| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317936
Identifier: 74317936
GI number: 74317936
Start: 2012955
End: 2015441
Strand: Reverse
Name: 74317936
Synonym: Tbd_1918
Alternate gene names: NA
Gene position: 2015441-2012955 (Counterclockwise)
Preceding gene: 74317937
Following gene: 74317935
Centisome position: 69.26
GC content: 69.24
Gene sequence:
>2487_bases ATGAAATTGAAGCGCTTCACCACCCAGCTGGCCGCCGCCGGGCTTGTCGCCCTGCCGTTGATGGCGCACGCCGCCGGGTT GGGCAAGCTCTCGGTCACCTCGGCGCTCGGTCAGCCTCTGGCAGCCGAGATCGAGCTGTTCGCCGCCGACAAGGCCGAGC TCGACAGCATCTCCGCCACCCTTGCATCGGATCAGGCTTACCGCGATGCACGCGTCGATTTCTCCCCGGTGTTGTCGACA CTGCGTTTCTCGGTCGAGAAGAAGCCCGGCGGCAAGGCCGTGCTCAAAGTCACGTCGAGCCGACCGGTCAACGACCCGTT CATCGACATGCTGGTCGAACTGAGCTGGGCGTCCGGCCGTCTGGTGCGCGAATACACGATGCTCCTCGACCCGCCCGGCA TGGCGAGCCCGCAGACCGTCGCGCCCGTGGCTGTCACGCCGGCCCAATCTCCGGCGCGCGCGGCCCCGGCTCCGGTCGCG CCGCCCGCTGCGCAACCGCCCGCCGCGGCTGACGCCCCCGTTTCCGAGCCGCCGGCGGCGACGGCCACCGCGACGCCCGC ACCGAAGTCGACGGCACCGCAGGACACCGCACCCACGCGCGTCAAGGTCAAGCGCGGCGACACACTGATCGGCATCGCCC AGCGCGTGCGCCCCGACAGCGTCAGCCTCGAACAGACGCTCGTCGGCCTCTATCGCGAGAACACGCACGCTTTCGTCGGC AACATGAACCGCCTCAAGGCGGGCCGCACCTTGGCCGTACCGACGGCAGAGGCCGTTGCGGCGATTCCGCAGAAAGAAGC AGTGCGTGAACTCAAGCTGCAGGCTGCCGACTGGAACGCCTACCGTCAGAAACTCGCGGCTTCCGTGAGCGGAACCGCCC CGACCGAGCCCGCGGCAGGTCAGGCGAGCAGCGGCAAGGTCACGTCCAAAGTCGAAGACAAGGCGGCGGCCGCGGCGGCA GACAAGAAAGACGTGCTCAAGCTGTCCAAGGTCGCGCCGGCCGATAGCGCTGCGAACAAGGGCGAGGCCAGTGCGCTGCA GGAGAAGCTCCGCGCCCAGGAAGAGGACGCGATCGCGCGACAGAAGGCGCTCGCAGAATCCGACCAGCGCGTCGCGCTGC TGGAAAAGCAGATTCAGGACATGCAGAAGCTGGCCGACATGAAAGCGCAGGCCCAAGCACCGGCCGAGCCCGAGCCGAGC GCCGCGTCCGCCGCTACCCCTGAGCCGGCCGCTGCGCCCGCAGAGCCGGCGAAGCCAGCGCCGGTTGCTCCTGCCGTCGC CGCGCCACCCGCGGCACCGGCGTCCGCCGAAAACTGGTTCGAGCCGCTGCTCGCCAACCCGCTTTACTGGGGCGGTAGCC TCGCCGCGGTGGGCCTGGGTGGCGTCCTGTGGTGGATGATGGCCGGCGGACGGCGGCGCAAGACCGGCACGACGGGGCTC GAAGACAGCCTCATCACCGGCGGCGACGTGCGGCCCGACACCGTGCTCGGTTCTGCCGCGGGCGGCAGCGTCAATACCGG TGACACCTCCTTCCTCACCGACTTCAGCCAGGCCGGGCTCGGCACGATCGACACCCACGACGTCGACCCGATCGCCGAAG CCGAGGTCTACATGGCGTACGGCCGTGACGCGCAGGCCGAGGAAATCCTCAAGGAAGCGATCGCCAAGAACCCCGATCGC CACGAGGTGCGGGTGAAACTGCTCGAAATCTATGCCGCGCGCCGCAATACCGCCGCGTTCGAGGCAGCCGCGGGCGAGCT CTACGCGGCGCTCGGCAGCAAGTCCAGCCCGCTCTGGGACAAGGCCTGCGAGATGGGACGCGGGATCGACCCGACTAACC CTCTGTACGGGGGTGTCCAGTCGAGCGCGGCGCCTGCAGCCGCCGCGGCGACATTCGCTGCGACGCCGGCGGTCGCCGGC GGGGCGGTGGGCTTCGATACCGAGCGCGTCGTCGATGCGGGAAATGCAATCTCCGCGGAAACGGCGCACTCCACCGCGGT GGAGACCGAGCGCCCGCAGGCCGTCGACGCGGCCGTGGCGGCCGTGGCAAGTCCGGTGCTCGACTTCGAGTCGGCCGGGC AGGCGCCCGCATTCGAGCGCCGCGCGGGGGGCGGCGGCGCCGCGGTTACGGCGGACGCTGACGAGACCGCGGCGGACGAC GGCCTCCTCGACCTCGAGGGGCTGAGCTTCGATCTGCCCGCGCTGGATACGTCCGCATCGACGGATGACACGCTCAACGT CGGCCTCGGTCTCGAAGACGACAAGCCGGCCGACGGTAAATTCGATTTCAGCGGCCTCGATCTCGATCTCGGCGATGGCA GCAACGACGTCGAGCTCGACGAAGTCGGCACCAAGCTCGACCTCGCACGCGCCTATGTGGAAATGGGCGACAAGGAAGGG GCGCGCGAAATCCTCAACGAAGTGGTGACCGAAGGCAACGACAGCCAGAAGGCCGACGCGAAAGGCATGCTGGGCGCACT TGGCTAA
Upstream 100 bases:
>100_bases AGGCGCGGTGTCCGCTAAAGATTGGGCGTGACGAGCCGTCAATGATGGCGTCAAGCATTCAACAGCCCCGCTCGAGCGGG GGTGAACAGGAGAGAAACGG
Downstream 100 bases:
>100_bases GTCGTTTCATCCCGTCGCCCGCATCCTTCTCTGGTGCGGGTGGGCGGTTGCGGTGGAGCACGCCGCAACCTCCGTGCTGG CACTCATGGCCGTCGCAACC
Product: hypothetical protein
Products: NA
Alternate protein names: FimV Protein; Tfp Pilus Assembly Protein FimV-Like Protein; FimV N-Terminal Domain Protein; LysM Domain Protein; Type 4 Pilus Biogenesis; LysM Domain-Containing Protein; Motility Protein FimV; Lysm Domain; Transmembrane Tfp Pilus Assembly FimV Protein; TPR Repeat-Containing Protein; FimV C-Terminal Domain-Containing Protein; Protein Containing Tetratricopeptide Repeats; Tfp Pilus Assembly Protein FimV; Tfp Pilus Assembly Protein FimV-Like; Transmembrane Tfp Pilus Assembly Protein FimV; FimV N-Terminal Domain; FimV N-Terminal Domain-Containing Protein; FimV Type IV Pilus Assembly Protein
Number of amino acids: Translated: 828; Mature: 828
Protein sequence:
>828_residues MKLKRFTTQLAAAGLVALPLMAHAAGLGKLSVTSALGQPLAAEIELFAADKAELDSISATLASDQAYRDARVDFSPVLST LRFSVEKKPGGKAVLKVTSSRPVNDPFIDMLVELSWASGRLVREYTMLLDPPGMASPQTVAPVAVTPAQSPARAAPAPVA PPAAQPPAAADAPVSEPPAATATATPAPKSTAPQDTAPTRVKVKRGDTLIGIAQRVRPDSVSLEQTLVGLYRENTHAFVG NMNRLKAGRTLAVPTAEAVAAIPQKEAVRELKLQAADWNAYRQKLAASVSGTAPTEPAAGQASSGKVTSKVEDKAAAAAA DKKDVLKLSKVAPADSAANKGEASALQEKLRAQEEDAIARQKALAESDQRVALLEKQIQDMQKLADMKAQAQAPAEPEPS AASAATPEPAAAPAEPAKPAPVAPAVAAPPAAPASAENWFEPLLANPLYWGGSLAAVGLGGVLWWMMAGGRRRKTGTTGL EDSLITGGDVRPDTVLGSAAGGSVNTGDTSFLTDFSQAGLGTIDTHDVDPIAEAEVYMAYGRDAQAEEILKEAIAKNPDR HEVRVKLLEIYAARRNTAAFEAAAGELYAALGSKSSPLWDKACEMGRGIDPTNPLYGGVQSSAAPAAAAATFAATPAVAG GAVGFDTERVVDAGNAISAETAHSTAVETERPQAVDAAVAAVASPVLDFESAGQAPAFERRAGGGGAAVTADADETAADD GLLDLEGLSFDLPALDTSASTDDTLNVGLGLEDDKPADGKFDFSGLDLDLGDGSNDVELDEVGTKLDLARAYVEMGDKEG AREILNEVVTEGNDSQKADAKGMLGALG
Sequences:
>Translated_828_residues MKLKRFTTQLAAAGLVALPLMAHAAGLGKLSVTSALGQPLAAEIELFAADKAELDSISATLASDQAYRDARVDFSPVLST LRFSVEKKPGGKAVLKVTSSRPVNDPFIDMLVELSWASGRLVREYTMLLDPPGMASPQTVAPVAVTPAQSPARAAPAPVA PPAAQPPAAADAPVSEPPAATATATPAPKSTAPQDTAPTRVKVKRGDTLIGIAQRVRPDSVSLEQTLVGLYRENTHAFVG NMNRLKAGRTLAVPTAEAVAAIPQKEAVRELKLQAADWNAYRQKLAASVSGTAPTEPAAGQASSGKVTSKVEDKAAAAAA DKKDVLKLSKVAPADSAANKGEASALQEKLRAQEEDAIARQKALAESDQRVALLEKQIQDMQKLADMKAQAQAPAEPEPS AASAATPEPAAAPAEPAKPAPVAPAVAAPPAAPASAENWFEPLLANPLYWGGSLAAVGLGGVLWWMMAGGRRRKTGTTGL EDSLITGGDVRPDTVLGSAAGGSVNTGDTSFLTDFSQAGLGTIDTHDVDPIAEAEVYMAYGRDAQAEEILKEAIAKNPDR HEVRVKLLEIYAARRNTAAFEAAAGELYAALGSKSSPLWDKACEMGRGIDPTNPLYGGVQSSAAPAAAAATFAATPAVAG GAVGFDTERVVDAGNAISAETAHSTAVETERPQAVDAAVAAVASPVLDFESAGQAPAFERRAGGGGAAVTADADETAADD GLLDLEGLSFDLPALDTSASTDDTLNVGLGLEDDKPADGKFDFSGLDLDLGDGSNDVELDEVGTKLDLARAYVEMGDKEG AREILNEVVTEGNDSQKADAKGMLGALG >Mature_828_residues MKLKRFTTQLAAAGLVALPLMAHAAGLGKLSVTSALGQPLAAEIELFAADKAELDSISATLASDQAYRDARVDFSPVLST LRFSVEKKPGGKAVLKVTSSRPVNDPFIDMLVELSWASGRLVREYTMLLDPPGMASPQTVAPVAVTPAQSPARAAPAPVA PPAAQPPAAADAPVSEPPAATATATPAPKSTAPQDTAPTRVKVKRGDTLIGIAQRVRPDSVSLEQTLVGLYRENTHAFVG NMNRLKAGRTLAVPTAEAVAAIPQKEAVRELKLQAADWNAYRQKLAASVSGTAPTEPAAGQASSGKVTSKVEDKAAAAAA DKKDVLKLSKVAPADSAANKGEASALQEKLRAQEEDAIARQKALAESDQRVALLEKQIQDMQKLADMKAQAQAPAEPEPS AASAATPEPAAAPAEPAKPAPVAPAVAAPPAAPASAENWFEPLLANPLYWGGSLAAVGLGGVLWWMMAGGRRRKTGTTGL EDSLITGGDVRPDTVLGSAAGGSVNTGDTSFLTDFSQAGLGTIDTHDVDPIAEAEVYMAYGRDAQAEEILKEAIAKNPDR HEVRVKLLEIYAARRNTAAFEAAAGELYAALGSKSSPLWDKACEMGRGIDPTNPLYGGVQSSAAPAAAAATFAATPAVAG GAVGFDTERVVDAGNAISAETAHSTAVETERPQAVDAAVAAVASPVLDFESAGQAPAFERRAGGGGAAVTADADETAADD GLLDLEGLSFDLPALDTSASTDDTLNVGLGLEDDKPADGKFDFSGLDLDLGDGSNDVELDEVGTKLDLARAYVEMGDKEG AREILNEVVTEGNDSQKADAKGMLGALG
Specific function: Unknown
COG id: COG3170
COG function: function code NU; Tfp pilus assembly protein FimV
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84963; Mature: 84963
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.1 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLKRFTTQLAAAGLVALPLMAHAAGLGKLSVTSALGQPLAAEIELFAADKAELDSISAT CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHEEEEECCHHHHHHHHHH LASDQAYRDARVDFSPVLSTLRFSVEKKPGGKAVLKVTSSRPVNDPFIDMLVELSWASGR HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCH LVREYTMLLDPPGMASPQTVAPVAVTPAQSPARAAPAPVAPPAAQPPAAADAPVSEPPAA HHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TATATPAPKSTAPQDTAPTRVKVKRGDTLIGIAQRVRPDSVSLEQTLVGLYRENTHAFVG CCCCCCCCCCCCCCCCCCCEEEEECCCEEEHHHHHCCCCCCCHHHHHHHHHHCCCHHHHC NMNRLKAGRTLAVPTAEAVAAIPQKEAVRELKLQAADWNAYRQKLAASVSGTAPTEPAAG CHHHHCCCCEEECCCHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCC QASSGKVTSKVEDKAAAAAADKKDVLKLSKVAPADSAANKGEASALQEKLRAQEEDAIAR CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH QKALAESDQRVALLEKQIQDMQKLADMKAQAQAPAEPEPSAASAATPEPAAAPAEPAKPA HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PVAPAVAAPPAAPASAENWFEPLLANPLYWGGSLAAVGLGGVLWWMMAGGRRRKTGTTGL CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC EDSLITGGDVRPDTVLGSAAGGSVNTGDTSFLTDFSQAGLGTIDTHDVDPIAEAEVYMAY CCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE GRDAQAEEILKEAIAKNPDRHEVRVKLLEIYAARRNTAAFEAAAGELYAALGSKSSPLWD CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHH KACEMGRGIDPTNPLYGGVQSSAAPAAAAATFAATPAVAGGAVGFDTERVVDAGNAISAE HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCC TAHSTAVETERPQAVDAAVAAVASPVLDFESAGQAPAFERRAGGGGAAVTADADETAADD CCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEEEECCCCCCCCCC GLLDLEGLSFDLPALDTSASTDDTLNVGLGLEDDKPADGKFDFSGLDLDLGDGSNDVELD CCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHH EVGTKLDLARAYVEMGDKEGAREILNEVVTEGNDSQKADAKGMLGALG HHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHCHHHCCC >Mature Secondary Structure MKLKRFTTQLAAAGLVALPLMAHAAGLGKLSVTSALGQPLAAEIELFAADKAELDSISAT CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHEEEEECCHHHHHHHHHH LASDQAYRDARVDFSPVLSTLRFSVEKKPGGKAVLKVTSSRPVNDPFIDMLVELSWASGR HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCH LVREYTMLLDPPGMASPQTVAPVAVTPAQSPARAAPAPVAPPAAQPPAAADAPVSEPPAA HHHHHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC TATATPAPKSTAPQDTAPTRVKVKRGDTLIGIAQRVRPDSVSLEQTLVGLYRENTHAFVG CCCCCCCCCCCCCCCCCCCEEEEECCCEEEHHHHHCCCCCCCHHHHHHHHHHCCCHHHHC NMNRLKAGRTLAVPTAEAVAAIPQKEAVRELKLQAADWNAYRQKLAASVSGTAPTEPAAG CHHHHCCCCEEECCCHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCC QASSGKVTSKVEDKAAAAAADKKDVLKLSKVAPADSAANKGEASALQEKLRAQEEDAIAR CCCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH QKALAESDQRVALLEKQIQDMQKLADMKAQAQAPAEPEPSAASAATPEPAAAPAEPAKPA HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PVAPAVAAPPAAPASAENWFEPLLANPLYWGGSLAAVGLGGVLWWMMAGGRRRKTGTTGL CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC EDSLITGGDVRPDTVLGSAAGGSVNTGDTSFLTDFSQAGLGTIDTHDVDPIAEAEVYMAY CCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEE GRDAQAEEILKEAIAKNPDRHEVRVKLLEIYAARRNTAAFEAAAGELYAALGSKSSPLWD CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHH KACEMGRGIDPTNPLYGGVQSSAAPAAAAATFAATPAVAGGAVGFDTERVVDAGNAISAE HHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCCC TAHSTAVETERPQAVDAAVAAVASPVLDFESAGQAPAFERRAGGGGAAVTADADETAADD CCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCCEEEECCCCCCCCCC GLLDLEGLSFDLPALDTSASTDDTLNVGLGLEDDKPADGKFDFSGLDLDLGDGSNDVELD CCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHH EVGTKLDLARAYVEMGDKEGAREILNEVVTEGNDSQKADAKGMLGALG HHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA