| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317879
Identifier: 74317879
GI number: 74317879
Start: 1955614
End: 1958256
Strand: Reverse
Name: 74317879
Synonym: Tbd_1861
Alternate gene names: NA
Gene position: 1958256-1955614 (Counterclockwise)
Preceding gene: 74317880
Following gene: 74317872
Centisome position: 67.3
GC content: 61.94
Gene sequence:
>2643_bases ATGCCTCGCTTTCCTGGTCAAATTGGCACGCGGCATCAAGGCGGCTTCAGCCTGGTCGAGGCGCTGTTTTCCGCATTGAT ACTGGCCGTCGCGCTGCTCGGACTGGCCGGGTTCCATGCGGCCGCCATGCAGGACGGCAGCCTCGTCAAGGCGCGCTCGA TCGCGGCCAGCCTGGCTCAGGAGAAACTGGATGACCTGCGCGGTTTTACCCGCCTCGAAGACGACGCCACTACGACGGGC GTGAACGAATGTGCCGACCCGACGTTCTGTTTCAGTGAAATCGCCAATAACGCCGGGGGACGCGAAAACAGCGGCAGTCT GCTCCTTCCCTCGGGAACGGTCAGTGGTTACACCGACAGCTATTCGCTCGAATGGGCTGTGACCTGCGCGGCCGAAACGG CCGGCAGCGCATTGAGTTTTAGCAGCACCTGCACGGACCCGACCGCAAAGCTGGCAACCGTGACCGTTTCCTGGACCGAC AGCAAGGGCGGACCTCAGGAGGTCGAATTGCAGGGCGTGATCTATGCGATGGATCCGGCGCGTATGGCGATGGGGACGGC CAGTGCCTTTTCGACGCAAAAACCCGTGGCAGGTTATACGCCTGTCGGGGTGCCGGACGCTGTTCCTGTTCCGATCAACA CCGGGGGCTCCCAGTTCAAGGAATCGAGCAAGCCGCTGCCCGAAGTCTCCCAGAGCGGTGACGGGATCAACGTGAGCTTC GACTCGGTCGTCTACTCGCGCGACGGCGCAGGCTACCAGAAGGATTCGCAGGAAGAATTCAGCAGCGTTACCTGCGAGTG TCAGTTCAACAGCGGGACCGGCACAGGCTACACGCCCACGCGCAAGGTATGGAACGGCTCCCGACTGGTGAACCAGGCCG GTGAAGCCGTCACCAAGAAAACAGGGCAGCCCCTCGGCAACAACCCGCCGTCCCAGTGCGACGTCTGCTGTCGTGACCAC CACGACCGCGCCGCCAACGACCCGAAGTACGATCCGAAGCGGCCCACTTCCGACTACACGGGCAGCGAAGATCACAAACA TTATTGGTATTCGAGCTGCGTCAGTGGCGGGGTGGGTGCGGCGAACTGCACCGACGCCAACAAGGATGCAAGCCTCGCTT CGGGCTCGGCCTTCACCGAAGTCACCGACGGGGCTTACCTCGAGTCGTGCCGCGTCGGACGCGTCGACGGTTTCTGGCGC GTGATGCAGGACTGGCAGCTGCGCAAGGTCACCATCCTTCCGTACAACTTCCTGCTGAATAATCAGACCAACCTGAACAA TTACGTCGACGTCGTCGAGAAGGTTGTGGAAAACGCAGTGAAGACAGACTCCGGCGGCTCCGGCGTTACCGTGCCGACGC TGGGTGGACGCGATCTGACACTTCCCTCAGGTTCCGATCCGGTGCAGCTACTGTCGCGGGCGGTCTACGTCGACACGATA TACAACGCCGAAGACGATCCGGCGACCTCGAGCGTGAACGAGCAAAACACCGTCGACACGGCGTACTACTCAGCGTTGCT TGCCAAGGTCACTGCCAGTCAGACCGCGTCGAACTCGGCGTGGCTGGAATTCGCGCCATTCTACGAAGCCAATCTCACGC TGCTCTTCGACTGGATATCCTCGGACACCGGTGTCGCCACCGTGACCAGCGAAGCCATCAACGCGATTGTCGACCCCGTG AACAGGTATTACGGCAGCTTCAGCCGTGGCAAGGTGACCGTGCAGAGCGGCACAACCGCGGGGACGTCGACGATTACGGC CAAGGCCCGGCTTTCCAACAGCGGCGTGACGGGTGGCGTCAACGTTAACGTAAATCCCACCCCCCCAACTTATGTGCCCG GCGTGAGCTACGGTACCGATGTATACGACAATCTGAGCAGCAATGTGCTGGCCGACACGATCACCGTGAGCCGTCCGGCC GCGGGGACGGCACATTCCATCACGGGGAAGGTCGTGAAAGGGAATGGATCTGCCAACGTGGCCGAGACGGGCACCCCGGC ATCGCCGATCACGGTGACGCTCAACACGACGTCGGGCTCGGTCATCAGCCCATGCAGTGCCCAGGTCGGCGACTCGGATG TTTACGCGTGGTACTACTCGTGTACCGTCTCGAACGGCTGGACCGGCACCCTGACCGTCGGCAGTACGGGATCGGTATAC ACGTTCGACGACGCTACCAGCAGATCGCTCTCCACTTCGTCCATGACAGTGGCTAATGCGACGACGGTCGGCCAGGTCAT CGCCTTCGGCGACACGGTGACCCTGACTGGCCAAATCACGAACGCCAACTTCCCGAACGGAGCACCGCAGCCGGCTGTTA CCGCGGCCGACACGGCGATTACGTTCAGCGGAACATCCAGCGGTACTTGCACCAACAAGGCTGTGACGGGCGCTGGCAGT AACGAGAAGCTGGTCTACTCCTGCGTCGTGCCGAAAGGATGGACCGGCGCCATTACCATCGCCGTCGATCCCACCGGGGG GACGTATACCTATCTCTCGCCAGGCGGTACGCCTTGCAACGGATCGACCACGGGTTCCTGCACCCTGGCATCGATAACCT CGGCGCTGGCGGATGTGGATGGTACCTCGAGCTCGGCGACGCTCCTGCAAAAACAACAAACCAACGTCGAGGCGCGGCGC TGA
Upstream 100 bases:
>100_bases TCGACTCCGAAGTTTTGGAAAACCTGAAAAACAGCCCATCCGGTCGCAATTTGGCGCGCATTCCCGGCGCCTGGTCGGAT GTTCAGTGATGGAGACGGCT
Downstream 100 bases:
>100_bases CACGCACACGCGTAGTCACGGAATCGGGGCCTTCGGGCCCCGATTCTTTTTAGCTTTGGGCGGAAATCGTCAGGACTGGT TTGGAGGTGCAGGTGATCTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 880; Mature: 879
Protein sequence:
>880_residues MPRFPGQIGTRHQGGFSLVEALFSALILAVALLGLAGFHAAAMQDGSLVKARSIAASLAQEKLDDLRGFTRLEDDATTTG VNECADPTFCFSEIANNAGGRENSGSLLLPSGTVSGYTDSYSLEWAVTCAAETAGSALSFSSTCTDPTAKLATVTVSWTD SKGGPQEVELQGVIYAMDPARMAMGTASAFSTQKPVAGYTPVGVPDAVPVPINTGGSQFKESSKPLPEVSQSGDGINVSF DSVVYSRDGAGYQKDSQEEFSSVTCECQFNSGTGTGYTPTRKVWNGSRLVNQAGEAVTKKTGQPLGNNPPSQCDVCCRDH HDRAANDPKYDPKRPTSDYTGSEDHKHYWYSSCVSGGVGAANCTDANKDASLASGSAFTEVTDGAYLESCRVGRVDGFWR VMQDWQLRKVTILPYNFLLNNQTNLNNYVDVVEKVVENAVKTDSGGSGVTVPTLGGRDLTLPSGSDPVQLLSRAVYVDTI YNAEDDPATSSVNEQNTVDTAYYSALLAKVTASQTASNSAWLEFAPFYEANLTLLFDWISSDTGVATVTSEAINAIVDPV NRYYGSFSRGKVTVQSGTTAGTSTITAKARLSNSGVTGGVNVNVNPTPPTYVPGVSYGTDVYDNLSSNVLADTITVSRPA AGTAHSITGKVVKGNGSANVAETGTPASPITVTLNTTSGSVISPCSAQVGDSDVYAWYYSCTVSNGWTGTLTVGSTGSVY TFDDATSRSLSTSSMTVANATTVGQVIAFGDTVTLTGQITNANFPNGAPQPAVTAADTAITFSGTSSGTCTNKAVTGAGS NEKLVYSCVVPKGWTGAITIAVDPTGGTYTYLSPGGTPCNGSTTGSCTLASITSALADVDGTSSSATLLQKQQTNVEARR
Sequences:
>Translated_880_residues MPRFPGQIGTRHQGGFSLVEALFSALILAVALLGLAGFHAAAMQDGSLVKARSIAASLAQEKLDDLRGFTRLEDDATTTG VNECADPTFCFSEIANNAGGRENSGSLLLPSGTVSGYTDSYSLEWAVTCAAETAGSALSFSSTCTDPTAKLATVTVSWTD SKGGPQEVELQGVIYAMDPARMAMGTASAFSTQKPVAGYTPVGVPDAVPVPINTGGSQFKESSKPLPEVSQSGDGINVSF DSVVYSRDGAGYQKDSQEEFSSVTCECQFNSGTGTGYTPTRKVWNGSRLVNQAGEAVTKKTGQPLGNNPPSQCDVCCRDH HDRAANDPKYDPKRPTSDYTGSEDHKHYWYSSCVSGGVGAANCTDANKDASLASGSAFTEVTDGAYLESCRVGRVDGFWR VMQDWQLRKVTILPYNFLLNNQTNLNNYVDVVEKVVENAVKTDSGGSGVTVPTLGGRDLTLPSGSDPVQLLSRAVYVDTI YNAEDDPATSSVNEQNTVDTAYYSALLAKVTASQTASNSAWLEFAPFYEANLTLLFDWISSDTGVATVTSEAINAIVDPV NRYYGSFSRGKVTVQSGTTAGTSTITAKARLSNSGVTGGVNVNVNPTPPTYVPGVSYGTDVYDNLSSNVLADTITVSRPA AGTAHSITGKVVKGNGSANVAETGTPASPITVTLNTTSGSVISPCSAQVGDSDVYAWYYSCTVSNGWTGTLTVGSTGSVY TFDDATSRSLSTSSMTVANATTVGQVIAFGDTVTLTGQITNANFPNGAPQPAVTAADTAITFSGTSSGTCTNKAVTGAGS NEKLVYSCVVPKGWTGAITIAVDPTGGTYTYLSPGGTPCNGSTTGSCTLASITSALADVDGTSSSATLLQKQQTNVEARR >Mature_879_residues PRFPGQIGTRHQGGFSLVEALFSALILAVALLGLAGFHAAAMQDGSLVKARSIAASLAQEKLDDLRGFTRLEDDATTTGV NECADPTFCFSEIANNAGGRENSGSLLLPSGTVSGYTDSYSLEWAVTCAAETAGSALSFSSTCTDPTAKLATVTVSWTDS KGGPQEVELQGVIYAMDPARMAMGTASAFSTQKPVAGYTPVGVPDAVPVPINTGGSQFKESSKPLPEVSQSGDGINVSFD SVVYSRDGAGYQKDSQEEFSSVTCECQFNSGTGTGYTPTRKVWNGSRLVNQAGEAVTKKTGQPLGNNPPSQCDVCCRDHH DRAANDPKYDPKRPTSDYTGSEDHKHYWYSSCVSGGVGAANCTDANKDASLASGSAFTEVTDGAYLESCRVGRVDGFWRV MQDWQLRKVTILPYNFLLNNQTNLNNYVDVVEKVVENAVKTDSGGSGVTVPTLGGRDLTLPSGSDPVQLLSRAVYVDTIY NAEDDPATSSVNEQNTVDTAYYSALLAKVTASQTASNSAWLEFAPFYEANLTLLFDWISSDTGVATVTSEAINAIVDPVN RYYGSFSRGKVTVQSGTTAGTSTITAKARLSNSGVTGGVNVNVNPTPPTYVPGVSYGTDVYDNLSSNVLADTITVSRPAA GTAHSITGKVVKGNGSANVAETGTPASPITVTLNTTSGSVISPCSAQVGDSDVYAWYYSCTVSNGWTGTLTVGSTGSVYT FDDATSRSLSTSSMTVANATTVGQVIAFGDTVTLTGQITNANFPNGAPQPAVTAADTAITFSGTSSGTCTNKAVTGAGSN EKLVYSCVVPKGWTGAITIAVDPTGGTYTYLSPGGTPCNGSTTGSCTLASITSALADVDGTSSSATLLQKQQTNVEARR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 91304; Mature: 91173
Theoretical pI: Translated: 4.48; Mature: 4.48
Prosite motif: PS00409 PROKAR_NTER_METHYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRFPGQIGTRHQGGFSLVEALFSALILAVALLGLAGFHAAAMQDGSLVKARSIAASLAQ CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH EKLDDLRGFTRLEDDATTTGVNECADPTFCFSEIANNAGGRENSGSLLLPSGTVSGYTDS HHHHHHHCCHHCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC YSLEWAVTCAAETAGSALSFSSTCTDPTAKLATVTVSWTDSKGGPQEVELQGVIYAMDPA EEEEEEEEEECCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEEECCH RMAMGTASAFSTQKPVAGYTPVGVPDAVPVPINTGGSQFKESSKPLPEVSQSGDGINVSF HHHHCCHHHCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHCCCCCCHHHCCCCCEEEEE DSVVYSRDGAGYQKDSQEEFSSVTCECQFNSGTGTGYTPTRKVWNGSRLVNQAGEAVTKK HHEEEECCCCCCCCCCHHHHCCEEEEEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHHH TGQPLGNNPPSQCDVCCRDHHDRAANDPKYDPKRPTSDYTGSEDHKHYWYSSCVSGGVGA CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC ANCTDANKDASLASGSAFTEVTDGAYLESCRVGRVDGFWRVMQDWQLRKVTILPYNFLLN CCCCCCCCCCCCCCCCCEEEECCCHHHHHCCCCCCHHHHHHHHCCCEEEEEEEEEEEEEC NQTNLNNYVDVVEKVVENAVKTDSGGSGVTVPTLGGRDLTLPSGSDPVQLLSRAVYVDTI CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCCCHHHHHHHHEEEEEE YNAEDDPATSSVNEQNTVDTAYYSALLAKVTASQTASNSAWLEFAPFYEANLTLLFDWIS ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEEECC SDTGVATVTSEAINAIVDPVNRYYGSFSRGKVTVQSGTTAGTSTITAKARLSNSGVTGGV CCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCE NVNVNPTPPTYVPGVSYGTDVYDNLSSNVLADTITVSRPAAGTAHSITGKVVKGNGSANV EEEECCCCCCCCCCCCCCCHHHHCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCC AETGTPASPITVTLNTTSGSVISPCSAQVGDSDVYAWYYSCTVSNGWTGTLTVGSTGSVY CCCCCCCCCEEEEEECCCCCEECCCCCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCEE TFDDATSRSLSTSSMTVANATTVGQVIAFGDTVTLTGQITNANFPNGAPQPAVTAADTAI EECCCCCCCCCCCCEEEECCHHHCEEEEECCEEEEEEEEECCCCCCCCCCCCEEECCEEE TFSGTSSGTCTNKAVTGAGSNEKLVYSCVVPKGWTGAITIAVDPTGGTYTYLSPGGTPCN EECCCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCC GSTTGSCTLASITSALADVDGTSSSATLLQKQQTNVEARR CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC >Mature Secondary Structure PRFPGQIGTRHQGGFSLVEALFSALILAVALLGLAGFHAAAMQDGSLVKARSIAASLAQ CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH EKLDDLRGFTRLEDDATTTGVNECADPTFCFSEIANNAGGRENSGSLLLPSGTVSGYTDS HHHHHHHCCHHCCCCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCC YSLEWAVTCAAETAGSALSFSSTCTDPTAKLATVTVSWTDSKGGPQEVELQGVIYAMDPA EEEEEEEEEECCCCCCEEECCCCCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEEECCH RMAMGTASAFSTQKPVAGYTPVGVPDAVPVPINTGGSQFKESSKPLPEVSQSGDGINVSF HHHHCCHHHCCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHCCCCCCHHHCCCCCEEEEE DSVVYSRDGAGYQKDSQEEFSSVTCECQFNSGTGTGYTPTRKVWNGSRLVNQAGEAVTKK HHEEEECCCCCCCCCCHHHHCCEEEEEEECCCCCCCCCCCHHHCCCHHHHHHHHHHHHHH TGQPLGNNPPSQCDVCCRDHHDRAANDPKYDPKRPTSDYTGSEDHKHYWYSSCVSGGVGA CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCC ANCTDANKDASLASGSAFTEVTDGAYLESCRVGRVDGFWRVMQDWQLRKVTILPYNFLLN CCCCCCCCCCCCCCCCCEEEECCCHHHHHCCCCCCHHHHHHHHCCCEEEEEEEEEEEEEC NQTNLNNYVDVVEKVVENAVKTDSGGSGVTVPTLGGRDLTLPSGSDPVQLLSRAVYVDTI CCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCCCHHHHHHHHEEEEEE YNAEDDPATSSVNEQNTVDTAYYSALLAKVTASQTASNSAWLEFAPFYEANLTLLFDWIS ECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEEECC SDTGVATVTSEAINAIVDPVNRYYGSFSRGKVTVQSGTTAGTSTITAKARLSNSGVTGGV CCCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCCCCE NVNVNPTPPTYVPGVSYGTDVYDNLSSNVLADTITVSRPAAGTAHSITGKVVKGNGSANV EEEECCCCCCCCCCCCCCCHHHHCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCC AETGTPASPITVTLNTTSGSVISPCSAQVGDSDVYAWYYSCTVSNGWTGTLTVGSTGSVY CCCCCCCCCEEEEEECCCCCEECCCCCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCEE TFDDATSRSLSTSSMTVANATTVGQVIAFGDTVTLTGQITNANFPNGAPQPAVTAADTAI EECCCCCCCCCCCCEEEECCHHHCEEEEECCEEEEEEEEECCCCCCCCCCCCEEECCEEE TFSGTSSGTCTNKAVTGAGSNEKLVYSCVVPKGWTGAITIAVDPTGGTYTYLSPGGTPCN EECCCCCCCCCCCEEECCCCCCCEEEEEECCCCCCCEEEEEECCCCCEEEEECCCCCCCC GSTTGSCTLASITSALADVDGTSSSATLLQKQQTNVEARR CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA