88
GC content: 48.65
Gene sequence:
>705_bases ATGCGACCCGTCGATAAGGGTAAGGATCTGGGGAGTTTCAAGCCTTACAACAAGGCCTGCGCTCCTTTGCAGGACAGGTT AGGAGAGTATTGTTCATATTGTGAGCGCTGGATTGCGGCCGCAATTGAAGTCGAGCACATACTCCCTAAGAAAGCCAATC CGTCTCAGAAGTATAGATGGAGCAATTTTTTGCTCGCCTGCAAGAATTGCAATACAGGCAAGGGATCTGATCAAATCATA GTGACCGACTACCTTTGGCCGGATTTAGACAACACCTTCTTGGCCTTCTGTTATGACGATGAAGGTCGCGCATACCCAAA CCCTAGATTGCCGCCGGCGATCCTAGAAAAAGCAAAAGCAACCTGGACGCTGACGAACCTAAACTGGCACCCAGACACTA CATTCACCGGAATGGTAGCGCCGTCAGAGAAGGATCATCGGCATTCGCACCGAAAGCAGGCATGGATATACGCAAGCGAC AAGCGCAATCAGTTGCTTCAGTACGACACGCCGGACAGAAGAGTATCGGTAGCGAAAGATGCTCTTCAGCGAGGCATGTT TTCCGTATGGATGACGGTCTTTAACACCACATCTGAGTTGGATCGTGAAATACGAAGACTGCTAATAGAGAATTTTGTAG GAACAGCCACTAATTGTTTTGACCGGCTTGGCAATGCACATAGAAGCTCAACGGGTCAAATATGA
Upstream 100 bases:
>100_bases AAGGAAAAGTATGAAGCTTTAAGTCTTCGATATTCCGCCGATCCGTTGGTCGCTGCAGCATTGGATTTTCGATGGGAAAC CTTCGTGTTTAAAAGAAACC
Downstream 100 bases:
>100_bases ATCCCAATGTCCAAGAATGCAGTTTCGAGGAAACAATCGAGGCACATCTATTCGCCAACGGCTACGCATCGCTTCCAGCA TCGGACTACGATGCAGCGCT
Product: HNH nuclease
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 234; Mature: 234
Protein sequence:
>234_residues MRPVDKGKDLGSFKPYNKACAPLQDRLGEYCSYCERWIAAAIEVEHILPKKANPSQKYRWSNFLLACKNCNTGKGSDQII VTDYLWPDLDNTFLAFCYDDEGRAYPNPRLPPAILEKAKATWTLTNLNWHPDTTFTGMVAPSEKDHRHSHRKQAWIYASD KRNQLLQYDTPDRRVSVAKDALQRGMFSVWMTVFNTTSELDREIRRLLIENFVGTATNCFDRLGNAHRSSTGQI
Sequences:
>Translated_234_residues MRPVDKGKDLGSFKPYNKACAPLQDRLGEYCSYCERWIAAAIEVEHILPKKANPSQKYRWSNFLLACKNCNTGKGSDQII VTDYLWPDLDNTFLAFCYDDEGRAYPNPRLPPAILEKAKATWTLTNLNWHPDTTFTGMVAPSEKDHRHSHRKQAWIYASD KRNQLLQYDTPDRRVSVAKDALQRGMFSVWMTVFNTTSELDREIRRLLIENFVGTATNCFDRLGNAHRSSTGQI >Mature_234_residues MRPVDKGKDLGSFKPYNKACAPLQDRLGEYCSYCERWIAAAIEVEHILPKKANPSQKYRWSNFLLACKNCNTGKGSDQII VTDYLWPDLDNTFLAFCYDDEGRAYPNPRLPPAILEKAKATWTLTNLNWHPDTTFTGMVAPSEKDHRHSHRKQAWIYASD KRNQLLQYDTPDRRVSVAKDALQRGMFSVWMTVFNTTSELDREIRRLLIENFVGTATNCFDRLGNAHRSSTGQI
Specific function: Unknown
COG id: COG1403
COG function: function code V; Restriction endonuclease
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26910; Mature: 26910
Theoretical pI: Translated: 8.65; Mature: 8.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPVDKGKDLGSFKPYNKACAPLQDRLGEYCSYCERWIAAAIEVEHILPKKANPSQKYRW CCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEC SNFLLACKNCNTGKGSDQIIVTDYLWPDLDNTFLAFCYDDEGRAYPNPRLPPAILEKAKA CCEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCCC TWTLTNLNWHPDTTFTGMVAPSEKDHRHSHRKQAWIYASDKRNQLLQYDTPDRRVSVAKD EEEEECCCCCCCCCEEEEECCCCHHHHHHHHHCEEEEECCCCCCCCCCCCCCHHHHHHHH ALQRGMFSVWMTVFNTTSELDREIRRLLIENFVGTATNCFDRLGNAHRSSTGQI HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure MRPVDKGKDLGSFKPYNKACAPLQDRLGEYCSYCERWIAAAIEVEHILPKKANPSQKYRW CCCCCCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEC SNFLLACKNCNTGKGSDQIIVTDYLWPDLDNTFLAFCYDDEGRAYPNPRLPPAILEKAKA CCEEEEECCCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCCC TWTLTNLNWHPDTTFTGMVAPSEKDHRHSHRKQAWIYASDKRNQLLQYDTPDRRVSVAKD EEEEECCCCCCCCCEEEEECCCCHHHHHHHHHCEEEEECCCCCCCCCCCCCCHHHHHHHH ALQRGMFSVWMTVFNTTSELDREIRRLLIENFVGTATNCFDRLGNAHRSSTGQI HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA