| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
Click here to switch to the map view.
The map label for this gene is yjgN [C]
Identifier: 74318094
GI number: 74318094
Start: 2169409
End: 2170455
Strand: Direct
Name: yjgN [C]
Synonym: Tbd_2076
Alternate gene names: 74318094
Gene position: 2169409-2170455 (Clockwise)
Preceding gene: 74318093
Following gene: 74318095
Centisome position: 74.56
GC content: 64.76
Gene sequence:
>1047_bases ATGTCGCTCACCAAGCAGTATCCGATGCAGTTCACCGGCACCGGCCGCGAGTACTTCGTCATCTGGATCGTCAACATCGC ACTCACGCTCGTCACCTTCGGCATTTATTCAGCCTGGGCCAAGGTGCGCACCCTGCGCTGGTTCTACGGCCATACCCGCC TCGACGACCAGGTGTTTTCCTATCTCGCCACGCCGCTGCAGATTCTCCGCGGCCGGCTGATCGCGCTCGCTGCGATCGCC GCGTATTACGCGACCTCGTATTTCGCCCCGCGGCTCGCGATCGTGCTGATGCTTGTGTTTCTCGTCTTGCTGCCGTGGAT CATCGTCAACAGCCTGCGCTTCCACGCGCGCCAGAGCGCCTATCGCGGCCTGCGCTTCGACTTCACCGGATCCGTCGGCG AGGCCGCACGAATCTTCATCGGCCTGCAATTGCTGATTCCGTTCACGCTCGGCCTGATCCTGCCCTACGTCGCCTACCGC CAGGTCAGGTTCATCGCGGGGAACACCGTCTACGGCCAGACCGGCGCGCGCTACGAGGGCTCGCACAAGCCTTTCTGGGG CGTTTATCTGCTGAGTCTCGGCCTGATCCTGTTGCCGCTCGCGATCATCGCGTTTGGCGCGTATCAGGTGTATGCGTTGC GTGCGGCCGGCATCCCTCCGGAAACGGCGGCCGCCGCGGCCGGCAGCTATCTGCTCGCCGGCATGGCCGTGTTCTACCTG ATGATTCCGGTGATCGGCGCACTGATCCAGGCGCGCACCGCCAACCTGCTATACAACGGCGCGGCTCTCGGCCCGGTCGG TTTCGCCTCGCGTCAGCGTGCCCGTGACCTGATCTGGATCTACCTGTCGAACCTCGTGCTGATCGCACTGACGCTCGGCC TCTTCATTCCCTGGGCGAAGGTGCGCCTGGCGCGATACCGCGCCCGCAGCCTGACGGTCAACGGCCCGCACGACCTCGGC GGCTTCGTCGCCGGCCAGCACCAGAGCAGCACCGCCACTGGCTCGGAGATGGCCGACCTGCTCGACCTCAATTTCGGGCT GACGTGA
Upstream 100 bases:
>100_bases CCTGACAGAAATTCTTCCCCCGGGGTTTGTCAAGAATCGTCCCGGTGCTGCCGTTGACGCACCCACGACATAACGACAAA CCACTCAGGGAGGAACAAAC
Downstream 100 bases:
>100_bases TCCGCTTCGCGGCGGATTACTTCGACGGCGAGACGTCGCGCGCGCACGCGGTCGAAGCCAGCGTCGACGCCGGCCACCTG CGCGTGCGCGGCGGCGCCGT
Product: transmembrane protein
Products: NA
Alternate protein names: Innner Membrane Protein
Number of amino acids: Translated: 348; Mature: 347
Protein sequence:
>348_residues MSLTKQYPMQFTGTGREYFVIWIVNIALTLVTFGIYSAWAKVRTLRWFYGHTRLDDQVFSYLATPLQILRGRLIALAAIA AYYATSYFAPRLAIVLMLVFLVLLPWIIVNSLRFHARQSAYRGLRFDFTGSVGEAARIFIGLQLLIPFTLGLILPYVAYR QVRFIAGNTVYGQTGARYEGSHKPFWGVYLLSLGLILLPLAIIAFGAYQVYALRAAGIPPETAAAAAGSYLLAGMAVFYL MIPVIGALIQARTANLLYNGAALGPVGFASRQRARDLIWIYLSNLVLIALTLGLFIPWAKVRLARYRARSLTVNGPHDLG GFVAGQHQSSTATGSEMADLLDLNFGLT
Sequences:
>Translated_348_residues MSLTKQYPMQFTGTGREYFVIWIVNIALTLVTFGIYSAWAKVRTLRWFYGHTRLDDQVFSYLATPLQILRGRLIALAAIA AYYATSYFAPRLAIVLMLVFLVLLPWIIVNSLRFHARQSAYRGLRFDFTGSVGEAARIFIGLQLLIPFTLGLILPYVAYR QVRFIAGNTVYGQTGARYEGSHKPFWGVYLLSLGLILLPLAIIAFGAYQVYALRAAGIPPETAAAAAGSYLLAGMAVFYL MIPVIGALIQARTANLLYNGAALGPVGFASRQRARDLIWIYLSNLVLIALTLGLFIPWAKVRLARYRARSLTVNGPHDLG GFVAGQHQSSTATGSEMADLLDLNFGLT >Mature_347_residues SLTKQYPMQFTGTGREYFVIWIVNIALTLVTFGIYSAWAKVRTLRWFYGHTRLDDQVFSYLATPLQILRGRLIALAAIAA YYATSYFAPRLAIVLMLVFLVLLPWIIVNSLRFHARQSAYRGLRFDFTGSVGEAARIFIGLQLLIPFTLGLILPYVAYRQ VRFIAGNTVYGQTGARYEGSHKPFWGVYLLSLGLILLPLAIIAFGAYQVYALRAAGIPPETAAAAAGSYLLAGMAVFYLM IPVIGALIQARTANLLYNGAALGPVGFASRQRARDLIWIYLSNLVLIALTLGLFIPWAKVRLARYRARSLTVNGPHDLGG FVAGQHQSSTATGSEMADLLDLNFGLT
Specific function: Unknown
COG id: COG4269
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38390; Mature: 38259
Theoretical pI: Translated: 10.38; Mature: 10.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLTKQYPMQFTGTGREYFVIWIVNIALTLVTFGIYSAWAKVRTLRWFYGHTRLDDQVFS CCCCCCCCCEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH YLATPLQILRGRLIALAAIAAYYATSYFAPRLAIVLMLVFLVLLPWIIVNSLRFHARQSA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YRGLRFDFTGSVGEAARIFIGLQLLIPFTLGLILPYVAYRQVRFIAGNTVYGQTGARYEG HCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCEEECCCCCCCCC SHKPFWGVYLLSLGLILLPLAIIAFGAYQVYALRAAGIPPETAAAAAGSYLLAGMAVFYL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHCCCCCCHHHHHHHHHHHHHHHHHHHH MIPVIGALIQARTANLLYNGAALGPVGFASRQRARDLIWIYLSNLVLIALTLGLFIPWAK HHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRLARYRARSLTVNGPHDLGGFVAGQHQSSTATGSEMADLLDLNFGLT HHHHHHHHHEEECCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCC >Mature Secondary Structure SLTKQYPMQFTGTGREYFVIWIVNIALTLVTFGIYSAWAKVRTLRWFYGHTRLDDQVFS CCCCCCCCEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH YLATPLQILRGRLIALAAIAAYYATSYFAPRLAIVLMLVFLVLLPWIIVNSLRFHARQSA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YRGLRFDFTGSVGEAARIFIGLQLLIPFTLGLILPYVAYRQVRFIAGNTVYGQTGARYEG HCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCEEECCCCCCCCC SHKPFWGVYLLSLGLILLPLAIIAFGAYQVYALRAAGIPPETAAAAAGSYLLAGMAVFYL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEHCCCCCCHHHHHHHHHHHHHHHHHHHH MIPVIGALIQARTANLLYNGAALGPVGFASRQRARDLIWIYLSNLVLIALTLGLFIPWAK HHHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VRLARYRARSLTVNGPHDLGGFVAGQHQSSTATGSEMADLLDLNFGLT HHHHHHHHHEEECCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA