| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is purH [H]
Identifier: 74318476
GI number: 74318476
Start: 2528428
End: 2529987
Strand: Direct
Name: purH [H]
Synonym: Tbd_2458
Alternate gene names: 74318476
Gene position: 2528428-2529987 (Clockwise)
Preceding gene: 74318475
Following gene: 74318477
Centisome position: 86.89
GC content: 67.05
Gene sequence:
>1560_bases ATGACGATCAAACGTGCCCTGCTTTCCGTGTCGGATAAAACCGGCCTCGTCGATTTCGCCCGCGCGCTCGCCACTGCCGG CGTCGAACTGCTGTCCACGGGCGGCACCGCCAAGACCCTGCGCGACGCCGGCCTCGCGGTCATCGACGTCAGCGAATACA CCGGCTTTCCCGAAATGCTCGACGGGCGCGTCAAGACCCTGCACCCGAAGGTGCACGGCGGCATCCTCGCGCGCCGCGAT CTCGACGACCATGTCGCGACGATGGACACGCACAGCCTGGGCTACATCGACCTCGTGTGCGTGAATCTCTATCCCTTCGT CGCCACGGTTTCCAAGCCGCATACCCTCGACGACGCGATCGAGAACATCGACATCGGCGGGCCGGCGATGGTGCGTTCGT CGGCGAAAAACTACCGCTTCGTCGCGATCGTCACCGACCCGGCCGACTACCCGGCGCTCGTCGTCGAAATGCAGGCCAAC GCCGGCGCGCTGACCGACGCGACCCGCTTCACGCTCGCCAAGAAGGCCTTCAGCCACACCGCGGAATACGACGGCGCGAT CAGCAACTACCTGACGTCGCTCAACGACGCCAACGAGCGCGAGACCTTCGGCGAGAAACTGAACCTGCAGTTCACGCGCG CGCAGATCTGCCGCTACGGCGAGAACCCGCATCAGGCCGGCGCCTTCTACGTGGAATCCGACGCGCCGGCCGGCACGATC GCCACCGCGCGCCAGATCCAGGGCAAGGAGCTTTCCTACAACAACATTGCCGACACCGACGCCGCGCTCGAGTGCATCAA GCAGTTCGACGCCGCGCCCGCCTGCGTCATCGTCAAGCACGCGAACCCGTGCGGCGTCGCGTACGGCACGAGCCTCATGG AAGCCTACGACCGCGCCTACGCGACCGACCCCGAATCCGCGTTCGGCGGCATCATCGCCTTCAACGGCCGGCTCGACGGC GCGACCGCCGCGGCGATCGTCGAACGCCAGTTCGTCGAGGTCATCATCGCCCCCGCAGTGAGCCCGGAAGCCTCGGCCGC GGTCGCCGCCAAGAAGAACGTGCGCCTGCTCGAATGCGGCCAGTGGACAGGCAGCGTCGCCCAGCTCGACATGAAGCGCG TCGCCGGCGGCCTCCTGGTGCAGGATGCCGACGTTTTGCTCAACGCCGAGCTCAAGGTCGTCACCCAACGCGCCCCAACC GACAAGGAAATGGACGACCTCCTGTTCGCCTGGCGCGTCGCCAAGTTCGTCAAGTCGAACGCGATCGTCTACGCGAAGGA CCGCATGACCATCGGCGTCGGCGCCGGCCAGATGAGCCGCGTCAACTCGGCGCGCATCGCCGCGATCAAGGCCGAGCACG CCGGGCTCGTCGTGCCAGGCTCGGTCATGGCGTCGGACGCCTTCTTCCCTTTCCGCGACGGCATCGACCAGGCCGCGGCG GCGGGCATCAAGGCCGTAATCCAGCCCGGCGGCTCGATGCGCGACGACGAGGTCATCGCCGCGGCGAACGAGCACGGTCT CGCGATGGTGTTCACCGGCACGCGGCATTTCCGTCACTAG
Upstream 100 bases:
>100_bases GCCGAGGGCAACCAGACCCGCGCCGCCGAAATGCTCGGCATCAACCGCAATACGCTGCGCAAGAAAATGCGCGAACACGG CCTCTCTGACTGACCCTTCC
Downstream 100 bases:
>100_bases GAATCAGAGGTCAGGTTTCAGGGATCAGGGAATGCGCCCGAGGCCGCCATTTTCCGAATCCACTCCACCTGACCTCTCCT TGACCCCTGAATCCCGACCC
Product: IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase
Products: NA
Alternate protein names: Phosphoribosylaminoimidazolecarboxamide formyltransferase; AICAR transformylase; IMP cyclohydrolase; ATIC; IMP synthase; Inosinicase [H]
Number of amino acids: Translated: 519; Mature: 518
Protein sequence:
>519_residues MTIKRALLSVSDKTGLVDFARALATAGVELLSTGGTAKTLRDAGLAVIDVSEYTGFPEMLDGRVKTLHPKVHGGILARRD LDDHVATMDTHSLGYIDLVCVNLYPFVATVSKPHTLDDAIENIDIGGPAMVRSSAKNYRFVAIVTDPADYPALVVEMQAN AGALTDATRFTLAKKAFSHTAEYDGAISNYLTSLNDANERETFGEKLNLQFTRAQICRYGENPHQAGAFYVESDAPAGTI ATARQIQGKELSYNNIADTDAALECIKQFDAAPACVIVKHANPCGVAYGTSLMEAYDRAYATDPESAFGGIIAFNGRLDG ATAAAIVERQFVEVIIAPAVSPEASAAVAAKKNVRLLECGQWTGSVAQLDMKRVAGGLLVQDADVLLNAELKVVTQRAPT DKEMDDLLFAWRVAKFVKSNAIVYAKDRMTIGVGAGQMSRVNSARIAAIKAEHAGLVVPGSVMASDAFFPFRDGIDQAAA AGIKAVIQPGGSMRDDEVIAAANEHGLAMVFTGTRHFRH
Sequences:
>Translated_519_residues MTIKRALLSVSDKTGLVDFARALATAGVELLSTGGTAKTLRDAGLAVIDVSEYTGFPEMLDGRVKTLHPKVHGGILARRD LDDHVATMDTHSLGYIDLVCVNLYPFVATVSKPHTLDDAIENIDIGGPAMVRSSAKNYRFVAIVTDPADYPALVVEMQAN AGALTDATRFTLAKKAFSHTAEYDGAISNYLTSLNDANERETFGEKLNLQFTRAQICRYGENPHQAGAFYVESDAPAGTI ATARQIQGKELSYNNIADTDAALECIKQFDAAPACVIVKHANPCGVAYGTSLMEAYDRAYATDPESAFGGIIAFNGRLDG ATAAAIVERQFVEVIIAPAVSPEASAAVAAKKNVRLLECGQWTGSVAQLDMKRVAGGLLVQDADVLLNAELKVVTQRAPT DKEMDDLLFAWRVAKFVKSNAIVYAKDRMTIGVGAGQMSRVNSARIAAIKAEHAGLVVPGSVMASDAFFPFRDGIDQAAA AGIKAVIQPGGSMRDDEVIAAANEHGLAMVFTGTRHFRH >Mature_518_residues TIKRALLSVSDKTGLVDFARALATAGVELLSTGGTAKTLRDAGLAVIDVSEYTGFPEMLDGRVKTLHPKVHGGILARRDL DDHVATMDTHSLGYIDLVCVNLYPFVATVSKPHTLDDAIENIDIGGPAMVRSSAKNYRFVAIVTDPADYPALVVEMQANA GALTDATRFTLAKKAFSHTAEYDGAISNYLTSLNDANERETFGEKLNLQFTRAQICRYGENPHQAGAFYVESDAPAGTIA TARQIQGKELSYNNIADTDAALECIKQFDAAPACVIVKHANPCGVAYGTSLMEAYDRAYATDPESAFGGIIAFNGRLDGA TAAAIVERQFVEVIIAPAVSPEASAAVAAKKNVRLLECGQWTGSVAQLDMKRVAGGLLVQDADVLLNAELKVVTQRAPTD KEMDDLLFAWRVAKFVKSNAIVYAKDRMTIGVGAGQMSRVNSARIAAIKAEHAGLVVPGSVMASDAFFPFRDGIDQAAAA GIKAVIQPGGSMRDDEVIAAANEHGLAMVFTGTRHFRH
Specific function: De novo purine biosynthesis; ninth step. De novo purine biosynthesis; tenth step. [C]
COG id: COG0138
COG function: function code F; AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the purH family [H]
Homologues:
Organism=Homo sapiens, GI20127454, Length=511, Percent_Identity=37.7690802348337, Blast_Score=267, Evalue=2e-71, Organism=Escherichia coli, GI1790439, Length=526, Percent_Identity=65.2091254752852, Blast_Score=671, Evalue=0.0, Organism=Caenorhabditis elegans, GI71985564, Length=519, Percent_Identity=34.4894026974952, Blast_Score=251, Evalue=8e-67, Organism=Caenorhabditis elegans, GI71985574, Length=349, Percent_Identity=27.5071633237822, Blast_Score=91, Evalue=1e-18, Organism=Caenorhabditis elegans, GI71985556, Length=60, Percent_Identity=51.6666666666667, Blast_Score=74, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6323768, Length=481, Percent_Identity=37.006237006237, Blast_Score=256, Evalue=5e-69, Organism=Saccharomyces cerevisiae, GI6323056, Length=486, Percent_Identity=36.4197530864198, Blast_Score=247, Evalue=4e-66, Organism=Drosophila melanogaster, GI24649832, Length=514, Percent_Identity=37.9377431906615, Blast_Score=265, Evalue=8e-71,
Paralogues:
None
Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 640 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002695 - InterPro: IPR013982 - InterPro: IPR016193 - InterPro: IPR011607 [H]
Pfam domain/function: PF01808 AICARFT_IMPCHas; PF02142 MGS [H]
EC number: =2.1.2.3; =3.5.4.10 [H]
Molecular weight: Translated: 55285; Mature: 55154
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIKRALLSVSDKTGLVDFARALATAGVELLSTGGTAKTLRDAGLAVIDVSEYTGFPEML CCHHHHHHHCCCCCCHHHHHHHHHHCCHHEEECCCCHHHHHHCCEEEEEEHHHCCCHHHH DGRVKTLHPKVHGGILARRDLDDHVATMDTHSLGYIDLVCVNLYPFVATVSKPHTLDDAI CCCCEEECCHHHCCEEEECCCCHHHHCCCCCCCCCCEEHHHHHHHHHHCCCCCCCHHHHH ENIDIGGPAMVRSSAKNYRFVAIVTDPADYPALVVEMQANAGALTDATRFTLAKKAFSHT HHCCCCCHHHHHCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH AEYDGAISNYLTSLNDANERETFGEKLNLQFTRAQICRYGENPHQAGAFYVESDAPAGTI HHCCHHHHHHHHHCCCCCHHHHHHHHCCEEEHHHHHHHCCCCCCCCCCEEEECCCCCCCH ATARQIQGKELSYNNIADTDAALECIKQFDAAPACVIVKHANPCGVAYGTSLMEAYDRAY HHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC ATDPESAFGGIIAFNGRLDGATAAAIVERQFVEVIIAPAVSPEASAAVAAKKNVRLLECG CCCCCHHCCCEEEECCCCCCHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHCCCEEEECC QWTGSVAQLDMKRVAGGLLVQDADVLLNAELKVVTQRAPTDKEMDDLLFAWRVAKFVKSN CCCCHHHHHHHHHHHCCEEEECCCEEEECEEEEEEECCCCCCHHHHHHHHHHHHHHHHCC AIVYAKDRMTIGVGAGQMSRVNSARIAAIKAEHAGLVVPGSVMASDAFFPFRDGIDQAAA CEEEEECCEEEEECCCCHHHCCCCEEEEEEECCCCEEECCHHHHCCCCCCHHCCHHHHHH AGIKAVIQPGGSMRDDEVIAAANEHGLAMVFTGTRHFRH HCHHEEECCCCCCCCCCEEEEECCCCEEEEEECCHHCCC >Mature Secondary Structure TIKRALLSVSDKTGLVDFARALATAGVELLSTGGTAKTLRDAGLAVIDVSEYTGFPEML CHHHHHHHCCCCCCHHHHHHHHHHCCHHEEECCCCHHHHHHCCEEEEEEHHHCCCHHHH DGRVKTLHPKVHGGILARRDLDDHVATMDTHSLGYIDLVCVNLYPFVATVSKPHTLDDAI CCCCEEECCHHHCCEEEECCCCHHHHCCCCCCCCCCEEHHHHHHHHHHCCCCCCCHHHHH ENIDIGGPAMVRSSAKNYRFVAIVTDPADYPALVVEMQANAGALTDATRFTLAKKAFSHT HHCCCCCHHHHHCCCCCEEEEEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHH AEYDGAISNYLTSLNDANERETFGEKLNLQFTRAQICRYGENPHQAGAFYVESDAPAGTI HHCCHHHHHHHHHCCCCCHHHHHHHHCCEEEHHHHHHHCCCCCCCCCCEEEECCCCCCCH ATARQIQGKELSYNNIADTDAALECIKQFDAAPACVIVKHANPCGVAYGTSLMEAYDRAY HHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC ATDPESAFGGIIAFNGRLDGATAAAIVERQFVEVIIAPAVSPEASAAVAAKKNVRLLECG CCCCCHHCCCEEEECCCCCCHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHCCCEEEECC QWTGSVAQLDMKRVAGGLLVQDADVLLNAELKVVTQRAPTDKEMDDLLFAWRVAKFVKSN CCCCHHHHHHHHHHHCCEEEECCCEEEECEEEEEEECCCCCCHHHHHHHHHHHHHHHHCC AIVYAKDRMTIGVGAGQMSRVNSARIAAIKAEHAGLVVPGSVMASDAFFPFRDGIDQAAA CEEEEECCEEEEECCCCHHHCCCCEEEEEEECCCCEEECCHHHHCCCCCCHHCCHHHHHH AGIKAVIQPGGSMRDDEVIAAANEHGLAMVFTGTRHFRH HCHHEEECCCCCCCCCCEEEEECCCCEEEEEECCHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA