| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317948
Identifier: 74317948
GI number: 74317948
Start: 2025925
End: 2026623
Strand: Direct
Name: 74317948
Synonym: Tbd_1930
Alternate gene names: NA
Gene position: 2025925-2026623 (Clockwise)
Preceding gene: 74317946
Following gene: 74317951
Centisome position: 69.62
GC content: 65.81
Gene sequence:
>699_bases ATGGCCGCCGCTCGCGGACGCGGAATCCGGCCTGCTCAAGGAGAAAACACGGTCTTGCCCATGCCACCCGACGCCCCGCT CGACGTGCACCGTCCGCCGGCCGACCTCAGGGATCGCATCGCACTCGGCTTCGTGAAGCTCGTAAAAGCCGCGGCCGACG CGTTCTTCGGGCGACGCTACGGCCATCGCGCGGTCGTGCTCGAAACGATCGCCGCCGTCCCGGGAATGGTCGGCGCGACG CTCCAGCATCTGCGCGCGCTGCGGCGCATGCAGGGCGACCGCGGATGGATTCGCACGCTGCTCGAAGAAGCCGAGAACGA ACGCATGCATCTGATGACCTTCATCCACGTCGCGCAGCCCACGCAGTTCGAACGGCTTCTGGTCGTGCTCGCGCAGGCCT TCTTCTACAACCTGTATTTTTTCGTTTACCTCGCTTCGCCGAAGACCGCGCACCGCATCACCGGCTATCTCGAGGAAGAA GCGGTCCACAGCTATACCGAGTATCTCGCCCGCGTCGACGGCGGCGCGTGCACAAATGTCGCAGCGCCGGGCATCGCGAT CGAATACTGGGCGCTTCCCGCCGACGCGCGCCTGCGCGAGGTGATCGTTGCGGTCCGCGATGACGAGATACGCCACCGCG AAGTGAATCACGCCTACGCCGACACGCTCACCCGATCGTCGGCGTCGGGGCCGGAATGA
Upstream 100 bases:
>100_bases ACGCGGTCCGCCCGCCCCCGCCCGCGGCCCGTCCCGTTCCCACCTCGCCGCATCGAACCACCGCGGAACGATCGGCCTTG CCCCGGGGTCGGACTTGCGA
Downstream 100 bases:
>100_bases ACGAAGGCGGGCGGCCTTTCGTACCGAGGACTGCGGAAAATCGGGAACGGGGGTGATCGAAGCGCGCCGGGCTCAGACGG CCGCCTGGCACCACGGCATG
Product: putative oxidase
Products: NA
Alternate protein names: AlteRNAtive Oxidase Superfamily; Oxidase
Number of amino acids: Translated: 232; Mature: 231
Protein sequence:
>232_residues MAAARGRGIRPAQGENTVLPMPPDAPLDVHRPPADLRDRIALGFVKLVKAAADAFFGRRYGHRAVVLETIAAVPGMVGAT LQHLRALRRMQGDRGWIRTLLEEAENERMHLMTFIHVAQPTQFERLLVVLAQAFFYNLYFFVYLASPKTAHRITGYLEEE AVHSYTEYLARVDGGACTNVAAPGIAIEYWALPADARLREVIVAVRDDEIRHREVNHAYADTLTRSSASGPE
Sequences:
>Translated_232_residues MAAARGRGIRPAQGENTVLPMPPDAPLDVHRPPADLRDRIALGFVKLVKAAADAFFGRRYGHRAVVLETIAAVPGMVGAT LQHLRALRRMQGDRGWIRTLLEEAENERMHLMTFIHVAQPTQFERLLVVLAQAFFYNLYFFVYLASPKTAHRITGYLEEE AVHSYTEYLARVDGGACTNVAAPGIAIEYWALPADARLREVIVAVRDDEIRHREVNHAYADTLTRSSASGPE >Mature_231_residues AAARGRGIRPAQGENTVLPMPPDAPLDVHRPPADLRDRIALGFVKLVKAAADAFFGRRYGHRAVVLETIAAVPGMVGATL QHLRALRRMQGDRGWIRTLLEEAENERMHLMTFIHVAQPTQFERLLVVLAQAFFYNLYFFVYLASPKTAHRITGYLEEEA VHSYTEYLARVDGGACTNVAAPGIAIEYWALPADARLREVIVAVRDDEIRHREVNHAYADTLTRSSASGPE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25872; Mature: 25741
Theoretical pI: Translated: 7.85; Mature: 7.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAARGRGIRPAQGENTVLPMPPDAPLDVHRPPADLRDRIALGFVKLVKAAADAFFGRRY CCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC GHRAVVLETIAAVPGMVGATLQHLRALRRMQGDRGWIRTLLEEAENERMHLMTFIHVAQP CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC TQFERLLVVLAQAFFYNLYFFVYLASPKTAHRITGYLEEEAVHSYTEYLARVDGGACTNV CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC AAPGIAIEYWALPADARLREVIVAVRDDEIRHREVNHAYADTLTRSSASGPE CCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure AAARGRGIRPAQGENTVLPMPPDAPLDVHRPPADLRDRIALGFVKLVKAAADAFFGRRY CCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC GHRAVVLETIAAVPGMVGATLQHLRALRRMQGDRGWIRTLLEEAENERMHLMTFIHVAQP CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCCC TQFERLLVVLAQAFFYNLYFFVYLASPKTAHRITGYLEEEAVHSYTEYLARVDGGACTNV CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC AAPGIAIEYWALPADARLREVIVAVRDDEIRHREVNHAYADTLTRSSASGPE CCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA