| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is gfo [H]
Identifier: 74318276
GI number: 74318276
Start: 2332363
End: 2333529
Strand: Reverse
Name: gfo [H]
Synonym: Tbd_2258
Alternate gene names: 74318276
Gene position: 2333529-2332363 (Counterclockwise)
Preceding gene: 74318277
Following gene: 74318275
Centisome position: 80.2
GC content: 67.35
Gene sequence:
>1167_bases ATGGCTCGTACAAGCAAGCGGGCGGCGACTGCCCCCGGGGTGAAGGCCGCGCCGCGACGCGGCAGAAAGATCCGCTACGC CGTCGTCGGCCTCGGCTACATCGCGCAGATCGCCGTGCTGCCGGCTTTTGCCCAGGCCGCGAAGAACGCCGAACTCGCGG CGCTGGTGTCGGATGACCCGGTCAAGCTCAAGAAGCTGGCGAAGCAATACGGCGTCCCGCGCGTCGCGAGCTACGCGGAA TACGACGCGCTGCTGGCGAGCGGCGAGATCGACGCCGTCTACATCGCGCTGCCCAACCACCTGCACCTCGATTACACATT GCGCGCGGCGCGCGCCGGGGTGCACGTGCTGTGCGAAAAACCGATGGCGGTGACCGAGGCCGAATGCCGGCGCATGACGC GTGAATGCGAAAAGCGCGGGGTCAAGCTGATGATCGCCTACCGTCTGCACTTCGAGAAGGCGAATCTCGCGGCGGCCGAA CTCGTCAATTCGGGCAAGCTCGGCGACGCGCGGATTTTCAATTCGGTGTTCACGATGCAGGTCAACGATCCCGACAACAT CCGCCTGCAGGACGAAACCGGCGGCGGGGTGCTCTACGACATCGGCGTCTACTGCATCAACGCTGCGCGTTACCTGTTTC GCGACGAGCCGACCGAGGTCTTCGCGGCGACGGCGCGCAAGCCGGACGCGCGCTTCGACGAGGTCGAGGAGATGGCGAGC GCGCTCATGCGCTTTCCGGGCGACCGCCTCGCGAGCTTCACCGCGAGCTTCGGCGCGGCCCGCGGCTCGTCCTACGAGGT CGTCGGCACCAAGGGTTCATTGCGCGTCGCGCCCGCCTACGGTTACGCCGAGGATCTCAAACACGTCGTGACGATCGGCG GCAAGACGCGGGAGCGCGTGTTTCCGCGCGGCGACCAGTTCGCCCCGCAACTGCTCTATTTCTCCGATTGCATCCTGCAG GACCGGACGCCCGAGCCTTCGGGCGAGGAGGGCCGGCTCGACGTGCGCATTATCGAGGCGCTCTACCGCTCGGCCAAAAT CGGAAAGCTCGTCCGCCTCGCGCCCGCCGGCAAGGTGGAGCGGCCCGACAGCGATCAGGAACGCTCGCGGCCGCCGATCG ACAAACCGCGGCTCGTGCGCGCCCGCGCGCCATCTGACAAGGGCTAG
Upstream 100 bases:
>100_bases GGCGAAGAAGGGGGCGCAGACGCGTGCGCGCAACGCCGCGAAAAGGAAGGCCGCTTCCTGAGCGGCCGTCGCCGCCTGCA GCGCATCGAGGAGATTCCGT
Downstream 100 bases:
>100_bases GCTGCGCCTGCAGCGCTCGCGTCGGTCGGAGAATCCCTACACGGCCCCCTCCGGCCCGCTCACGCCTTTCTCAGTACAAC CGGATTTCGCGCCCCGGGGC
Product: putative glucose-fructose oxidoreductase protein
Products: NA
Alternate protein names: GFOR [H]
Number of amino acids: Translated: 388; Mature: 387
Protein sequence:
>388_residues MARTSKRAATAPGVKAAPRRGRKIRYAVVGLGYIAQIAVLPAFAQAAKNAELAALVSDDPVKLKKLAKQYGVPRVASYAE YDALLASGEIDAVYIALPNHLHLDYTLRAARAGVHVLCEKPMAVTEAECRRMTRECEKRGVKLMIAYRLHFEKANLAAAE LVNSGKLGDARIFNSVFTMQVNDPDNIRLQDETGGGVLYDIGVYCINAARYLFRDEPTEVFAATARKPDARFDEVEEMAS ALMRFPGDRLASFTASFGAARGSSYEVVGTKGSLRVAPAYGYAEDLKHVVTIGGKTRERVFPRGDQFAPQLLYFSDCILQ DRTPEPSGEEGRLDVRIIEALYRSAKIGKLVRLAPAGKVERPDSDQERSRPPIDKPRLVRARAPSDKG
Sequences:
>Translated_388_residues MARTSKRAATAPGVKAAPRRGRKIRYAVVGLGYIAQIAVLPAFAQAAKNAELAALVSDDPVKLKKLAKQYGVPRVASYAE YDALLASGEIDAVYIALPNHLHLDYTLRAARAGVHVLCEKPMAVTEAECRRMTRECEKRGVKLMIAYRLHFEKANLAAAE LVNSGKLGDARIFNSVFTMQVNDPDNIRLQDETGGGVLYDIGVYCINAARYLFRDEPTEVFAATARKPDARFDEVEEMAS ALMRFPGDRLASFTASFGAARGSSYEVVGTKGSLRVAPAYGYAEDLKHVVTIGGKTRERVFPRGDQFAPQLLYFSDCILQ DRTPEPSGEEGRLDVRIIEALYRSAKIGKLVRLAPAGKVERPDSDQERSRPPIDKPRLVRARAPSDKG >Mature_387_residues ARTSKRAATAPGVKAAPRRGRKIRYAVVGLGYIAQIAVLPAFAQAAKNAELAALVSDDPVKLKKLAKQYGVPRVASYAEY DALLASGEIDAVYIALPNHLHLDYTLRAARAGVHVLCEKPMAVTEAECRRMTRECEKRGVKLMIAYRLHFEKANLAAAEL VNSGKLGDARIFNSVFTMQVNDPDNIRLQDETGGGVLYDIGVYCINAARYLFRDEPTEVFAATARKPDARFDEVEEMASA LMRFPGDRLASFTASFGAARGSSYEVVGTKGSLRVAPAYGYAEDLKHVVTIGGKTRERVFPRGDQFAPQLLYFSDCILQD RTPEPSGEEGRLDVRIIEALYRSAKIGKLVRLAPAGKVERPDSDQERSRPPIDKPRLVRARAPSDKG
Specific function: Unknown
COG id: COG0673
COG function: function code R; Predicted dehydrogenases and related proteins
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gfo/idh/mocA family [H]
Homologues:
Organism=Homo sapiens, GI7657212, Length=257, Percent_Identity=28.0155642023346, Blast_Score=102, Evalue=6e-22, Organism=Escherichia coli, GI87082405, Length=281, Percent_Identity=24.9110320284698, Blast_Score=98, Evalue=1e-21, Organism=Escherichia coli, GI1787574, Length=352, Percent_Identity=25.2840909090909, Blast_Score=82, Evalue=8e-17, Organism=Escherichia coli, GI87081947, Length=254, Percent_Identity=26.7716535433071, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI145693182, Length=209, Percent_Identity=29.1866028708134, Blast_Score=62, Evalue=8e-11, Organism=Drosophila melanogaster, GI24581117, Length=282, Percent_Identity=25.531914893617, Blast_Score=100, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008354 - InterPro: IPR016040 - InterPro: IPR000683 - InterPro: IPR004104 - InterPro: IPR006311 [H]
Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]
EC number: =1.1.99.28 [H]
Molecular weight: Translated: 42574; Mature: 42443
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARTSKRAATAPGVKAAPRRGRKIRYAVVGLGYIAQIAVLPAFAQAAKNAELAALVSDDP CCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC VKLKKLAKQYGVPRVASYAEYDALLASGEIDAVYIALPNHLHLDYTLRAARAGVHVLCEK HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEHHHHHCCEEEEECC PMAVTEAECRRMTRECEKRGVKLMIAYRLHFEKANLAAAELVNSGKLGDARIFNSVFTMQ CCCCCHHHHHHHHHHHHHCCCEEEEEEEEEECHHHHHHHHHHCCCCCCCHHEECEEEEEE VNDPDNIRLQDETGGGVLYDIGVYCINAARYLFRDEPTEVFAATARKPDARFDEVEEMAS ECCCCCEEEEECCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHH ALMRFPGDRLASFTASFGAARGSSYEVVGTKGSLRVAPAYGYAEDLKHVVTIGGKTRERV HHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCHHHHHHHEECCCCHHHHC FPRGDQFAPQLLYFSDCILQDRTPEPSGEEGRLDVRIIEALYRSAKIGKLVRLAPAGKVE CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCC RPDSDQERSRPPIDKPRLVRARAPSDKG CCCCHHHHCCCCCCCCCEEEECCCCCCC >Mature Secondary Structure ARTSKRAATAPGVKAAPRRGRKIRYAVVGLGYIAQIAVLPAFAQAAKNAELAALVSDDP CCCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCEEEEEECCCC VKLKKLAKQYGVPRVASYAEYDALLASGEIDAVYIALPNHLHLDYTLRAARAGVHVLCEK HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCEEEEEEEHHHHHCCEEEEECC PMAVTEAECRRMTRECEKRGVKLMIAYRLHFEKANLAAAELVNSGKLGDARIFNSVFTMQ CCCCCHHHHHHHHHHHHHCCCEEEEEEEEEECHHHHHHHHHHCCCCCCCHHEECEEEEEE VNDPDNIRLQDETGGGVLYDIGVYCINAARYLFRDEPTEVFAATARKPDARFDEVEEMAS ECCCCCEEEEECCCCEEEEHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHH ALMRFPGDRLASFTASFGAARGSSYEVVGTKGSLRVAPAYGYAEDLKHVVTIGGKTRERV HHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCCEEEEECCCCHHHHHHHEECCCCHHHHC FPRGDQFAPQLLYFSDCILQDRTPEPSGEEGRLDVRIIEALYRSAKIGKLVRLAPAGKVE CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCC RPDSDQERSRPPIDKPRLVRARAPSDKG CCCCHHHHCCCCCCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1537789; 8472911; 8994968 [H]