| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is ybaN [H]
Identifier: 74317942
GI number: 74317942
Start: 2021405
End: 2021848
Strand: Reverse
Name: ybaN [H]
Synonym: Tbd_1924
Alternate gene names: 74317942
Gene position: 2021848-2021405 (Counterclockwise)
Preceding gene: 74317943
Following gene: 74317941
Centisome position: 69.48
GC content: 69.14
Gene sequence:
>444_bases TTGAGCAGGGAACACGACGAGATCGACCCGCATCGGCACCCCATGCCGGTCCGCCTCGTGTTCGCGGTCCTCGGAACGGT GTTCGTGCTGCTTGGCCTGGCCGGGATTTTCTTTCCCGTTTTACCGACGACTCCCTTCCTGCTGCTCGCGGCGGCCTGCT ACGCGCGCGCGTCGCGCCGTGTCTTCGCCTGGCTGCTCGCGCATCGGCATTTCGGCCCGCTGATCCGCGAATGGCGCGAA CACCGCAGCATGCCCTACCGCGCCAAGCGCAGGGCCTTGTGGCTGATCGCGCTGAGCTTCGCGATCTCGATCGGCTTCGT CGTGCCCGGCTGGCCGGCCAAGCTTGCGCTGGGCGTGGGCGGGCTGCTGCTGATGACGTGGATCGCGCGCATCCCGTCGC GCGACGCGCCGCGGCGAGCGGGGGCGGACGCACGGCAGAATTGA
Upstream 100 bases:
>100_bases CGCGGCAAGGGCGAGTTTTTCGTCGCCGGCGAGACGCTGCGCCTGCGCTCGGCGATGAAATGAGACGCCCGCTTCCGGGC TCGCGAGGGGAGACAGGCCA
Downstream 100 bases:
>100_bases GCTGCGGCCGCGGCAGCGCCTCGCCACTCGGGGATAATGCGCCCGCATGAATGCCGTCCCCTACTGGCGCCTGTCCGGTT TCTACTTCTTCTACTTCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 147; Mature: 146
Protein sequence:
>147_residues MSREHDEIDPHRHPMPVRLVFAVLGTVFVLLGLAGIFFPVLPTTPFLLLAAACYARASRRVFAWLLAHRHFGPLIREWRE HRSMPYRAKRRALWLIALSFAISIGFVVPGWPAKLALGVGGLLLMTWIARIPSRDAPRRAGADARQN
Sequences:
>Translated_147_residues MSREHDEIDPHRHPMPVRLVFAVLGTVFVLLGLAGIFFPVLPTTPFLLLAAACYARASRRVFAWLLAHRHFGPLIREWRE HRSMPYRAKRRALWLIALSFAISIGFVVPGWPAKLALGVGGLLLMTWIARIPSRDAPRRAGADARQN >Mature_146_residues SREHDEIDPHRHPMPVRLVFAVLGTVFVLLGLAGIFFPVLPTTPFLLLAAACYARASRRVFAWLLAHRHFGPLIREWREH RSMPYRAKRRALWLIALSFAISIGFVVPGWPAKLALGVGGLLLMTWIARIPSRDAPRRAGADARQN
Specific function: Unknown
COG id: COG2832
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786674, Length=122, Percent_Identity=44.2622950819672, Blast_Score=92, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007401 [H]
Pfam domain/function: PF04304 DUF454 [H]
EC number: NA
Molecular weight: Translated: 16582; Mature: 16451
Theoretical pI: Translated: 12.21; Mature: 12.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSREHDEIDPHRHPMPVRLVFAVLGTVFVLLGLAGIFFPVLPTTPFLLLAAACYARASRR CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH VFAWLLAHRHFGPLIREWREHRSMPYRAKRRALWLIALSFAISIGFVVPGWPAKLALGVG HHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH GLLLMTWIARIPSRDAPRRAGADARQN HHHHHHHHHHCCCCCCCCCCCCCCCCC >Mature Secondary Structure SREHDEIDPHRHPMPVRLVFAVLGTVFVLLGLAGIFFPVLPTTPFLLLAAACYARASRR CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH VFAWLLAHRHFGPLIREWREHRSMPYRAKRRALWLIALSFAISIGFVVPGWPAKLALGVG HHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH GLLLMTWIARIPSRDAPRRAGADARQN HHHHHHHHHHCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]