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The map label for this gene is yacF [C]

Identifier: 74318384

GI number: 74318384

Start: 2440525

End: 2441280

Strand: Reverse

Name: yacF [C]

Synonym: Tbd_2366

Alternate gene names: 74318384

Gene position: 2441280-2440525 (Counterclockwise)

Preceding gene: 74318385

Following gene: 74318383

Centisome position: 83.9

GC content: 63.23

Gene sequence:

>756_bases
GTGATTCACTACGAATATCCCCTGAGCGAACGGATCCGCACCCTGTTGCGGCTCGAAGATCTGTTCGAACGTTTCGATGC
CCATGCCATGTCTTCCGCTGCGCAGGCGCATCACGCCGCGCTTCTGACTTTGTTCGAGATGGCGGAAGTGGCGGCGCGTG
CCGACCTCAAGTCCGACCTGTTGCAGGAGCTCGACCGGCAGAAGGCCGTGCTGACCGCCTTGCGCGGCAATCCTCACGTC
CAGTCGGCAACTCTGGAGCAGGTTCTGGCCGCGATCGACGCGGCACACGACGGCATGTATCAGCTTCCGGGCAAAGTCGG
CAATCATCTGCGCGAGGACGACTGGCTGATGGCGGTCAAACAGCGTGCGGCGATCCCCGGCGGAATGTGCGAATTCGACC
TGCCTTCCTACCACTACTGGTTGCATCAGCCTGCCGAGCAGCGCGTGGGCCAGTTGCAGGCCTGGGGCGCGCCGTTCGCT
TCGATCCGCGCGGCGGTCGGAATCGTGCTCGGCCTGCTGCGCGACAGCGGTCAGCCTGAGTCGCAGGAGGCAGCCAAGGG
ACATTACCAGCGCATGCTCGAGTCGCGCAATCCGCAGCTGATCCGCGTCACCCTGGCGGATCATGTGCCCTGCGTTCCCG
AAATATCGGCGAACAAGTACATGCTCAACATCCGCTTCGTGCACGCCGGGGTCGGCGCGCCGCGAGGCTGTGCCAGCGAG
TCGATCCAGTTCGAACTGACGTTTTGCACCTTATGA

Upstream 100 bases:

>100_bases
GCGCTGCATCAGCGCTATCTCACGCTCGCTGCAAACCGTCTGCCTTGATTTTCAGGACGGATCGGCGACAATCGGGTGAA
CCCAACCGACGCGTTGCCGC

Downstream 100 bases:

>100_bases
CGAATGCGAGCAAGCCGCCGGTCGTCAATTGTCCGATTTGCGGGGCAACGGTGAAGTGGCTCGCCGAGAACCGCTGGAAA
CCGTTCTGCAGCGAACGCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MIHYEYPLSERIRTLLRLEDLFERFDAHAMSSAAQAHHAALLTLFEMAEVAARADLKSDLLQELDRQKAVLTALRGNPHV
QSATLEQVLAAIDAAHDGMYQLPGKVGNHLREDDWLMAVKQRAAIPGGMCEFDLPSYHYWLHQPAEQRVGQLQAWGAPFA
SIRAAVGIVLGLLRDSGQPESQEAAKGHYQRMLESRNPQLIRVTLADHVPCVPEISANKYMLNIRFVHAGVGAPRGCASE
SIQFELTFCTL

Sequences:

>Translated_251_residues
MIHYEYPLSERIRTLLRLEDLFERFDAHAMSSAAQAHHAALLTLFEMAEVAARADLKSDLLQELDRQKAVLTALRGNPHV
QSATLEQVLAAIDAAHDGMYQLPGKVGNHLREDDWLMAVKQRAAIPGGMCEFDLPSYHYWLHQPAEQRVGQLQAWGAPFA
SIRAAVGIVLGLLRDSGQPESQEAAKGHYQRMLESRNPQLIRVTLADHVPCVPEISANKYMLNIRFVHAGVGAPRGCASE
SIQFELTFCTL
>Mature_251_residues
MIHYEYPLSERIRTLLRLEDLFERFDAHAMSSAAQAHHAALLTLFEMAEVAARADLKSDLLQELDRQKAVLTALRGNPHV
QSATLEQVLAAIDAAHDGMYQLPGKVGNHLREDDWLMAVKQRAAIPGGMCEFDLPSYHYWLHQPAEQRVGQLQAWGAPFA
SIRAAVGIVLGLLRDSGQPESQEAAKGHYQRMLESRNPQLIRVTLADHVPCVPEISANKYMLNIRFVHAGVGAPRGCASE
SIQFELTFCTL

Specific function: Unknown

COG id: COG4582

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0289 family

Homologues:

Organism=Escherichia coli, GI1786291, Length=252, Percent_Identity=33.7301587301587, Blast_Score=140, Evalue=8e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2366_THIDA (Q3SGD1)

Other databases:

- EMBL:   CP000116
- RefSeq:   YP_316124.1
- ProteinModelPortal:   Q3SGD1
- SMR:   Q3SGD1
- STRING:   Q3SGD1
- GeneID:   3671859
- GenomeReviews:   CP000116_GR
- KEGG:   tbd:Tbd_2366
- NMPDR:   fig|292415.3.peg.2439
- eggNOG:   COG4582
- HOGENOM:   HBG432810
- OMA:   CYPTISG
- PhylomeDB:   Q3SGD1
- ProtClustDB:   PRK05287
- BioCyc:   TDEN292415:TBD_2366-MONOMER
- HAMAP:   MF_01092
- InterPro:   IPR009777

Pfam domain/function: PF07072 DUF1342

EC number: NA

Molecular weight: Translated: 27930; Mature: 27930

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIHYEYPLSERIRTLLRLEDLFERFDAHAMSSAAQAHHAALLTLFEMAEVAARADLKSDL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQELDRQKAVLTALRGNPHVQSATLEQVLAAIDAAHDGMYQLPGKVGNHLREDDWLMAVK
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCHHHHHCCCCHHHHHHHH
QRAAIPGGMCEFDLPSYHYWLHQPAEQRVGQLQAWGAPFASIRAAVGIVLGLLRDSGQPE
HHHCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
SQEAAKGHYQRMLESRNPQLIRVTLADHVPCVPEISANKYMLNIRFVHAGVGAPRGCASE
HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCC
SIQFELTFCTL
CEEEEEEEECC
>Mature Secondary Structure
MIHYEYPLSERIRTLLRLEDLFERFDAHAMSSAAQAHHAALLTLFEMAEVAARADLKSDL
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQELDRQKAVLTALRGNPHVQSATLEQVLAAIDAAHDGMYQLPGKVGNHLREDDWLMAVK
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEECCHHHHHCCCCHHHHHHHH
QRAAIPGGMCEFDLPSYHYWLHQPAEQRVGQLQAWGAPFASIRAAVGIVLGLLRDSGQPE
HHHCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCC
SQEAAKGHYQRMLESRNPQLIRVTLADHVPCVPEISANKYMLNIRFVHAGVGAPRGCASE
HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCCC
SIQFELTFCTL
CEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA