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The map label for this gene is ydaM [H]

Identifier: 74317971

GI number: 74317971

Start: 2046487

End: 2047851

Strand: Reverse

Name: ydaM [H]

Synonym: Tbd_1953

Alternate gene names: 74317971

Gene position: 2047851-2046487 (Counterclockwise)

Preceding gene: 74317972

Following gene: 74317969

Centisome position: 70.38

GC content: 65.42

Gene sequence:

>1365_bases
ATGTTTTTTCCCCCGATAGCCGAATTGGCGACGACCGACATCGTGAGCGTGTCGTCGGAGGTCAGCGTGAGCGAGGCGTT
GCGGCAGATGGCTGCGCGGAACGTCCGCAACATCGTGGTGCGGCGCGGCGAGGGGAGGTATGGGCTACTGACCGCGCCGG
ACGTCGTGAAACTGCGTTTTGGCGAGAAGGGCCTCGGCATCGCGGTCGGAAACGTCGAGTGCGCGGAGCTCCCCGTCATC
CCGCAGGACTACAACATCCTCGACATGTTCGACCAGCTCGACGGCTCACAGGGATACGCGGCGGTCGTCGACGGGTCGGG
CGACCTGTACGGCATCGTTTCCAATTCGGACATCCTGGGCAGCCTCGATCCGCAGCTCATGCTGCAGCGACAGTGTCTGG
GCGATCTGCTGAAGCGTCACGAGATCAAGACCGTGCACGCGGCGACGCCTCTCGCGGACGTGCTCGTGCAACTGGTCCAG
GCCGACGATGCGGTGATCGTGATCGATCAGGAGGCAGAGATTGGCATCCTCACGACCCAGGACGCGGTCCGTATCCTGCA
GAGCGACGCGCCCTTGGCCGACCCGGTCGCGGCGCACATGTCCGCCCCGCTGCACACGGTTGGCCACGGCCTCACGGTGA
GCGAGGCGATCGCGACGCTGCACGAGAAGCATTTCAAGCGCCTCGTCGTCAGGGACAGCGACAGCGGAAGAATCATCGGC
CTCATCACGCAGAAGGACTTGATCGGCGTCGCGTATAGCCGCTGGGCGGACTTGATGCGACACCACGCACTCGAGTTGCA
GGAGGTCATCGACATCCTCGAGCGCAAGGCCGCGCGGCTCGAGCGGATGGCGACGACGGATGCCTTGACCGGCATTGCCA
ATCGGGCCCGTTTCGAAGAATTGCTGCAATTGGAGCAACAGCACTGCCTGCGCGTGCCGGGTCAGCCTTTCTCCGTCATC
CTGTTCGATATCGATCGCTTCAAGCAGATCAACGATACCTGGGGACACGGTCAGGGGGACGACGTTCTCAAAACCATCGC
ACGCGAGGTACAGGGCCTGCTGCGCACGGCCGATACGCTCGCGCGCTGGGGGGGCGAGGAATTCGCCGTCCTGCTGCCGC
GGACCGATCTCGATGCGGCTCGCGTGGTCGCCGACAAGATTTGCGGTGCGCTCGGGCAGGTACCGCTCGAGCGCGTCGGA
ACCGTGACAGCGAGCTTCGGTGTGGCCACGATCGAGTCGGGAGAGCCGGGCGCGGCCCTGCTCGCGCGCGCGGACGGCGC
GCTTTACGAGGCCAAGCGCCGAGGCCGCAATCAGGTGGTCCAGGCGCGCGCGACGGATGAGCGCGTGGCCGATCCGGGCA
GATGA

Upstream 100 bases:

>100_bases
CGGTTCCGGCCGACCCGAAGCGGAGCTGGGCCTTGTTGAGCATCGGACGGTCAGGATGGCGTTCGCGCCCCGGCCGTTTA
CCCCTGACAGGAACCGGCAC

Downstream 100 bases:

>100_bases
CGCAGGCGGACCGTCCCCGCCATGGAAAGCGCGGCCCAGCGGCTTCGTGCGCGTCCGCGCGCACAGTCGCTCAGATCAGA
TTCTTGCGCGTCAGCTCGCC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 454; Mature: 454

Protein sequence:

>454_residues
MFFPPIAELATTDIVSVSSEVSVSEALRQMAARNVRNIVVRRGEGRYGLLTAPDVVKLRFGEKGLGIAVGNVECAELPVI
PQDYNILDMFDQLDGSQGYAAVVDGSGDLYGIVSNSDILGSLDPQLMLQRQCLGDLLKRHEIKTVHAATPLADVLVQLVQ
ADDAVIVIDQEAEIGILTTQDAVRILQSDAPLADPVAAHMSAPLHTVGHGLTVSEAIATLHEKHFKRLVVRDSDSGRIIG
LITQKDLIGVAYSRWADLMRHHALELQEVIDILERKAARLERMATTDALTGIANRARFEELLQLEQQHCLRVPGQPFSVI
LFDIDRFKQINDTWGHGQGDDVLKTIAREVQGLLRTADTLARWGGEEFAVLLPRTDLDAARVVADKICGALGQVPLERVG
TVTASFGVATIESGEPGAALLARADGALYEAKRRGRNQVVQARATDERVADPGR

Sequences:

>Translated_454_residues
MFFPPIAELATTDIVSVSSEVSVSEALRQMAARNVRNIVVRRGEGRYGLLTAPDVVKLRFGEKGLGIAVGNVECAELPVI
PQDYNILDMFDQLDGSQGYAAVVDGSGDLYGIVSNSDILGSLDPQLMLQRQCLGDLLKRHEIKTVHAATPLADVLVQLVQ
ADDAVIVIDQEAEIGILTTQDAVRILQSDAPLADPVAAHMSAPLHTVGHGLTVSEAIATLHEKHFKRLVVRDSDSGRIIG
LITQKDLIGVAYSRWADLMRHHALELQEVIDILERKAARLERMATTDALTGIANRARFEELLQLEQQHCLRVPGQPFSVI
LFDIDRFKQINDTWGHGQGDDVLKTIAREVQGLLRTADTLARWGGEEFAVLLPRTDLDAARVVADKICGALGQVPLERVG
TVTASFGVATIESGEPGAALLARADGALYEAKRRGRNQVVQARATDERVADPGR
>Mature_454_residues
MFFPPIAELATTDIVSVSSEVSVSEALRQMAARNVRNIVVRRGEGRYGLLTAPDVVKLRFGEKGLGIAVGNVECAELPVI
PQDYNILDMFDQLDGSQGYAAVVDGSGDLYGIVSNSDILGSLDPQLMLQRQCLGDLLKRHEIKTVHAATPLADVLVQLVQ
ADDAVIVIDQEAEIGILTTQDAVRILQSDAPLADPVAAHMSAPLHTVGHGLTVSEAIATLHEKHFKRLVVRDSDSGRIIG
LITQKDLIGVAYSRWADLMRHHALELQEVIDILERKAARLERMATTDALTGIANRARFEELLQLEQQHCLRVPGQPFSVI
LFDIDRFKQINDTWGHGQGDDVLKTIAREVQGLLRTADTLARWGGEEFAVLLPRTDLDAARVVADKICGALGQVPLERVG
TVTASFGVATIESGEPGAALLARADGALYEAKRRGRNQVVQARATDERVADPGR

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=43.1818181818182, Blast_Score=134, Evalue=9e-33,
Organism=Escherichia coli, GI1788381, Length=197, Percent_Identity=38.0710659898477, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI1786584, Length=163, Percent_Identity=37.4233128834356, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=33.7423312883436, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=38.5964912280702, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1787541, Length=177, Percent_Identity=33.8983050847458, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87082007, Length=175, Percent_Identity=40, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=33.9506172839506, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1787802, Length=182, Percent_Identity=32.4175824175824, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788956, Length=188, Percent_Identity=36.1702127659575, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1788085, Length=176, Percent_Identity=32.9545454545455, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787056, Length=168, Percent_Identity=29.1666666666667, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87081974, Length=191, Percent_Identity=26.1780104712042, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 49293; Mature: 49293

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFPPIAELATTDIVSVSSEVSVSEALRQMAARNVRNIVVRRGEGRYGLLTAPDVVKLRF
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCEEEEEE
GEKGLGIAVGNVECAELPVIPQDYNILDMFDQLDGSQGYAAVVDGSGDLYGIVSNSDILG
CCCCCEEEECCCCHHCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCC
SLDPQLMLQRQCLGDLLKRHEIKTVHAATPLADVLVQLVQADDAVIVIDQEAEIGILTTQ
CCCHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHCCCCEEEEEECCCCEEEEECH
DAVRILQSDAPLADPVAAHMSAPLHTVGHGLTVSEAIATLHEKHFKRLVVRDSDSGRIIG
HHHHHHHCCCCCCCHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHEEEEECCCCCEEE
LITQKDLIGVAYSRWADLMRHHALELQEVIDILERKAARLERMATTDALTGIANRARFEE
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLQLEQQHCLRVPGQPFSVILFDIDRFKQINDTWGHGQGDDVLKTIAREVQGLLRTADTL
HHHHHHHHHHCCCCCCCEEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ARWGGEEFAVLLPRTDLDAARVVADKICGALGQVPLERVGTVTASFGVATIESGEPGAAL
HHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEECCCCCCCEE
LARADGALYEAKRRGRNQVVQARATDERVADPGR
EECCCCHHHHHHHCCHHHEEEHHCCHHCCCCCCC
>Mature Secondary Structure
MFFPPIAELATTDIVSVSSEVSVSEALRQMAARNVRNIVVRRGEGRYGLLTAPDVVKLRF
CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCCEEEEECCCEEEEEE
GEKGLGIAVGNVECAELPVIPQDYNILDMFDQLDGSQGYAAVVDGSGDLYGIVSNSDILG
CCCCCEEEECCCCHHCCCCCCCCCCHHHHHHHCCCCCCEEEEEECCCCEEEEEECCCCCC
SLDPQLMLQRQCLGDLLKRHEIKTVHAATPLADVLVQLVQADDAVIVIDQEAEIGILTTQ
CCCHHHHHHHHHHHHHHHHHHCCHHHHCCCHHHHHHHHHCCCCEEEEEECCCCEEEEECH
DAVRILQSDAPLADPVAAHMSAPLHTVGHGLTVSEAIATLHEKHFKRLVVRDSDSGRIIG
HHHHHHHCCCCCCCHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHEEEEECCCCCEEE
LITQKDLIGVAYSRWADLMRHHALELQEVIDILERKAARLERMATTDALTGIANRARFEE
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLQLEQQHCLRVPGQPFSVILFDIDRFKQINDTWGHGQGDDVLKTIAREVQGLLRTADTL
HHHHHHHHHHCCCCCCCEEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
ARWGGEEFAVLLPRTDLDAARVVADKICGALGQVPLERVGTVTASFGVATIESGEPGAAL
HHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEECCCCCCCEE
LARADGALYEAKRRGRNQVVQARATDERVADPGR
EECCCCHHHHHHHCCHHHEEEHHCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]