| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317921
Identifier: 74317921
GI number: 74317921
Start: 1999727
End: 2000686
Strand: Direct
Name: 74317921
Synonym: Tbd_1903
Alternate gene names: NA
Gene position: 1999727-2000686 (Clockwise)
Preceding gene: 74317907
Following gene: 74317922
Centisome position: 68.72
GC content: 66.46
Gene sequence:
>960_bases ATGAGCCGAGCATATCATATGGCCCTGTTCCGTTTCTTCGCTGTGTTCGCCGTCTGCATCGTCGCATTCGGCACGCCGGC TCTGGCGGACGATGCGCAGGACATCAACCGGCGCTTCCGCAGCGGCGACCTGACGGGGGCGTTGGAGCAGGCCGAGCGGC ATCTCGCGAAAAATCCCAAGGATGCGCAGGTGCGCTTCCTGAAGGGCCTGATCCTTGGCGACCAGGGCAAGCGCGACGAG GCCATCCGCGTATTCACGAGTCTGACCGAGGACTTCCCCGAACTGCCCGAGCCCTACAACAACCTCGCCGTGCTGTACGC GGCGCAGGAAAAGTACGACGCCGCGAAACACGCGCTCGACATGGCGATTCGTGTCCACCCGAACTACGCGACCGCTCACG AGAACCTCGGCGATCTCTATGCCAAGCTCGCGACGCTCGCCTACGACAAGGCGCTCGCGCTCGACACCGGAAATACGGCC GTGCAGACCAAGCGCGCCCGGATCGGCGACGTGATCGCCGACGTCGGGTCACCTGCCCCCGCAGCGGACGAGGCCGCCAG CACCACGGGCGCACGCACCACGGGTACGAGCACCACGGGTACGCGCCCTGCGGATTCGTCCGACGGCGCGGTGGCGGCCA TCGAAGCGGCAATCGCCGACTGGGCGAAGGCCTGGTCGAAGCAGGACGTCGCGGGTTATTTCGCGGCTTACGCGAGCAAT TTCAGTCCCGCGGGGCTGAGCCGTGCGCAGTGGGAGGCGCAGCGCCGCAGCCGCATCACCGCGCCGCGCAGCATCGACGT ACAGATCAGCGACCTCGAGATCGAGCGGCAGGGAGACACGGCCCGCGCGAACTTTCGCCAGTCCTATCGCTCGGACCGTT TGAGCACGACCGTCAGCAAGGCGCTCGCCCTGACGCGTGTCGACGGTCGCTGGCGCATCGTCGACGAAATCTCCCGATAA
Upstream 100 bases:
>100_bases CATGGGGCGAATCGGACGGAAGCGTTGAGGACAGGCTGGAAACACGCGTCGAAGCGGTGTCTGAGCCCGTTCGACGCTGC TAGAATGCCGGTTTCCCGAG
Downstream 100 bases:
>100_bases GCATGTTTCGCCTGGTCTTGCTTCCGATCCACAACACTGCGCGCTGAACATCGAGTCACGCCGCGCGCGTCCTATTCGCG GGCGATGACGTTTGAGGAGC
Product: TPR repeat-containing protein
Products: NA
Alternate protein names: Tetratricopeptide TPR_2 Repeat Protein; Tetratricopeptide Repeat Family Protein; Signal Peptide Protein; Tpr Repeat-Containing Protein; Tetratricopeptide TPR_1 Repeat-Containing Protein; Tetratricopeptide Repeat-Containing Protein; Tetratricopeptide Repeat Protein; TPR Domain-Containing Protein; Exported Protein
Number of amino acids: Translated: 319; Mature: 318
Protein sequence:
>319_residues MSRAYHMALFRFFAVFAVCIVAFGTPALADDAQDINRRFRSGDLTGALEQAERHLAKNPKDAQVRFLKGLILGDQGKRDE AIRVFTSLTEDFPELPEPYNNLAVLYAAQEKYDAAKHALDMAIRVHPNYATAHENLGDLYAKLATLAYDKALALDTGNTA VQTKRARIGDVIADVGSPAPAADEAASTTGARTTGTSTTGTRPADSSDGAVAAIEAAIADWAKAWSKQDVAGYFAAYASN FSPAGLSRAQWEAQRRSRITAPRSIDVQISDLEIERQGDTARANFRQSYRSDRLSTTVSKALALTRVDGRWRIVDEISR
Sequences:
>Translated_319_residues MSRAYHMALFRFFAVFAVCIVAFGTPALADDAQDINRRFRSGDLTGALEQAERHLAKNPKDAQVRFLKGLILGDQGKRDE AIRVFTSLTEDFPELPEPYNNLAVLYAAQEKYDAAKHALDMAIRVHPNYATAHENLGDLYAKLATLAYDKALALDTGNTA VQTKRARIGDVIADVGSPAPAADEAASTTGARTTGTSTTGTRPADSSDGAVAAIEAAIADWAKAWSKQDVAGYFAAYASN FSPAGLSRAQWEAQRRSRITAPRSIDVQISDLEIERQGDTARANFRQSYRSDRLSTTVSKALALTRVDGRWRIVDEISR >Mature_318_residues SRAYHMALFRFFAVFAVCIVAFGTPALADDAQDINRRFRSGDLTGALEQAERHLAKNPKDAQVRFLKGLILGDQGKRDEA IRVFTSLTEDFPELPEPYNNLAVLYAAQEKYDAAKHALDMAIRVHPNYATAHENLGDLYAKLATLAYDKALALDTGNTAV QTKRARIGDVIADVGSPAPAADEAASTTGARTTGTSTTGTRPADSSDGAVAAIEAAIADWAKAWSKQDVAGYFAAYASNF SPAGLSRAQWEAQRRSRITAPRSIDVQISDLEIERQGDTARANFRQSYRSDRLSTTVSKALALTRVDGRWRIVDEISR
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34731; Mature: 34600
Theoretical pI: Translated: 7.71; Mature: 7.71
Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRAYHMALFRFFAVFAVCIVAFGTPALADDAQDINRRFRSGDLTGALEQAERHLAKNPK CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCC DAQVRFLKGLILGDQGKRDEAIRVFTSLTEDFPELPEPYNNLAVLYAAQEKYDAAKHALD HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHH MAIRVHPNYATAHENLGDLYAKLATLAYDKALALDTGNTAVQTKRARIGDVIADVGSPAP EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCCCCC AADEAASTTGARTTGTSTTGTRPADSSDGAVAAIEAAIADWAKAWSKQDVAGYFAAYASN CCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC FSPAGLSRAQWEAQRRSRITAPRSIDVQISDLEIERQGDTARANFRQSYRSDRLSTTVSK CCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH ALALTRVDGRWRIVDEISR HHHHHCCCCCEEHHHHHCC >Mature Secondary Structure SRAYHMALFRFFAVFAVCIVAFGTPALADDAQDINRRFRSGDLTGALEQAERHLAKNPK CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCC DAQVRFLKGLILGDQGKRDEAIRVFTSLTEDFPELPEPYNNLAVLYAAQEKYDAAKHALD HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHH MAIRVHPNYATAHENLGDLYAKLATLAYDKALALDTGNTAVQTKRARIGDVIADVGSPAP EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHCCCCCC AADEAASTTGARTTGTSTTGTRPADSSDGAVAAIEAAIADWAKAWSKQDVAGYFAAYASN CCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC FSPAGLSRAQWEAQRRSRITAPRSIDVQISDLEIERQGDTARANFRQSYRSDRLSTTVSK CCCCCCCHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH ALALTRVDGRWRIVDEISR HHHHHCCCCCEEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA