| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317706
Identifier: 74317706
GI number: 74317706
Start: 1778665
End: 1779834
Strand: Reverse
Name: 74317706
Synonym: Tbd_1688
Alternate gene names: NA
Gene position: 1779834-1778665 (Counterclockwise)
Preceding gene: 74317707
Following gene: 74317705
Centisome position: 61.17
GC content: 62.39
Gene sequence:
>1170_bases GTGAGCAAAAACAAACTGTTTCGCAGTCTGGCTGTGGCCGGCCTGCTGTCGTGTTCAATGGCTGCAAACGCGGCCTACCC AGTGATCGACGCCTCTGTACTCAATGCCGTGAATACGGCGCGGACCGATATTGTCCGGATGCTGAAGTCGATCAACGACA CGATCCAGAAGACCGCGAAAAACATTCAGGACAACGCAATCCAGGTCGAGCGCGATTCCAACGCCCTCAAAGCCGAGCAA CAGCGCGGCGAACGATCGCTTCCCGAAAACCGTTGCGCCACGGGCGGCGTGGCCGAGGCAGTTGGAGCCGCGGGAAGTTC TGTAGTCAGAAACACCCGCGCCTATGGCGGTGCCGGCGCCTACGGCGGCCGCAACGCTAGGAATCCACTCGGTGGCGACA GGGGCCTTGAATCCAGGGTGAACGAAGCCCCGCACTCGCAGGCCGCGGCCGCGGCAACGGTGCTCGAAACGCACGCCAGC TACTGCAATTCGCGCGATGCAAGCGAGTACCCGAACCTATGCAGAGGCGCAGCCGCACTGCCCGACGCCGACGTCCAGGC CGCCAGTCTGTTTTATGGGGCCGGCAGCAAGAGGGACGAGCGCAGCTACACGTTCAACGCCAGGCAGATCGACGCGGCGA TGGCGTACCTGAAGAACGCGAACGACAGCATTCCTCCTAATCGCCTGACCGCGGCCGACGCCCGGAAGCCTTCCGGCCGT GCCTACCTGGCACTGCAAGCCGGCCTGGCGGCCAGCACCTCAATGGCGTATTTCCCGAGCGAGCTGGCTCTCGCCGAGCG TACTCCGCTGAGGGGCACCCAGGACGTGCTGCGCCTGCTGGAAAAGTCGAGTGCCTACCCGTCTGGCGGTCGCGGATTCG TTGATGCAAACGATTTCCCTGACGGTGTGTCGCGGATGGACCTGTTGCGCCTGGACGTGGCGCGCCGCTATGAAAACCCG AAATGGTATGTGGACGTGTCGGGCAATCCGGATTCGATCCAGAAGGAAGAGATCTTCATGCGGGCCTTGGCGCTCAACAT GCAGTTCCGCCAGATCGAGCAGATGGAGCGGATCGAAGTGCTGCTGGGCCAGCTCGTCGCCCGTGACGTGAACCGCGACC TCAAGCCGCGTCTGCAAGCGCAGTACCAATCTATCAAGGTGACCAAATGA
Upstream 100 bases:
>100_bases GCGGATATGGCGGCGGGGTCACGGCTGGGCAGAACGCGGGGGTCAATGTGAAGCCGACCGCGCCCACTTCATTGATCGAT CGTGTCATGGGGATTTTCCG
Downstream 100 bases:
>100_bases AAAGTCTTCTGCCCTTCCTCTCCAATCCCGGAGAGTGCCATTTCCTGACTATCGGTGGCGGCGTCGGCAGCGGCAAAACC CAGAGCATCCGTCCGCTGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 389; Mature: 388
Protein sequence:
>389_residues MSKNKLFRSLAVAGLLSCSMAANAAYPVIDASVLNAVNTARTDIVRMLKSINDTIQKTAKNIQDNAIQVERDSNALKAEQ QRGERSLPENRCATGGVAEAVGAAGSSVVRNTRAYGGAGAYGGRNARNPLGGDRGLESRVNEAPHSQAAAAATVLETHAS YCNSRDASEYPNLCRGAAALPDADVQAASLFYGAGSKRDERSYTFNARQIDAAMAYLKNANDSIPPNRLTAADARKPSGR AYLALQAGLAASTSMAYFPSELALAERTPLRGTQDVLRLLEKSSAYPSGGRGFVDANDFPDGVSRMDLLRLDVARRYENP KWYVDVSGNPDSIQKEEIFMRALALNMQFRQIEQMERIEVLLGQLVARDVNRDLKPRLQAQYQSIKVTK
Sequences:
>Translated_389_residues MSKNKLFRSLAVAGLLSCSMAANAAYPVIDASVLNAVNTARTDIVRMLKSINDTIQKTAKNIQDNAIQVERDSNALKAEQ QRGERSLPENRCATGGVAEAVGAAGSSVVRNTRAYGGAGAYGGRNARNPLGGDRGLESRVNEAPHSQAAAAATVLETHAS YCNSRDASEYPNLCRGAAALPDADVQAASLFYGAGSKRDERSYTFNARQIDAAMAYLKNANDSIPPNRLTAADARKPSGR AYLALQAGLAASTSMAYFPSELALAERTPLRGTQDVLRLLEKSSAYPSGGRGFVDANDFPDGVSRMDLLRLDVARRYENP KWYVDVSGNPDSIQKEEIFMRALALNMQFRQIEQMERIEVLLGQLVARDVNRDLKPRLQAQYQSIKVTK >Mature_388_residues SKNKLFRSLAVAGLLSCSMAANAAYPVIDASVLNAVNTARTDIVRMLKSINDTIQKTAKNIQDNAIQVERDSNALKAEQQ RGERSLPENRCATGGVAEAVGAAGSSVVRNTRAYGGAGAYGGRNARNPLGGDRGLESRVNEAPHSQAAAAATVLETHASY CNSRDASEYPNLCRGAAALPDADVQAASLFYGAGSKRDERSYTFNARQIDAAMAYLKNANDSIPPNRLTAADARKPSGRA YLALQAGLAASTSMAYFPSELALAERTPLRGTQDVLRLLEKSSAYPSGGRGFVDANDFPDGVSRMDLLRLDVARRYENPK WYVDVSGNPDSIQKEEIFMRALALNMQFRQIEQMERIEVLLGQLVARDVNRDLKPRLQAQYQSIKVTK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42110; Mature: 41979
Theoretical pI: Translated: 9.49; Mature: 9.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKNKLFRSLAVAGLLSCSMAANAAYPVIDASVLNAVNTARTDIVRMLKSINDTIQKTAK CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NIQDNAIQVERDSNALKAEQQRGERSLPENRCATGGVAEAVGAAGSSVVRNTRAYGGAGA HHHCCCEEEECCCCHHHHHHHHCCCCCCHHHCCCCCHHHHHHCCCHHHHHHHHCCCCCCC YGGRNARNPLGGDRGLESRVNEAPHSQAAAAATVLETHASYCNSRDASEYPNLCRGAAAL CCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC PDADVQAASLFYGAGSKRDERSYTFNARQIDAAMAYLKNANDSIPPNRLTAADARKPSGR CCCCHHHHHHHCCCCCCCCCCCEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC AYLALQAGLAASTSMAYFPSELALAERTPLRGTQDVLRLLEKSSAYPSGGRGFVDANDFP EEEEEECCCHHCCHHHHCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC DGVSRMDLLRLDVARRYENPKWYVDVSGNPDSIQKEEIFMRALALNMQFRQIEQMERIEV CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLGQLVARDVNRDLKPRLQAQYQSIKVTK HHHHHHHHHHCCCHHHHHHHHHHHCCCCC >Mature Secondary Structure SKNKLFRSLAVAGLLSCSMAANAAYPVIDASVLNAVNTARTDIVRMLKSINDTIQKTAK CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NIQDNAIQVERDSNALKAEQQRGERSLPENRCATGGVAEAVGAAGSSVVRNTRAYGGAGA HHHCCCEEEECCCCHHHHHHHHCCCCCCHHHCCCCCHHHHHHCCCHHHHHHHHCCCCCCC YGGRNARNPLGGDRGLESRVNEAPHSQAAAAATVLETHASYCNSRDASEYPNLCRGAAAL CCCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC PDADVQAASLFYGAGSKRDERSYTFNARQIDAAMAYLKNANDSIPPNRLTAADARKPSGR CCCCHHHHHHHCCCCCCCCCCCEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC AYLALQAGLAASTSMAYFPSELALAERTPLRGTQDVLRLLEKSSAYPSGGRGFVDANDFP EEEEEECCCHHCCHHHHCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC DGVSRMDLLRLDVARRYENPKWYVDVSGNPDSIQKEEIFMRALALNMQFRQIEQMERIEV CHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLGQLVARDVNRDLKPRLQAQYQSIKVTK HHHHHHHHHHCCCHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA