| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74318556
Identifier: 74318556
GI number: 74318556
Start: 2608540
End: 2609433
Strand: Direct
Name: 74318556
Synonym: Tbd_2538
Alternate gene names: NA
Gene position: 2608540-2609433 (Clockwise)
Preceding gene: 74318555
Following gene: 74318557
Centisome position: 89.65
GC content: 70.69
Gene sequence:
>894_bases ATGAAACGACTGCTTCTTGCGCTCGCCCTGTGGCTGCCCGTCGCCGCCTACGCGAGCCTCAACGTCTTCGCCTGCGAGCC CGAGTGGGCCGCGCTGGCGAGGGAAATCGGCGGCGACGACGTCAAGGTCTACGCCGCGACGACCGCGACCCAGGACCCGC ACCGAATCGAGGCGCGGCCGAGCCTGATCGCGCAAATGCGGCGCGCCGACCTCGCGGTGTGTACGGGAGCCGAACTCGAA ATCGGCTGGCTGCCGGTATTGCTGCGCGAGTCCGGAAACGCCCGCGTCCAGCCCGGGCGGCCCGGCTACTTCGAGGCCGC ACGTTTGGTTCCCCTGCTCGACAAGCCGCGCCGGCTCGATCGCGCCGAGGGCGACGTGCATGCGCTCGGCAATCCGCACA TCCACACCGACCCGCGCAACATCCTGCGCGTCGCCGAGTCGCTGACGGCGCGCATGGCCGAGCTCGATCCCACCAAGGCC GCGGCTTACCGCGCGCGAGGGCAGGCCTTCGGCACGCGCTGGCAGGCCGCGATCGCGCGCTGGGAAGCGCGCGCCGCCAC GCTAAAGAGTGTCCCGGTCGCGGTTCAGCACAAGTCGTTCAGCTACCTGCTCGCCTGGCTCGGACTGCGCGAGGTCGCCA TCCTGGAGCCCAAGCCGGGGGTCGACCCGTCGGTCGCCCATCTCGCGCGCGTGGCGGCGCAGCTCGAAACGACCCCGGCG CGGATGGTGCTGCGAACCGCCTATCAGAGTCCGCGTCCGGCGGCCTGGCTCGCCGACCGCGCAGGCATTCCGGCGCTCGC CTTGCCGTATACCGTGGGCGGCAACGCGCAGGCGAAGGATTTGTTCGCGCTCTTCGACGACACGCTGGACCAGCTGCTGA AGGCGGCACGATGA
Upstream 100 bases:
>100_bases AAGGACCAGTCGATGGCCGAGGTAAGCGAGAACCAGTGGTTCGTGCAATACATCCACAGTCTGGGCGCGCACGGCGCTCA CAAATTCTGAGGAGACCGCC
Downstream 100 bases:
>100_bases ACGCGGCGTTCGCCCCCGACCTGCTGGCCTGGCCCTTCGCGGTCGGGCTGCTGGTGCTCGCGACCCACGTCCCGCTCGGG CGGCGGGTGCTCGCGCGCGG
Product: zinc/manganese transport system substrate-binding protein
Products: NA
Alternate protein names: ABC Transporter Periplasmic Adhesin; BC-Type Metal Ion Transport System Periplasmic Component.
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MKRLLLALALWLPVAAYASLNVFACEPEWAALAREIGGDDVKVYAATTATQDPHRIEARPSLIAQMRRADLAVCTGAELE IGWLPVLLRESGNARVQPGRPGYFEAARLVPLLDKPRRLDRAEGDVHALGNPHIHTDPRNILRVAESLTARMAELDPTKA AAYRARGQAFGTRWQAAIARWEARAATLKSVPVAVQHKSFSYLLAWLGLREVAILEPKPGVDPSVAHLARVAAQLETTPA RMVLRTAYQSPRPAAWLADRAGIPALALPYTVGGNAQAKDLFALFDDTLDQLLKAAR
Sequences:
>Translated_297_residues MKRLLLALALWLPVAAYASLNVFACEPEWAALAREIGGDDVKVYAATTATQDPHRIEARPSLIAQMRRADLAVCTGAELE IGWLPVLLRESGNARVQPGRPGYFEAARLVPLLDKPRRLDRAEGDVHALGNPHIHTDPRNILRVAESLTARMAELDPTKA AAYRARGQAFGTRWQAAIARWEARAATLKSVPVAVQHKSFSYLLAWLGLREVAILEPKPGVDPSVAHLARVAAQLETTPA RMVLRTAYQSPRPAAWLADRAGIPALALPYTVGGNAQAKDLFALFDDTLDQLLKAAR >Mature_297_residues MKRLLLALALWLPVAAYASLNVFACEPEWAALAREIGGDDVKVYAATTATQDPHRIEARPSLIAQMRRADLAVCTGAELE IGWLPVLLRESGNARVQPGRPGYFEAARLVPLLDKPRRLDRAEGDVHALGNPHIHTDPRNILRVAESLTARMAELDPTKA AAYRARGQAFGTRWQAAIARWEARAATLKSVPVAVQHKSFSYLLAWLGLREVAILEPKPGVDPSVAHLARVAAQLETTPA RMVLRTAYQSPRPAAWLADRAGIPALALPYTVGGNAQAKDLFALFDDTLDQLLKAAR
Specific function: Unknown
COG id: COG0803
COG function: function code P; ABC-type metal ion transport system, periplasmic component/surface adhesin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32390; Mature: 32390
Theoretical pI: Translated: 9.95; Mature: 9.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRLLLALALWLPVAAYASLNVFACEPEWAALAREIGGDDVKVYAATTATQDPHRIEARP CHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCH SLIAQMRRADLAVCTGAELEIGWLPVLLRESGNARVQPGRPGYFEAARLVPLLDKPRRLD HHHHHHHHHCEEEECCCCEEECCEEEEEECCCCCEECCCCCCHHHHHHHCHHCCCCCHHH RAEGDVHALGNPHIHTDPRNILRVAESLTARMAELDPTKAAAYRARGQAFGTRWQAAIAR CCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH WEARAATLKSVPVAVQHKSFSYLLAWLGLREVAILEPKPGVDPSVAHLARVAAQLETTPA HHHHHHHHHHCCEEEECCHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHCCHH RMVLRTAYQSPRPAAWLADRAGIPALALPYTVGGNAQAKDLFALFDDTLDQLLKAAR HHHHHHHHCCCCCCHHHHHHCCCCEEEECEEECCCCCHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKRLLLALALWLPVAAYASLNVFACEPEWAALAREIGGDDVKVYAATTATQDPHRIEARP CHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCH SLIAQMRRADLAVCTGAELEIGWLPVLLRESGNARVQPGRPGYFEAARLVPLLDKPRRLD HHHHHHHHHCEEEECCCCEEECCEEEEEECCCCCEECCCCCCHHHHHHHCHHCCCCCHHH RAEGDVHALGNPHIHTDPRNILRVAESLTARMAELDPTKAAAYRARGQAFGTRWQAAIAR CCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH WEARAATLKSVPVAVQHKSFSYLLAWLGLREVAILEPKPGVDPSVAHLARVAAQLETTPA HHHHHHHHHHCCEEEECCHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHHHHCCHH RMVLRTAYQSPRPAAWLADRAGIPALALPYTVGGNAQAKDLFALFDDTLDQLLKAAR HHHHHHHHCCCCCCHHHHHHCCCCEEEECEEECCCCCHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA