| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is yiaL [H]
Identifier: 74318447
GI number: 74318447
Start: 2499471
End: 2499929
Strand: Reverse
Name: yiaL [H]
Synonym: Tbd_2429
Alternate gene names: 74318447
Gene position: 2499929-2499471 (Counterclockwise)
Preceding gene: 74318448
Following gene: 74318446
Centisome position: 85.91
GC content: 67.76
Gene sequence:
>459_bases GTGATCCTCGCCCCGCTTGCGCACGCCGAGCGCTACCTGGCCCTGCACCCGCTGTTTTCCGAGGCCTTCGCCTTCCTGCG CCGGTTCGATCTGGATACGCTCGCGCCCGGCATCCATGCGGTCCGCGGCGACAGCGTCTTCGCCATCGTCGAGGCGGCGG AAGGCCGGACGCGCGAGGCTGCCAGACTCGAAAGTCATCGTCGCTATATCGATATCCAGCTCATACTCGAGGGGGTCGAC GAGATGGGCTGGCGGCCGCTGTCGCAGTGCCGGCAGCCGCTCGGCGACCACGATGAAGACCGTGACATCCGTTTCTTCGC CGATGCGCCGGCCACCTGGGTCGCGGCGCACGCCGGGATGTTCTGCGTGTTCTTTCCGGAAGACGCGCACGCGCCGCTCG TGAGTTCGGGGCCGCTGCGCAAGGTCGTGATGAAGGTGGCGGTCGACGCGTCACCCTGA
Upstream 100 bases:
>100_bases ACTACCAGGAATACGAGGCCGACAAGAAGAAACGGCTGGGTGAGGAGGGCGCGAAGCCCAAGCGCATCCGCTACAAGCCG ATCAGCCGCTGAGCACGCCC
Downstream 100 bases:
>100_bases CCGAGGGCGCGGGTCTCAAGTGCAGGGCAAGGCTGCCGTTATCGTTCTACCTTGAACCTTAGCCTGCCATGCGCCTCGTC CTGCTGGTCCTGTTGAGTCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 152; Mature: 152
Protein sequence:
>152_residues MILAPLAHAERYLALHPLFSEAFAFLRRFDLDTLAPGIHAVRGDSVFAIVEAAEGRTREAARLESHRRYIDIQLILEGVD EMGWRPLSQCRQPLGDHDEDRDIRFFADAPATWVAAHAGMFCVFFPEDAHAPLVSSGPLRKVVMKVAVDASP
Sequences:
>Translated_152_residues MILAPLAHAERYLALHPLFSEAFAFLRRFDLDTLAPGIHAVRGDSVFAIVEAAEGRTREAARLESHRRYIDIQLILEGVD EMGWRPLSQCRQPLGDHDEDRDIRFFADAPATWVAAHAGMFCVFFPEDAHAPLVSSGPLRKVVMKVAVDASP >Mature_152_residues MILAPLAHAERYLALHPLFSEAFAFLRRFDLDTLAPGIHAVRGDSVFAIVEAAEGRTREAARLESHRRYIDIQLILEGVD EMGWRPLSQCRQPLGDHDEDRDIRFFADAPATWVAAHAGMFCVFFPEDAHAPLVSSGPLRKVVMKVAVDASP
Specific function: Unknown
COG id: COG2731
COG function: function code G; Beta-galactosidase, beta subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the yhcH/yiaL/yjgK family [H]
Homologues:
Organism=Escherichia coli, GI1790001, Length=136, Percent_Identity=30.1470588235294, Blast_Score=71, Evalue=4e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004375 [H]
Pfam domain/function: PF04074 DUF386 [H]
EC number: NA
Molecular weight: Translated: 16935; Mature: 16935
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MILAPLAHAERYLALHPLFSEAFAFLRRFDLDTLAPGIHAVRGDSVFAIVEAAEGRTREA CEECCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCEEECCCCEEEEEECCCCCCHHH ARLESHRRYIDIQLILEGVDEMGWRPLSQCRQPLGDHDEDRDIRFFADAPATWVAAHAGM HHHHHHHHEEHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEECCCHHHHHHCCCE FCVFFPEDAHAPLVSSGPLRKVVMKVAVDASP EEEECCCCCCCCCCCCCHHHHHHHHHHCCCCC >Mature Secondary Structure MILAPLAHAERYLALHPLFSEAFAFLRRFDLDTLAPGIHAVRGDSVFAIVEAAEGRTREA CEECCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCEEECCCCEEEEEECCCCCCHHH ARLESHRRYIDIQLILEGVDEMGWRPLSQCRQPLGDHDEDRDIRFFADAPATWVAAHAGM HHHHHHHHEEHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEECCCHHHHHHCCCE FCVFFPEDAHAPLVSSGPLRKVVMKVAVDASP EEEECCCCCCCCCCCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8041620; 9278503 [H]