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The map label for this gene is rfbD [H]

Identifier: 74317896

GI number: 74317896

Start: 1975254

End: 1976069

Strand: Reverse

Name: rfbD [H]

Synonym: Tbd_1878

Alternate gene names: 74317896

Gene position: 1976069-1975254 (Counterclockwise)

Preceding gene: 74317897

Following gene: 74317895

Centisome position: 67.91

GC content: 53.06

Gene sequence:

>816_bases
ATGACAGACTACTTCAGTATCAGTTTTACCAGACGCTTACAGGACGCCATCTCAGACATGGCCAAAAGCCTAGCAGCCGT
GTATTTCTGGGGGTTTCTGGGGTGGCACGATATCCGGCAACGGTATAGGCGATCAACCCTGGGTCCCATGTGGATTACGG
CCAGCACCGGGGTAATGGTCGCGGCGATTGGCCTGCTGTATTCTCAGATCTTCCATGCCGATCTCGATCAATACCTGCCC
TATCTGGCTATCGGCCTAGTGACATGGGGGCTTATCTCCACCATCATTAATGAGAGTTGCACTGTGTTCGTGGGTGCCGA
GGCCGGGATAAAAAGCAATTCGATTCCCCTGACGGCACATGTGCTTCGCCTTGTGTGGCGTAATGTGATCGTATTCGGCC
ACAACCTACTGATCGTGGCCGTGGTTTTCGCGCTCTTTCCGAGGAGAATCGGCTGGGAAGCCTTTCTTTTGCTGCCCGCC
ATTCTGTTAGTTGCGCTGAACGGAGTGTGGATGGGGCTGTTTCTCGGGGTCTTGTGCACTCGTTTTCGAGATGTTGCGCA
AATAGTAATGAATGTGATGCAAATCGCGTTCTACCTGACCCCCGTGATTTGGCATTCCGACGTATTGAAAGGGCGTCACT
GGGCAGTTGACTTTAATCCCTTCTATTACCTTCTAGAAGCCACGAGGGCGCCTCTTCTCGGTGGCGGGCAACTCGGCCAA
ATTTTTGGCATCACTGCGCTACTGACTGTGGTCGGATTGTCGGTCACCCTTCTATTCTTTGCGCGTTTTCGTTCACGCGT
TGCGTACTGGCTCTGA

Upstream 100 bases:

>100_bases
GCTTGACCGAAGAGATGCTGGAGTATATGGCGGTCCAGATTGAGTTGTTCCTCGGAATTGGGTTCTAAAAAAGAAGCGGG
GGACGCCCCCTCGTTGAGAC

Downstream 100 bases:

>100_bases
CCGTGTCTCATATTCGCGCCACCGACCTCGTCGTAGATTTTCCTATCTACGACGCCTCCCAACGTTCCTTGCGAAAGAGG
TTTCTCAGCGCCGCTACAGG

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MTDYFSISFTRRLQDAISDMAKSLAAVYFWGFLGWHDIRQRYRRSTLGPMWITASTGVMVAAIGLLYSQIFHADLDQYLP
YLAIGLVTWGLISTIINESCTVFVGAEAGIKSNSIPLTAHVLRLVWRNVIVFGHNLLIVAVVFALFPRRIGWEAFLLLPA
ILLVALNGVWMGLFLGVLCTRFRDVAQIVMNVMQIAFYLTPVIWHSDVLKGRHWAVDFNPFYYLLEATRAPLLGGGQLGQ
IFGITALLTVVGLSVTLLFFARFRSRVAYWL

Sequences:

>Translated_271_residues
MTDYFSISFTRRLQDAISDMAKSLAAVYFWGFLGWHDIRQRYRRSTLGPMWITASTGVMVAAIGLLYSQIFHADLDQYLP
YLAIGLVTWGLISTIINESCTVFVGAEAGIKSNSIPLTAHVLRLVWRNVIVFGHNLLIVAVVFALFPRRIGWEAFLLLPA
ILLVALNGVWMGLFLGVLCTRFRDVAQIVMNVMQIAFYLTPVIWHSDVLKGRHWAVDFNPFYYLLEATRAPLLGGGQLGQ
IFGITALLTVVGLSVTLLFFARFRSRVAYWL
>Mature_270_residues
TDYFSISFTRRLQDAISDMAKSLAAVYFWGFLGWHDIRQRYRRSTLGPMWITASTGVMVAAIGLLYSQIFHADLDQYLPY
LAIGLVTWGLISTIINESCTVFVGAEAGIKSNSIPLTAHVLRLVWRNVIVFGHNLLIVAVVFALFPRRIGWEAFLLLPAI
LLVALNGVWMGLFLGVLCTRFRDVAQIVMNVMQIAFYLTPVIWHSDVLKGRHWAVDFNPFYYLLEATRAPLLGGGQLGQI
FGITALLTVVGLSVTLLFFARFRSRVAYWL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 30527; Mature: 30395

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDYFSISFTRRLQDAISDMAKSLAAVYFWGFLGWHDIRQRYRRSTLGPMWITASTGVMV
CCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHH
AAIGLLYSQIFHADLDQYLPYLAIGLVTWGLISTIINESCTVFVGAEAGIKSNSIPLTAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHH
VLRLVWRNVIVFGHNLLIVAVVFALFPRRIGWEAFLLLPAILLVALNGVWMGLFLGVLCT
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFRDVAQIVMNVMQIAFYLTPVIWHSDVLKGRHWAVDFNPFYYLLEATRAPLLGGGQLGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCHHH
IFGITALLTVVGLSVTLLFFARFRSRVAYWL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TDYFSISFTRRLQDAISDMAKSLAAVYFWGFLGWHDIRQRYRRSTLGPMWITASTGVMV
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHH
AAIGLLYSQIFHADLDQYLPYLAIGLVTWGLISTIINESCTVFVGAEAGIKSNSIPLTAH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHH
VLRLVWRNVIVFGHNLLIVAVVFALFPRRIGWEAFLLLPAILLVALNGVWMGLFLGVLCT
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFRDVAQIVMNVMQIAFYLTPVIWHSDVLKGRHWAVDFNPFYYLLEATRAPLLGGGQLGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCHHH
IFGITALLTVVGLSVTLLFFARFRSRVAYWL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]