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The map label for this gene is ycbY [C]

Identifier: 74318442

GI number: 74318442

Start: 2493960

End: 2495156

Strand: Reverse

Name: ycbY [C]

Synonym: Tbd_2424

Alternate gene names: 74318442

Gene position: 2495156-2493960 (Counterclockwise)

Preceding gene: 74318443

Following gene: 74318441

Centisome position: 85.75

GC content: 67.0

Gene sequence:

>1197_bases
GTGGCGCCCCGCTCGCGGGAGCAACTCCCGCCCGCGAGCCACTTCGCGACCTGCCCGCGCGGGCTCGAGGAGCTGCTCGT
CGCGGAGTTGAACGCCGCCGGCGCCCAGGTCGTGCGCCAGCTGCCGGCCGGCGTGCTGTTCATCGCCGACGCCGCCGCCG
AGATGCGCGCCAACCTCACCTCGCGGACCGCGACGCGCATCCTGCGCAAGGTCGGGTACACGCGTTACAAGAAGGAAGAG
CACATCTACCGCGCCGCCCTCGATCTGCCGTGGCCCGAGTGGTTCGACGTCACGAAGACCATCGCGGTGAAAGTCGGCGC
GCAGAACGCGCCGCTGAAAAGCCTCAACTTCATCACGCTCAAGATCAAGGACGCGATCTGCGACCGCTTCCGGGAAGAAA
CACGCGAGCGACCGAGCGTCGACACCGAGTCGCCCGACGTGCCCGTGTATGCGTTCTTCACGCCCGACGCAGTCACCTTC
TATCTCGATACCTCGGGCGAGCCGTTGTTCAAACGCGGCTTCAAGCGCGAGGCGAGCGCGGCGTCGATCAAGGAAAACCT
TGCCGCCGGCCTCCTGCTGCTCTCCGGCTGGGAGCCCGGCACGCCCTTGCTCGACCCGATGTGCGGCGCCGGCACCATCC
TGCTCGAAGCCGCCGACCTCGCGTTGAACCGCGCACCGGGCCGCGCCCGCCATTTCGCCTTCGAGCACTACCGCGACTTC
GACGCCGCGCTCTGGCAGCGCATCAAGGACGAGACCAAAGCGCTGGAAAAACCGCTGACCAAGCTGCCTATCTTCGGCGC
CGACCAGGACCGCTGGGTCCTCGACAAGGCACGCAACAACCTCGCCGTGGCCGGGTATGCGGACGCGATCGAACTCAAAG
TCTCCGACCTGCTCGACCTCAAGCCGCCGACGCCCGTCGGCACCATCGTCACCAACCCGCCCTACGGCGAACGCATCGGC
GAAGCCGAGGATCTCGCCGAGTGGTATCCGCTCCTGGGCGACTGGCTCAAGCAGAACTTCGCCGGCTGGGACGCGTGGAT
CATCTCGGGCGACCCGCTGCTGCCGAAGGCGATCGGCCTCAAGGCCAGCCGCCGCATACCGCTCTTCAACGGCCAGATCG
AGACGCGGTTCTTGCAGTACAAGCTGATTGCGGGGTCGATGAAAGTGAAGAAGCCGGAAGCTGCGAGCGGTCCCTAG

Upstream 100 bases:

>100_bases
CTGTTTGAAACCCAAGTCCGCAAACCCGCAGCCCCGCCGCAACCCGCCTCCGCGTCCTGCTCACTCCGGGCACCAAAGCC
GCCCGAAGGGCGAGCATGAG

Downstream 100 bases:

>100_bases
TGATATCCGTTTCGGCGAAGCGCTTGTCCTTCCGTTGATCCCGGTTAAACTAACCGAAATTAGTTCACCGCGAGGTCATC
ATGCTGACGGTCAACATCCA

Product: N6-adenine-specific DNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MAPRSREQLPPASHFATCPRGLEELLVAELNAAGAQVVRQLPAGVLFIADAAAEMRANLTSRTATRILRKVGYTRYKKEE
HIYRAALDLPWPEWFDVTKTIAVKVGAQNAPLKSLNFITLKIKDAICDRFREETRERPSVDTESPDVPVYAFFTPDAVTF
YLDTSGEPLFKRGFKREASAASIKENLAAGLLLLSGWEPGTPLLDPMCGAGTILLEAADLALNRAPGRARHFAFEHYRDF
DAALWQRIKDETKALEKPLTKLPIFGADQDRWVLDKARNNLAVAGYADAIELKVSDLLDLKPPTPVGTIVTNPPYGERIG
EAEDLAEWYPLLGDWLKQNFAGWDAWIISGDPLLPKAIGLKASRRIPLFNGQIETRFLQYKLIAGSMKVKKPEAASGP

Sequences:

>Translated_398_residues
MAPRSREQLPPASHFATCPRGLEELLVAELNAAGAQVVRQLPAGVLFIADAAAEMRANLTSRTATRILRKVGYTRYKKEE
HIYRAALDLPWPEWFDVTKTIAVKVGAQNAPLKSLNFITLKIKDAICDRFREETRERPSVDTESPDVPVYAFFTPDAVTF
YLDTSGEPLFKRGFKREASAASIKENLAAGLLLLSGWEPGTPLLDPMCGAGTILLEAADLALNRAPGRARHFAFEHYRDF
DAALWQRIKDETKALEKPLTKLPIFGADQDRWVLDKARNNLAVAGYADAIELKVSDLLDLKPPTPVGTIVTNPPYGERIG
EAEDLAEWYPLLGDWLKQNFAGWDAWIISGDPLLPKAIGLKASRRIPLFNGQIETRFLQYKLIAGSMKVKKPEAASGP
>Mature_397_residues
APRSREQLPPASHFATCPRGLEELLVAELNAAGAQVVRQLPAGVLFIADAAAEMRANLTSRTATRILRKVGYTRYKKEEH
IYRAALDLPWPEWFDVTKTIAVKVGAQNAPLKSLNFITLKIKDAICDRFREETRERPSVDTESPDVPVYAFFTPDAVTFY
LDTSGEPLFKRGFKREASAASIKENLAAGLLLLSGWEPGTPLLDPMCGAGTILLEAADLALNRAPGRARHFAFEHYRDFD
AALWQRIKDETKALEKPLTKLPIFGADQDRWVLDKARNNLAVAGYADAIELKVSDLLDLKPPTPVGTIVTNPPYGERIGE
AEDLAEWYPLLGDWLKQNFAGWDAWIISGDPLLPKAIGLKASRRIPLFNGQIETRFLQYKLIAGSMKVKKPEAASGP

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=387, Percent_Identity=36.4341085271318, Blast_Score=225, Evalue=3e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 44120; Mature: 43989

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAPRSREQLPPASHFATCPRGLEELLVAELNAAGAQVVRQLPAGVLFIADAAAEMRANLT
CCCCCCCCCCCHHHHHHCHHHHHHHHHHHHCHHHHHHHHHCCCCEEEEEHHHHHHHHHHH
SRTATRILRKVGYTRYKKEEHIYRAALDLPWPEWFDVTKTIAVKVGAQNAPLKSLNFITL
HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHEEEEEEECCCCCCCCCCEEEEE
KIKDAICDRFREETRERPSVDTESPDVPVYAFFTPDAVTFYLDTSGEPLFKRGFKREASA
EEHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCHHHHHCCCCCHHH
ASIKENLAAGLLLLSGWEPGTPLLDPMCGAGTILLEAADLALNRAPGRARHFAFEHYRDF
HHHHHHHHHHEEEEECCCCCCCCCCCCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHH
DAALWQRIKDETKALEKPLTKLPIFGADQDRWVLDKARNNLAVAGYADAIELKVSDLLDL
HHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCHHHHHCCCEEEEECCCEEEEEHHHHHCC
KPPTPVGTIVTNPPYGERIGEAEDLAEWYPLLGDWLKQNFAGWDAWIISGDPLLPKAIGL
CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCC
KASRRIPLFNGQIETRFLQYKLIAGSMKVKKPEAASGP
CCCCCCCEECCCHHHHEEEEEEEECCCEECCCCCCCCC
>Mature Secondary Structure 
APRSREQLPPASHFATCPRGLEELLVAELNAAGAQVVRQLPAGVLFIADAAAEMRANLT
CCCCCCCCCCHHHHHHCHHHHHHHHHHHHCHHHHHHHHHCCCCEEEEEHHHHHHHHHHH
SRTATRILRKVGYTRYKKEEHIYRAALDLPWPEWFDVTKTIAVKVGAQNAPLKSLNFITL
HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHEEEEEEECCCCCCCCCCEEEEE
KIKDAICDRFREETRERPSVDTESPDVPVYAFFTPDAVTFYLDTSGEPLFKRGFKREASA
EEHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCEEEEEEECCCCHHHHHCCCCCHHH
ASIKENLAAGLLLLSGWEPGTPLLDPMCGAGTILLEAADLALNRAPGRARHFAFEHYRDF
HHHHHHHHHHEEEEECCCCCCCCCCCCCCCCEEEEEHHHHHHHCCCCHHHHHHHHHHHHH
DAALWQRIKDETKALEKPLTKLPIFGADQDRWVLDKARNNLAVAGYADAIELKVSDLLDL
HHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCHHHHHCCCEEEEECCCEEEEEHHHHHCC
KPPTPVGTIVTNPPYGERIGEAEDLAEWYPLLGDWLKQNFAGWDAWIISGDPLLPKAIGL
CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCC
KASRRIPLFNGQIETRFLQYKLIAGSMKVKKPEAASGP
CCCCCCCEECCCHHHHEEEEEEEECCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]