| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74318078
Identifier: 74318078
GI number: 74318078
Start: 2150294
End: 2152018
Strand: Reverse
Name: 74318078
Synonym: Tbd_2060
Alternate gene names: NA
Gene position: 2152018-2150294 (Counterclockwise)
Preceding gene: 74318079
Following gene: 74318077
Centisome position: 73.96
GC content: 65.8
Gene sequence:
>1725_bases ATGGCTAAAACGCTCAACGTCGTGCTGTGCTGGCACATGCATCAGCCGTATTACCGCGAAGGGCTCTCCGGCGCCTATCA CCTGCCCTGGGTCTATCTGCACGGGATCAAGGACTACAGCGACATGGCTGCGCACCTCGAGCGCCATCCGAAGATGCGTG CCGTCGTGAATTTTGCCCCGGTCCTGCTCGAGCAGCTCGACGACTACGCGCACCAGCTCGAACGTCTGCTGAAGCACGGA ACGCCGACCCAGGACCGGATGCTGAACCTGCTCGCCGGCGTCGAGCCCGTCCCGACCGACCTCGACGGCCGGCTGCGCGT GGTCCAGGACTGTCAGCGCTGCCACGCACCACGCATGATCGACCCTTACCCGCCGTTCCGCGCCCTGCTCGACATGATCG GCGCGACCGACGCCGGGGACGGCGCGGCGTCCGGCCTGCACTGGCACCTCGGCTATCTCTCCGAGCAGTATTTTCTCGAT CTCTTGACCTGGTATCACCTCGCCTGGCTCGGGCATTCGCTGCGCGCGTTGCCGCTCGTGCAGCGCCTGATGGTCGAGGA AAGGGACTTCTCCGAAGCCGACCGCCGCGAACTCCTGCGCCTGATCCAGCACTGCATGGCCGGCCTGATTCCGCGCTACC GTGCGCTCGCGGAAAGAGGGCAGGTCGAACTGTCGATGACGCCCTATGGGCACCCGATCCTGCCCTTGCTCAATGACTTC GCCAACATGCGCGACGCGCTGCCAGACGCCCCCGCTCCCGAGGCAACGGCCTATCCGGGCGGCGCCGAGCGCGCGCAGTG GCACCTGCAGCGCGGTATCGAGGTGTTCGAGCACTATTTCGGCAGACGGCCTTCGGGCGTATGGCTGTCGGAAGGCGGGG TGAGCGAGGACGCGCTGGCGCAGCTCGACGAATTCGGCTTCACCTGGACCGCGTCGGGGGAGGGCGTGTGGCGCCATAGT TGCATCAAGTCGGGCGCGTCCGAAGAAGACATCCAGACCAAGCGCACGCTGTTCGCGCCGGCGCAGGTCGACGGCTTCAA GCCGCGCGTGTTTTTCCGCGACGATGGCTTGTCGGATCTGATCGGTTTCAAGTACAGCGACTGGCACGCCGACGATGCCA TCGGCGACTTCGTCCACCATCTCGAGAATATCGCGACCTACCTCGGCAAGGAGGCCAAGCATCATGTCGTGTCGATCATT CTCGACGGCGAAAACGCGTGGGAGTACTACCCGGACAACGGCCACCATTTTCTCGAAGGGCTCTATGGCGCGCTGTCGCG CCATCGCACGCTCGACGTCAGCACCTTCGCCGAGCAGGCCGAAGCGGCCACCAGCCAGCCGATGAAGCAGCTCGCCGCGG GCAGCTGGGTCTACGGCAGCTTCTCGACCTGGATCGGCTCGGAGGACAAGAACCGCGGCTGGGACTATCTCGTGGCGGCG AAGCGCGCCTACGACCACGCGGTGATGAACAACGATCTCGACGCCGAGGCGCTCGCGCTGGCGACGCGGCAACTCGCCGT GTGCGAAGGGTCGGACTGGTTCTGGTGGTTCGGCGACTACAACCCGGCGAGCAGCGTCAGCGACTTCGAACAGCTCTACC GCACGCAGCTGCGCGAACTGTATCGCCTGATCGGGGTGGCGGCGCCGTCCGAACTCGACCAGACGTTGTCGACCGGCGGC GGCTGGGCCGACAACGCCGGCACCATGCGCCGCAACGTCGGCTGA
Upstream 100 bases:
>100_bases GAAGACGCCAAGCGCTTTCACGTCACGCCCGAAGGCATCGTGCTGGTGACGCCCCGCATGCTCGGGCAGAACATCTACGC CCGCTGGGAAGACGAATACG
Downstream 100 bases:
>100_bases GCCCCAACCGGAGAACCGCTCCCATGAACTTTTCCGAGCGCCGCGCCGGCATCCTGCTGCATCCGACCTCGCTGCCTTCG GGCACCTTCGCGGACGCCGA
Product: glycosyl hydrolase family protein
Products: NA
Alternate protein names: Glycoside Hydrolase Family Protein; Amylopullulanase; Glycoside Hydrolase; Glycosy Hydrolase Family Protein; Pullulanase; Glycosyl Hydrolase Family; Family; Alpha-Amylase/Alpha-Mannosidase; Pullulanase Glycoside Hydrolase Family; Alpha-Dextran Endo-1 6-Alpha-Glucosidase; Alpha-Mannosidase; Amylopullulanase Related Protein
Number of amino acids: Translated: 574; Mature: 573
Protein sequence:
>574_residues MAKTLNVVLCWHMHQPYYREGLSGAYHLPWVYLHGIKDYSDMAAHLERHPKMRAVVNFAPVLLEQLDDYAHQLERLLKHG TPTQDRMLNLLAGVEPVPTDLDGRLRVVQDCQRCHAPRMIDPYPPFRALLDMIGATDAGDGAASGLHWHLGYLSEQYFLD LLTWYHLAWLGHSLRALPLVQRLMVEERDFSEADRRELLRLIQHCMAGLIPRYRALAERGQVELSMTPYGHPILPLLNDF ANMRDALPDAPAPEATAYPGGAERAQWHLQRGIEVFEHYFGRRPSGVWLSEGGVSEDALAQLDEFGFTWTASGEGVWRHS CIKSGASEEDIQTKRTLFAPAQVDGFKPRVFFRDDGLSDLIGFKYSDWHADDAIGDFVHHLENIATYLGKEAKHHVVSII LDGENAWEYYPDNGHHFLEGLYGALSRHRTLDVSTFAEQAEAATSQPMKQLAAGSWVYGSFSTWIGSEDKNRGWDYLVAA KRAYDHAVMNNDLDAEALALATRQLAVCEGSDWFWWFGDYNPASSVSDFEQLYRTQLRELYRLIGVAAPSELDQTLSTGG GWADNAGTMRRNVG
Sequences:
>Translated_574_residues MAKTLNVVLCWHMHQPYYREGLSGAYHLPWVYLHGIKDYSDMAAHLERHPKMRAVVNFAPVLLEQLDDYAHQLERLLKHG TPTQDRMLNLLAGVEPVPTDLDGRLRVVQDCQRCHAPRMIDPYPPFRALLDMIGATDAGDGAASGLHWHLGYLSEQYFLD LLTWYHLAWLGHSLRALPLVQRLMVEERDFSEADRRELLRLIQHCMAGLIPRYRALAERGQVELSMTPYGHPILPLLNDF ANMRDALPDAPAPEATAYPGGAERAQWHLQRGIEVFEHYFGRRPSGVWLSEGGVSEDALAQLDEFGFTWTASGEGVWRHS CIKSGASEEDIQTKRTLFAPAQVDGFKPRVFFRDDGLSDLIGFKYSDWHADDAIGDFVHHLENIATYLGKEAKHHVVSII LDGENAWEYYPDNGHHFLEGLYGALSRHRTLDVSTFAEQAEAATSQPMKQLAAGSWVYGSFSTWIGSEDKNRGWDYLVAA KRAYDHAVMNNDLDAEALALATRQLAVCEGSDWFWWFGDYNPASSVSDFEQLYRTQLRELYRLIGVAAPSELDQTLSTGG GWADNAGTMRRNVG >Mature_573_residues AKTLNVVLCWHMHQPYYREGLSGAYHLPWVYLHGIKDYSDMAAHLERHPKMRAVVNFAPVLLEQLDDYAHQLERLLKHGT PTQDRMLNLLAGVEPVPTDLDGRLRVVQDCQRCHAPRMIDPYPPFRALLDMIGATDAGDGAASGLHWHLGYLSEQYFLDL LTWYHLAWLGHSLRALPLVQRLMVEERDFSEADRRELLRLIQHCMAGLIPRYRALAERGQVELSMTPYGHPILPLLNDFA NMRDALPDAPAPEATAYPGGAERAQWHLQRGIEVFEHYFGRRPSGVWLSEGGVSEDALAQLDEFGFTWTASGEGVWRHSC IKSGASEEDIQTKRTLFAPAQVDGFKPRVFFRDDGLSDLIGFKYSDWHADDAIGDFVHHLENIATYLGKEAKHHVVSIIL DGENAWEYYPDNGHHFLEGLYGALSRHRTLDVSTFAEQAEAATSQPMKQLAAGSWVYGSFSTWIGSEDKNRGWDYLVAAK RAYDHAVMNNDLDAEALALATRQLAVCEGSDWFWWFGDYNPASSVSDFEQLYRTQLRELYRLIGVAAPSELDQTLSTGGG WADNAGTMRRNVG
Specific function: Unknown
COG id: COG1449
COG function: function code G; Alpha-amylase/alpha-mannosidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 64841; Mature: 64709
Theoretical pI: Translated: 5.59; Mature: 5.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKTLNVVLCWHMHQPYYREGLSGAYHLPWVYLHGIKDYSDMAAHLERHPKMRAVVNFAP CCCCEEEEEEEECCCHHHHHCCCCCEECCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHH VLLEQLDDYAHQLERLLKHGTPTQDRMLNLLAGVEPVPTDLDGRLRVVQDCQRCHAPRMI HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCC DPYPPFRALLDMIGATDAGDGAASGLHWHLGYLSEQYFLDLLTWYHLAWLGHSLRALPLV CCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRLMVEERDFSEADRRELLRLIQHCMAGLIPRYRALAERGQVELSMTPYGHPILPLLNDF HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH ANMRDALPDAPAPEATAYPGGAERAQWHLQRGIEVFEHYFGRRPSGVWLSEGGVSEDALA HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHH QLDEFGFTWTASGEGVWRHSCIKSGASEEDIQTKRTLFAPAQVDGFKPRVFFRDDGLSDL HHHHCCCEEECCCCCHHHHHHHHCCCCHHHHHHHHHEECCCCCCCCCCEEEECCCCHHHH IGFKYSDWHADDAIGDFVHHLENIATYLGKEAKHHVVSIILDGENAWEYYPDNGHHFLEG HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHCCEEEEEEECCCCCCCCCCCCCHHHHHH LYGALSRHRTLDVSTFAEQAEAATSQPMKQLAAGSWVYGSFSTWIGSEDKNRGWDYLVAA HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHCCCCCCCCCCHHHHHH KRAYDHAVMNNDLDAEALALATRQLAVCEGSDWFWWFGDYNPASSVSDFEQLYRTQLREL HHHHHHHHHCCCCCHHHHHHHHHHHHEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHH YRLIGVAAPSELDQTLSTGGGWADNAGTMRRNVG HHHHHCCCCHHHHHHHHCCCCCCCCCCCHHCCCC >Mature Secondary Structure AKTLNVVLCWHMHQPYYREGLSGAYHLPWVYLHGIKDYSDMAAHLERHPKMRAVVNFAP CCCEEEEEEEECCCHHHHHCCCCCEECCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHH VLLEQLDDYAHQLERLLKHGTPTQDRMLNLLAGVEPVPTDLDGRLRVVQDCQRCHAPRMI HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCC DPYPPFRALLDMIGATDAGDGAASGLHWHLGYLSEQYFLDLLTWYHLAWLGHSLRALPLV CCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QRLMVEERDFSEADRRELLRLIQHCMAGLIPRYRALAERGQVELSMTPYGHPILPLLNDF HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH ANMRDALPDAPAPEATAYPGGAERAQWHLQRGIEVFEHYFGRRPSGVWLSEGGVSEDALA HHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCHHHHH QLDEFGFTWTASGEGVWRHSCIKSGASEEDIQTKRTLFAPAQVDGFKPRVFFRDDGLSDL HHHHCCCEEECCCCCHHHHHHHHCCCCHHHHHHHHHEECCCCCCCCCCEEEECCCCHHHH IGFKYSDWHADDAIGDFVHHLENIATYLGKEAKHHVVSIILDGENAWEYYPDNGHHFLEG HCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHCCEEEEEEECCCCCCCCCCCCCHHHHHH LYGALSRHRTLDVSTFAEQAEAATSQPMKQLAAGSWVYGSFSTWIGSEDKNRGWDYLVAA HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHCCCCCCCCCCHHHHHH KRAYDHAVMNNDLDAEALALATRQLAVCEGSDWFWWFGDYNPASSVSDFEQLYRTQLREL HHHHHHHHHCCCCCHHHHHHHHHHHHEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHH YRLIGVAAPSELDQTLSTGGGWADNAGTMRRNVG HHHHHCCCCHHHHHHHHCCCCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA