| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317808
Identifier: 74317808
GI number: 74317808
Start: 1890703
End: 1892226
Strand: Reverse
Name: 74317808
Synonym: Tbd_1790
Alternate gene names: NA
Gene position: 1892226-1890703 (Counterclockwise)
Preceding gene: 74317809
Following gene: 74317807
Centisome position: 65.03
GC content: 56.76
Gene sequence:
>1524_bases TTGAAGTCACAGTGGTTCGGTCGGTCGGCCGCAATCGGGCAGTACTCGACGCACACCCATTTCTCGGTGCTCGGTGTGCT CGCTTTCATGCTTGTGGCGATCGCCCTCATTCTGCTGGCGGCCCTCATGGGTGCCTCTTTGGCGATCGGATTCTGGCCTT TCGCCGTCGCCCTGGTTGGCGGCGTTTTCGTGCTTGGGTTCTATGCGGTTCTTGGCGGGAGAAGCGGGCCGGGGCTGCGC GACTCCTTTTTCTGGCTCGCGTTCGTGCTGATCTTCGCGACCGACTCGCTGAAAAAAGTCACGGGCTACTCCGCCAATTT CGTTCTGGAGTTTTCTCTCATCCTGGCCGCGCCCCTGCTTGTCCCGACGCTCGTCCGCCTGCTCTCCGAATCGCGATTCT TCAAATGGTGGTTCGCAGGGCTCTCCGTTTTTTTCATCCTATCGCTGCTAAGCAGTTTTTTTGGAAGGTCCCATGTTTTC GCTGCGGCCTTCCAGTTTTTGACCAACCTGAAGTTCATACTGATTCTACTGTTGGGGTTTTATATTGTCTGGAGTGCCCG GACAGAGGCAATCTTCTGGTGGATCGTACGCTGGCTTTGGTTGCCGACCGCGATGCTCGTAGCTTGGCAGTGGGGGCACC CATCGAGCTATTTTGGGCTAATGCCCTACGCCACCGCATCGGCGGATCCGCTGCAATTGTTTCCGTCGCGAGCCGTAGGA CCGTTCAGCCATCCGACGTACCTCGGACTGTACATGGGTGTTCTCACAGTGTTTTGTGTGATCAATGCTATCTCCGGGGC CGGCCGCCGTTACTTCGTGATAGCGCTATGTTATTTTCTTCTGCTGCTTGCATCAGCACAGCGGCAGGAAACGGTCGCAG CGATCGTTGCCGCTACGGCAGCGGTGGGCCTCCTCCACGGCAAGCGGTTTGCTTTGCGAAGCGCGGTTATCGGCCTAGTC ACCGTTCTGGCGGTGGGCGGCGGGGCCTGGCTTCTTATCAAGGATAACCTCGTTCAGGAGGCGACAAAATGGGGCGTGAT TGGACACTCGGCAATTCAGCAGCCAAGACAGGTTCTCTACATTCATGCCGTTGAAATTGCGGATCAATATGCCCCCCTCG GAAGCGGCCTCGGAACCTTCGCCGGGGCCGGCGCACAGAAGTTCGACATTTCGCTGTATCTGGATCGCGGTTTTGCGCGG TATTCCTGGTTCTATAAGCAGAACGTGCTGATGGACACATACTGGACGAACTTCCTAGCCGAGACGGGTTGGGCCGGCGC GCTCCTGCTGTTAGCCCTGACGCTATTGCTGGTTGCGTTTACCGCAGTCAACAGCCTCGAGAAATATCCGTCGGAAATAA GGCGTTTTTGGCTGCTAGCGTTTGGGGGCATGGCTTTCGTGTTTTTGCTCTCCTTAACCTCTCCTTCGTTCCAGGACCCG GGGCTTTTTCTTGTTCCCGGAATTTTTCTTGGCGTCGCGTACAACCGCATGATGGCCTGGAAAAAACCCACAAAGCGAGG CTGA
Upstream 100 bases:
>100_bases GTGTTGCAGTGGGCGGCTATTTTTCTCGCTTTTGCGATAAGTGAGTCGGATTCGCCCAGAGCGGCACCGCCGCTATCGTA AGGATCAGAGAGGTTTCGGT
Downstream 100 bases:
>100_bases CATATGCAAACAGTTACCGTACGCACCCGTCGCGGAATAAAGTCAGGTTTGACGGCGACAGCCACACGTTCCGTCCGAAC CAGCGCCTCAGCGCTCATAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 507; Mature: 507
Protein sequence:
>507_residues MKSQWFGRSAAIGQYSTHTHFSVLGVLAFMLVAIALILLAALMGASLAIGFWPFAVALVGGVFVLGFYAVLGGRSGPGLR DSFFWLAFVLIFATDSLKKVTGYSANFVLEFSLILAAPLLVPTLVRLLSESRFFKWWFAGLSVFFILSLLSSFFGRSHVF AAAFQFLTNLKFILILLLGFYIVWSARTEAIFWWIVRWLWLPTAMLVAWQWGHPSSYFGLMPYATASADPLQLFPSRAVG PFSHPTYLGLYMGVLTVFCVINAISGAGRRYFVIALCYFLLLLASAQRQETVAAIVAATAAVGLLHGKRFALRSAVIGLV TVLAVGGGAWLLIKDNLVQEATKWGVIGHSAIQQPRQVLYIHAVEIADQYAPLGSGLGTFAGAGAQKFDISLYLDRGFAR YSWFYKQNVLMDTYWTNFLAETGWAGALLLLALTLLLVAFTAVNSLEKYPSEIRRFWLLAFGGMAFVFLLSLTSPSFQDP GLFLVPGIFLGVAYNRMMAWKKPTKRG
Sequences:
>Translated_507_residues MKSQWFGRSAAIGQYSTHTHFSVLGVLAFMLVAIALILLAALMGASLAIGFWPFAVALVGGVFVLGFYAVLGGRSGPGLR DSFFWLAFVLIFATDSLKKVTGYSANFVLEFSLILAAPLLVPTLVRLLSESRFFKWWFAGLSVFFILSLLSSFFGRSHVF AAAFQFLTNLKFILILLLGFYIVWSARTEAIFWWIVRWLWLPTAMLVAWQWGHPSSYFGLMPYATASADPLQLFPSRAVG PFSHPTYLGLYMGVLTVFCVINAISGAGRRYFVIALCYFLLLLASAQRQETVAAIVAATAAVGLLHGKRFALRSAVIGLV TVLAVGGGAWLLIKDNLVQEATKWGVIGHSAIQQPRQVLYIHAVEIADQYAPLGSGLGTFAGAGAQKFDISLYLDRGFAR YSWFYKQNVLMDTYWTNFLAETGWAGALLLLALTLLLVAFTAVNSLEKYPSEIRRFWLLAFGGMAFVFLLSLTSPSFQDP GLFLVPGIFLGVAYNRMMAWKKPTKRG >Mature_507_residues MKSQWFGRSAAIGQYSTHTHFSVLGVLAFMLVAIALILLAALMGASLAIGFWPFAVALVGGVFVLGFYAVLGGRSGPGLR DSFFWLAFVLIFATDSLKKVTGYSANFVLEFSLILAAPLLVPTLVRLLSESRFFKWWFAGLSVFFILSLLSSFFGRSHVF AAAFQFLTNLKFILILLLGFYIVWSARTEAIFWWIVRWLWLPTAMLVAWQWGHPSSYFGLMPYATASADPLQLFPSRAVG PFSHPTYLGLYMGVLTVFCVINAISGAGRRYFVIALCYFLLLLASAQRQETVAAIVAATAAVGLLHGKRFALRSAVIGLV TVLAVGGGAWLLIKDNLVQEATKWGVIGHSAIQQPRQVLYIHAVEIADQYAPLGSGLGTFAGAGAQKFDISLYLDRGFAR YSWFYKQNVLMDTYWTNFLAETGWAGALLLLALTLLLVAFTAVNSLEKYPSEIRRFWLLAFGGMAFVFLLSLTSPSFQDP GLFLVPGIFLGVAYNRMMAWKKPTKRG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55887; Mature: 55887
Theoretical pI: Translated: 10.27; Mature: 10.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSQWFGRSAAIGQYSTHTHFSVLGVLAFMLVAIALILLAALMGASLAIGFWPFAVALVG CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVFVLGFYAVLGGRSGPGLRDSFFWLAFVLIFATDSLKKVTGYSANFVLEFSLILAAPLL HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH VPTLVRLLSESRFFKWWFAGLSVFFILSLLSSFFGRSHVFAAAFQFLTNLKFILILLLGF HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH YIVWSARTEAIFWWIVRWLWLPTAMLVAWQWGHPSSYFGLMPYATASADPLQLFPSRAVG HHHHHCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCC PFSHPTYLGLYMGVLTVFCVINAISGAGRRYFVIALCYFLLLLASAQRQETVAAIVAATA CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH AVGLLHGKRFALRSAVIGLVTVLAVGGGAWLLIKDNLVQEATKWGVIGHSAIQQPRQVLY HHHHHHCHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCCHHHHHCHHHEEH IHAVEIADQYAPLGSGLGTFAGAGAQKFDISLYLDRGFARYSWFYKQNVLMDTYWTNFLA HHHHHHHHHHCCCCCCCHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCHHHHHHHHHHH ETGWAGALLLLALTLLLVAFTAVNSLEKYPSEIRRFWLLAFGGMAFVFLLSLTSPSFQDP HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GLFLVPGIFLGVAYNRMMAWKKPTKRG CEEHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MKSQWFGRSAAIGQYSTHTHFSVLGVLAFMLVAIALILLAALMGASLAIGFWPFAVALVG CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GVFVLGFYAVLGGRSGPGLRDSFFWLAFVLIFATDSLKKVTGYSANFVLEFSLILAAPLL HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH VPTLVRLLSESRFFKWWFAGLSVFFILSLLSSFFGRSHVFAAAFQFLTNLKFILILLLGF HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH YIVWSARTEAIFWWIVRWLWLPTAMLVAWQWGHPSSYFGLMPYATASADPLQLFPSRAVG HHHHHCCHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCC PFSHPTYLGLYMGVLTVFCVINAISGAGRRYFVIALCYFLLLLASAQRQETVAAIVAATA CCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH AVGLLHGKRFALRSAVIGLVTVLAVGGGAWLLIKDNLVQEATKWGVIGHSAIQQPRQVLY HHHHHHCHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHCCCCHHHHHCHHHEEH IHAVEIADQYAPLGSGLGTFAGAGAQKFDISLYLDRGFARYSWFYKQNVLMDTYWTNFLA HHHHHHHHHHCCCCCCCHHHHCCCCCEEEEEEEEECCHHHHHHHHHCCCHHHHHHHHHHH ETGWAGALLLLALTLLLVAFTAVNSLEKYPSEIRRFWLLAFGGMAFVFLLSLTSPSFQDP HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC GLFLVPGIFLGVAYNRMMAWKKPTKRG CEEHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA