| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is phnL [H]
Identifier: 74318309
GI number: 74318309
Start: 2365785
End: 2366507
Strand: Reverse
Name: phnL [H]
Synonym: Tbd_2291
Alternate gene names: 74318309
Gene position: 2366507-2365785 (Counterclockwise)
Preceding gene: 74318310
Following gene: 74318308
Centisome position: 81.33
GC content: 68.88
Gene sequence:
>723_bases ATGACCCCCCCCATACTCCAGGTCGAAGGCTACGCCAAGCATTTCCAGCTGCACGAGCAGAACAAGCTGATCCCGTCCTC GCACAACGTCAGCTTCACGGTACGCAGCGGCGAACTCACGGCCCTGATCGGCCCCACCGGCGCCGGCAAGTCCTCGGTGC TGAAAGGCATCTACCGCACCTATCTGCCGAGCGCCGGCCGCATGCTTTATCGCGACGCGCTGGGCCACGAACTCGATCTG GCCCTGGCCAGCGAGCACCAGATCCTGGAGCTGCGGCGCCGCGAAATCGGCTTCGTCACCCAGTTTCTGCATTGCCTGCC GCGCCAGGCGACGCTCGACGTGGTGGCGCAGCCGCTGTTCGCGCTGGGCGTCCCGCGCCCGGAAGCGAGGCAGCGCGCCG CCGACCTGCTCTCGGCCATGAAGCTGCCGGAGCGCCTGTGGAGCGTCTCGCCGGCGACCTTCTCCGGCGGCGAACGCCAG CGGGTGAACCTCGCCCGCGGCTTCATCGCCCGCCCGCGCCTGCTGCTGCTCGACGAGCCCACGGCCAGCCTCGACCCGGC GACCGCCGAATGCGTGATCGGCCTGATCGAAGGGCTGAAGGCCGGGGGCACGGCCATGCTCGCCATTTTCCACCACCCCG AAACCACCCGCCGGCTGGCCGACCAGGTCGTCGAATTGGCCCCACCGCCCGCCGTGGAAACCCTCCTCAAGGAAATCGCA TGA
Upstream 100 bases:
>100_bases GGCCGCGTCATCGAGACGGGGCTCACCGATCAAATCCTGGAAGATCCCCAGCACGCCTATACCCAGCGGCTGGTGGCTTC CGCCCTGTGAGGCGCGCGAC
Downstream 100 bases:
>100_bases ACCCGCTGTATCTGACCGGCGCCCGCGTGGTGCTGCCCGACGCCGTGCTCGAAGACGCCGCCGTGCTGATCGAGGACGGC GTCATCGCCGCCATCGACCC
Product: phosphonate ABC transporter ATPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 240; Mature: 239
Protein sequence:
>240_residues MTPPILQVEGYAKHFQLHEQNKLIPSSHNVSFTVRSGELTALIGPTGAGKSSVLKGIYRTYLPSAGRMLYRDALGHELDL ALASEHQILELRRREIGFVTQFLHCLPRQATLDVVAQPLFALGVPRPEARQRAADLLSAMKLPERLWSVSPATFSGGERQ RVNLARGFIARPRLLLLDEPTASLDPATAECVIGLIEGLKAGGTAMLAIFHHPETTRRLADQVVELAPPPAVETLLKEIA
Sequences:
>Translated_240_residues MTPPILQVEGYAKHFQLHEQNKLIPSSHNVSFTVRSGELTALIGPTGAGKSSVLKGIYRTYLPSAGRMLYRDALGHELDL ALASEHQILELRRREIGFVTQFLHCLPRQATLDVVAQPLFALGVPRPEARQRAADLLSAMKLPERLWSVSPATFSGGERQ RVNLARGFIARPRLLLLDEPTASLDPATAECVIGLIEGLKAGGTAMLAIFHHPETTRRLADQVVELAPPPAVETLLKEIA >Mature_239_residues TPPILQVEGYAKHFQLHEQNKLIPSSHNVSFTVRSGELTALIGPTGAGKSSVLKGIYRTYLPSAGRMLYRDALGHELDLA LASEHQILELRRREIGFVTQFLHCLPRQATLDVVAQPLFALGVPRPEARQRAADLLSAMKLPERLWSVSPATFSGGERQR VNLARGFIARPRLLLLDEPTASLDPATAECVIGLIEGLKAGGTAMLAIFHHPETTRRLADQVVELAPPPAVETLLKEIA
Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]
COG id: COG4778
COG function: function code P; ABC-type phosphonate transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI11967971, Length=218, Percent_Identity=28.4403669724771, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI255708477, Length=205, Percent_Identity=29.2682926829268, Blast_Score=70, Evalue=2e-12, Organism=Escherichia coli, GI1790534, Length=221, Percent_Identity=43.4389140271493, Blast_Score=186, Evalue=1e-48, Organism=Escherichia coli, GI87081834, Length=225, Percent_Identity=35.5555555555556, Blast_Score=125, Evalue=3e-30, Organism=Escherichia coli, GI1786398, Length=218, Percent_Identity=32.1100917431193, Blast_Score=112, Evalue=2e-26, Organism=Escherichia coli, GI1788225, Length=220, Percent_Identity=31.3636363636364, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1789672, Length=221, Percent_Identity=30.7692307692308, Blast_Score=104, Evalue=4e-24, Organism=Escherichia coli, GI1787029, Length=199, Percent_Identity=30.1507537688442, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1789873, Length=198, Percent_Identity=33.8383838383838, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1787089, Length=206, Percent_Identity=29.6116504854369, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1787105, Length=212, Percent_Identity=30.6603773584906, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1789962, Length=243, Percent_Identity=26.7489711934156, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI1786703, Length=183, Percent_Identity=34.9726775956284, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1789891, Length=240, Percent_Identity=29.5833333333333, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI145693107, Length=247, Percent_Identity=30.7692307692308, Blast_Score=90, Evalue=1e-19, Organism=Escherichia coli, GI1789032, Length=178, Percent_Identity=32.0224719101124, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1787759, Length=252, Percent_Identity=30.952380952381, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1788644, Length=204, Percent_Identity=31.8627450980392, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1788506, Length=210, Percent_Identity=31.9047619047619, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI48994997, Length=214, Percent_Identity=30.3738317757009, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786319, Length=197, Percent_Identity=27.4111675126904, Blast_Score=81, Evalue=5e-17, Organism=Escherichia coli, GI1786698, Length=206, Percent_Identity=27.6699029126214, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI87081709, Length=157, Percent_Identity=31.8471337579618, Blast_Score=78, Evalue=4e-16, Organism=Escherichia coli, GI1787547, Length=241, Percent_Identity=27.3858921161826, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1787500, Length=241, Percent_Identity=25.3112033195021, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1789593, Length=189, Percent_Identity=32.8042328042328, Blast_Score=77, Evalue=7e-16, Organism=Escherichia coli, GI87081791, Length=221, Percent_Identity=27.1493212669683, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790544, Length=238, Percent_Identity=25.6302521008403, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1787370, Length=223, Percent_Identity=28.2511210762332, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1788761, Length=210, Percent_Identity=31.4285714285714, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1788450, Length=161, Percent_Identity=31.055900621118, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI48994883, Length=207, Percent_Identity=28.0193236714976, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI48995001, Length=230, Percent_Identity=28.2608695652174, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1786563, Length=212, Percent_Identity=31.1320754716981, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI87082268, Length=200, Percent_Identity=27, Blast_Score=71, Evalue=5e-14, Organism=Escherichia coli, GI1790190, Length=223, Percent_Identity=26.0089686098655, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1790467, Length=201, Percent_Identity=26.3681592039801, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1786872, Length=192, Percent_Identity=28.6458333333333, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1787712, Length=156, Percent_Identity=30.7692307692308, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1789963, Length=245, Percent_Identity=26.530612244898, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI1790162, Length=214, Percent_Identity=28.9719626168224, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1787792, Length=194, Percent_Identity=29.8969072164948, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786253, Length=211, Percent_Identity=30.8056872037915, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787758, Length=215, Percent_Identity=23.7209302325581, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786345, Length=207, Percent_Identity=31.4009661835749, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1788053, Length=162, Percent_Identity=33.3333333333333, Blast_Score=62, Evalue=2e-11, Organism=Escherichia coli, GI1788165, Length=174, Percent_Identity=31.0344827586207, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1789991, Length=215, Percent_Identity=25.5813953488372, Blast_Score=61, Evalue=8e-11, Organism=Caenorhabditis elegans, GI115534520, Length=212, Percent_Identity=27.8301886792453, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17558664, Length=207, Percent_Identity=26.5700483091787, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI115533608, Length=200, Percent_Identity=28.5, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17559834, Length=207, Percent_Identity=28.5024154589372, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17569145, Length=217, Percent_Identity=26.2672811059908, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI85816269, Length=207, Percent_Identity=29.4685990338164, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24580553, Length=207, Percent_Identity=29.4685990338164, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI85724864, Length=207, Percent_Identity=29.4685990338164, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI24580555, Length=207, Percent_Identity=29.4685990338164, Blast_Score=79, Evalue=2e-15, Organism=Drosophila melanogaster, GI85726357, Length=252, Percent_Identity=28.5714285714286, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24662800, Length=209, Percent_Identity=29.1866028708134, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24581191, Length=193, Percent_Identity=30.0518134715026, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24581189, Length=193, Percent_Identity=30.0518134715026, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24581193, Length=193, Percent_Identity=30.0518134715026, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24581195, Length=193, Percent_Identity=30.0518134715026, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI24659289, Length=214, Percent_Identity=28.5046728971963, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI28574744, Length=188, Percent_Identity=29.2553191489362, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI21357907, Length=209, Percent_Identity=31.1004784688995, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24653245, Length=219, Percent_Identity=26.4840182648402, Blast_Score=64, Evalue=7e-11, Organism=Drosophila melanogaster, GI281363262, Length=219, Percent_Identity=26.4840182648402, Blast_Score=64, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR012701 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 26243; Mature: 26112
Theoretical pI: Translated: 8.72; Mature: 8.72
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPPILQVEGYAKHFQLHEQNKLIPSSHNVSFTVRSGELTALIGPTGAGKSSVLKGIYRT CCCCCEEECCHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHH YLPSAGRMLYRDALGHELDLALASEHQILELRRREIGFVTQFLHCLPRQATLDVVAQPLF HCCCCCHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH ALGVPRPEARQRAADLLSAMKLPERLWSVSPATFSGGERQRVNLARGFIARPRLLLLDEP HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECC TASLDPATAECVIGLIEGLKAGGTAMLAIFHHPETTRRLADQVVELAPPPAVETLLKEIA CCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHC >Mature Secondary Structure TPPILQVEGYAKHFQLHEQNKLIPSSHNVSFTVRSGELTALIGPTGAGKSSVLKGIYRT CCCCEEECCHHHHHHHHHCCCCCCCCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHHH YLPSAGRMLYRDALGHELDLALASEHQILELRRREIGFVTQFLHCLPRQATLDVVAQPLF HCCCCCHHHHHHHCCCCEEHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH ALGVPRPEARQRAADLLSAMKLPERLWSVSPATFSGGERQRVNLARGFIARPRLLLLDEP HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECC TASLDPATAECVIGLIEGLKAGGTAMLAIFHHPETTRRLADQVVELAPPPAVETLLKEIA CCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHCCCCHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]