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The map label for this gene is traD [C]

Identifier: 74317705

GI number: 74317705

Start: 1776147

End: 1778501

Strand: Reverse

Name: traD [C]

Synonym: Tbd_1687

Alternate gene names: 74317705

Gene position: 1778501-1776147 (Counterclockwise)

Preceding gene: 74317706

Following gene: 74317704

Centisome position: 61.12

GC content: 61.61

Gene sequence:

>2355_bases
ATGACCGGCCAGGCGACCCGCAAAAGCAATCAGCCCACCGGCGCCGATCGCTGGGGCGCGCCGCTCTTTCTGGGCGGCCT
GGCTGGTGCGCTGGCCGCTGCCGGCCTTTACCTGGGCGGCTGGGGGTGGGTATTACAGTCTCAGGGCTTGGGCTTCCACG
TCGAACCCGCGCTGCATCATCTTCTTCCCGGTCGGCAGCTGGGAGATCGCCTGCACGACAAGACCGTGGCCTTCATGCAG
GCCGAGCACCCCGCTGCCCTGAAAGCCCTTGAAGTCGGGCCGCAGATCGCCGGCCTGCTGGCGGGTGGGCTTGTGTTTTG
GATGGTGTACGGCGATGTCGTCATTGCGACCCAGGACCGCCATATCCGAGGCCGGCGGCGCCTTAAAGGAGCGGCGGCAC
TTGCAGCGTGGGTGAAGGACGAAGGGGAGGCGGCGGACGGATTGCGTATCCATCCCAAGCTGCCCCCCATCTCGAAATCC
CGCGAGACCCGCCACATCCTGATCGTCGGCGGCGTCGGCAGCGGCAAAACACAGACGCTGCTTCCTTTGATGCGCGCCGC
GCGCGAGCGGGGCGACAGGGCGATTATTTTTGACTTCAAGGGTGACTTCACCCCCGATTTTCCGTCATGCACCGCGCGGC
ACAAGGGACGTGCGATCGAGGTTGAGGACGTGATTTTCGCACCATGGGATAGCCGATCCACGCTTTGGGCTGTTGCGCGT
GATGTGGACACCTTGTCTGCCGCGCGCGAGTTCGCCGCGCGCATGATCGTCGAGCCCGGCGGGGGTAGCGGCTCGCCCAT
GTGGGCAAACGCCGCGCGGCAGGTGCTGGTCGCTTGCCTCGTCGAGTTGCAATCAACCAAGCCAGGCGACTGGGGTTTTG
CCGACCTGGTTGCGGGACTCACTCGCCCGGTTGACCAGTTGACCGAAGCGGCCAGACGCTACTTCCCCGAGGCAGTGAAA
GCGCTCGGCGACGGCCAGCAGAACGTCACGACAGCCGGCATTCAGATCAATCTGATGTCTTACCTCGCGGTCATCTTTGA
CTTGGCGCGAGCTTGGCCTGGGCCTGGGATTTTTAGCATTCGTGAATGGCTCACCGAGGTTGGGGCGCGGCGCGTAAAAA
CCGTGATCCTCCAGCACGACGGGCGCTTCGAGACCCTTGCCCGCGCTTTCAACAGTGCCGTACTTGGGCTCGCCGGCCAG
TTGATCAAGTCCAACTTGGTTCGTGATTCGAAGGAAAGAAAACTTTGGTTATTCCTGGATGAGTTCCCTGAGTTGGGGAA
GGTGGAAACGGTCCTCTCGCTTGCCGCGGTCGGACGTAGCAAGGGAATACGAGTGGTACTCGGTTTACAGGACATCAGCC
AGGTTAAAAAGATCTATTCCGAGCACGATACAAACTCAATTGTCTCGATGGTTGGCACCCAGGTTATCGCTCAAGTCTCC
CCGGGGGAGACGGCCAAGTACATCGCGGAAAATCTGATCGGCGATCGCGACCTAGAGCGGCTTGGCGTGTCTATAACCAG
CGGTGCAGGACGCGCTCCCGGAATTTTCACGTCTGGTGGCAATCGCACATCGAAATGGGAGGATAAGCGCGAGCTGGTGG
TGTTGCCCAGCGAACTCTTGCAGCTTGGCCCTGATCTTGATTTGGGCGGCGTCAAAGTGTGGATGTCGGGGATTGGCGAG
GACGTGCTTGAAGTCCTGATTCCGTTTTCCGATCCCAACCATTTTCGTCCGTCCAGCGTGATCGCTGACTGGACGCGCTA
CCCGAATCAGCCGATTGCGCCTGCTGTTGCCACCCCTGCGCAGGAACCATCTCAGCCCGTGCCCTCATGGGCTGAAGAAG
CAGCAGAGGCAGACGTCGCGCCGTTACTAGTAACGCCAACTTCACCAGCAGTAACGCCAGTCGCGAATCCCTGGGCGGAC
GACATCGACGGCGACGAAGCCGGCGAAGGCGAAGAGTCTGCGCCTGCTCCCGAGACCACGACCGCCACCGATCCGCTGGC
CTTCCTTGACGACGGCGAGTCCACAGAAAAAACGGCAGCCGCTGAGTTCGAAACCCGCATGCTGCCCATTGCCACCCCAC
TGTCCAGCCAACTGGCCGACCAGGCCAAGGAAGAAGCGACGGAAAGCATTGCGGGCGAGCTCGCTCAACAAGTCGGCATC
GCAGCGCTGCCATCAGGCATCGCCGAAATCGCCCACGCCGTGGAAATCGCGGACACGCTCCTCGACCTTGGCGCCAGCGC
CGCCATGCCGCCGACCGAGGTATTACCAGTAACGGAGGCCGGGGTTCAGCCTCCACGAAAGAAAAAAATCCGCCTAAAGA
AATCCGCCACAGCCCAGCTTGAGGAGAGTATCTGA

Upstream 100 bases:

>100_bases
TCGGCAGCGGCAAAACCCAGAGCATCCGTCCGCTGCTGCGCGCTGCGCGAGAGCGGTGCGACCTAAAACCTCAACCTCAG
CAAGCGCGCAAGACCGCCAA

Downstream 100 bases:

>100_bases
TGCTATCAGTTTCAGTCATTGGTGCCGGCAGCGAAGCTGCTGGCTATGCCGCCTATCAAGAAAATGAAGTCGCTGCGGCG
CAGCGTGAGGACTACTACGC

Product: putative type IV secretory pathway VirD4 components

Products: NA

Alternate protein names: Type IV Conjugative Transfer System Coupling Protein TraD; Conjugal Transfer Protein TraD; Conjugative Transfer Protein TraD; Type IV Secretory Pathway VirD4 Component; TraD Protein; Type IV Secretory Pathway VirD4 Components; Conjugative Transfer Protein; Plasmid Transfer Protein TraB; VirD4/TraD-Like Protein; Type IV Secretion System; Type IV Secretory Pathway VirD4 Protein-Like Protein; Conjugal DNA Metabolism; Type IV Secretory Protein Conjugation Protein TraD; TraB Protein; Type IV Secretory Pathway Protein; TRAG Family Protein; Incf Plasmid Conjugative Transfer Protein Trad; Type Iv Secretory Pathway Vird4 Component

Number of amino acids: Translated: 784; Mature: 783

Protein sequence:

>784_residues
MTGQATRKSNQPTGADRWGAPLFLGGLAGALAAAGLYLGGWGWVLQSQGLGFHVEPALHHLLPGRQLGDRLHDKTVAFMQ
AEHPAALKALEVGPQIAGLLAGGLVFWMVYGDVVIATQDRHIRGRRRLKGAAALAAWVKDEGEAADGLRIHPKLPPISKS
RETRHILIVGGVGSGKTQTLLPLMRAARERGDRAIIFDFKGDFTPDFPSCTARHKGRAIEVEDVIFAPWDSRSTLWAVAR
DVDTLSAAREFAARMIVEPGGGSGSPMWANAARQVLVACLVELQSTKPGDWGFADLVAGLTRPVDQLTEAARRYFPEAVK
ALGDGQQNVTTAGIQINLMSYLAVIFDLARAWPGPGIFSIREWLTEVGARRVKTVILQHDGRFETLARAFNSAVLGLAGQ
LIKSNLVRDSKERKLWLFLDEFPELGKVETVLSLAAVGRSKGIRVVLGLQDISQVKKIYSEHDTNSIVSMVGTQVIAQVS
PGETAKYIAENLIGDRDLERLGVSITSGAGRAPGIFTSGGNRTSKWEDKRELVVLPSELLQLGPDLDLGGVKVWMSGIGE
DVLEVLIPFSDPNHFRPSSVIADWTRYPNQPIAPAVATPAQEPSQPVPSWAEEAAEADVAPLLVTPTSPAVTPVANPWAD
DIDGDEAGEGEESAPAPETTTATDPLAFLDDGESTEKTAAAEFETRMLPIATPLSSQLADQAKEEATESIAGELAQQVGI
AALPSGIAEIAHAVEIADTLLDLGASAAMPPTEVLPVTEAGVQPPRKKKIRLKKSATAQLEESI

Sequences:

>Translated_784_residues
MTGQATRKSNQPTGADRWGAPLFLGGLAGALAAAGLYLGGWGWVLQSQGLGFHVEPALHHLLPGRQLGDRLHDKTVAFMQ
AEHPAALKALEVGPQIAGLLAGGLVFWMVYGDVVIATQDRHIRGRRRLKGAAALAAWVKDEGEAADGLRIHPKLPPISKS
RETRHILIVGGVGSGKTQTLLPLMRAARERGDRAIIFDFKGDFTPDFPSCTARHKGRAIEVEDVIFAPWDSRSTLWAVAR
DVDTLSAAREFAARMIVEPGGGSGSPMWANAARQVLVACLVELQSTKPGDWGFADLVAGLTRPVDQLTEAARRYFPEAVK
ALGDGQQNVTTAGIQINLMSYLAVIFDLARAWPGPGIFSIREWLTEVGARRVKTVILQHDGRFETLARAFNSAVLGLAGQ
LIKSNLVRDSKERKLWLFLDEFPELGKVETVLSLAAVGRSKGIRVVLGLQDISQVKKIYSEHDTNSIVSMVGTQVIAQVS
PGETAKYIAENLIGDRDLERLGVSITSGAGRAPGIFTSGGNRTSKWEDKRELVVLPSELLQLGPDLDLGGVKVWMSGIGE
DVLEVLIPFSDPNHFRPSSVIADWTRYPNQPIAPAVATPAQEPSQPVPSWAEEAAEADVAPLLVTPTSPAVTPVANPWAD
DIDGDEAGEGEESAPAPETTTATDPLAFLDDGESTEKTAAAEFETRMLPIATPLSSQLADQAKEEATESIAGELAQQVGI
AALPSGIAEIAHAVEIADTLLDLGASAAMPPTEVLPVTEAGVQPPRKKKIRLKKSATAQLEESI
>Mature_783_residues
TGQATRKSNQPTGADRWGAPLFLGGLAGALAAAGLYLGGWGWVLQSQGLGFHVEPALHHLLPGRQLGDRLHDKTVAFMQA
EHPAALKALEVGPQIAGLLAGGLVFWMVYGDVVIATQDRHIRGRRRLKGAAALAAWVKDEGEAADGLRIHPKLPPISKSR
ETRHILIVGGVGSGKTQTLLPLMRAARERGDRAIIFDFKGDFTPDFPSCTARHKGRAIEVEDVIFAPWDSRSTLWAVARD
VDTLSAAREFAARMIVEPGGGSGSPMWANAARQVLVACLVELQSTKPGDWGFADLVAGLTRPVDQLTEAARRYFPEAVKA
LGDGQQNVTTAGIQINLMSYLAVIFDLARAWPGPGIFSIREWLTEVGARRVKTVILQHDGRFETLARAFNSAVLGLAGQL
IKSNLVRDSKERKLWLFLDEFPELGKVETVLSLAAVGRSKGIRVVLGLQDISQVKKIYSEHDTNSIVSMVGTQVIAQVSP
GETAKYIAENLIGDRDLERLGVSITSGAGRAPGIFTSGGNRTSKWEDKRELVVLPSELLQLGPDLDLGGVKVWMSGIGED
VLEVLIPFSDPNHFRPSSVIADWTRYPNQPIAPAVATPAQEPSQPVPSWAEEAAEADVAPLLVTPTSPAVTPVANPWADD
IDGDEAGEGEESAPAPETTTATDPLAFLDDGESTEKTAAAEFETRMLPIATPLSSQLADQAKEEATESIAGELAQQVGIA
ALPSGIAEIAHAVEIADTLLDLGASAAMPPTEVLPVTEAGVQPPRKKKIRLKKSATAQLEESI

Specific function: Trad Is A Cell Envelope Protein. The Function Of Trad Is Unknown But It Is Essential For DNA Transfer. It May Form Or May Be Part Of A Non-Specific Pore For DNA Export, Or It May Directly Energizes DNA Transport. [C]

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 83757; Mature: 83626

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGQATRKSNQPTGADRWGAPLFLGGLAGALAAAGLYLGGWGWVLQSQGLGFHVEPALHH
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHEEECCCCCEEECHHHHH
LLPGRQLGDRLHDKTVAFMQAEHPAALKALEVGPQIAGLLAGGLVFWMVYGDVVIATQDR
HCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEEECCC
HIRGRRRLKGAAALAAWVKDEGEAADGLRIHPKLPPISKSRETRHILIVGGVGSGKTQTL
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHH
LPLMRAARERGDRAIIFDFKGDFTPDFPSCTARHKGRAIEVEDVIFAPWDSRSTLWAVAR
HHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHCCCCEEEECCEEECCCCCCCHHHHHHH
DVDTLSAAREFAARMIVEPGGGSGSPMWANAARQVLVACLVELQSTKPGDWGFADLVAGL
HHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
TRPVDQLTEAARRYFPEAVKALGDGQQNVTTAGIQINLMSYLAVIFDLARAWPGPGIFSI
HCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECEEEHHHHHHHHHHHHHHHCCCCCHHHH
REWLTEVGARRVKTVILQHDGRFETLARAFNSAVLGLAGQLIKSNLVRDSKERKLWLFLD
HHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
EFPELGKVETVLSLAAVGRSKGIRVVLGLQDISQVKKIYSEHDTNSIVSMVGTQVIAQVS
CCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
PGETAKYIAENLIGDRDLERLGVSITSGAGRAPGIFTSGGNRTSKWEDKRELVVLPSELL
CCHHHHHHHHHHCCCCCHHHHCCEEECCCCCCCCEEECCCCCCCCCCCCCCEEEECHHHH
QLGPDLDLGGVKVWMSGIGEDVLEVLIPFSDPNHFRPSSVIADWTRYPNQPIAPAVATPA
HCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
QEPSQPVPSWAEEAAEADVAPLLVTPTSPAVTPVANPWADDIDGDEAGEGEESAPAPETT
CCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TATDPLAFLDDGESTEKTAAAEFETRMLPIATPLSSQLADQAKEEATESIAGELAQQVGI
CCCCCEEEECCCCCCHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCH
AALPSGIAEIAHAVEIADTLLDLGASAAMPPTEVLPVTEAGVQPPRKKKIRLKKSATAQL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCHHHHEEHHHHHHHHH
EESI
HHCC
>Mature Secondary Structure 
TGQATRKSNQPTGADRWGAPLFLGGLAGALAAAGLYLGGWGWVLQSQGLGFHVEPALHH
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHEEECCCCCEEECHHHHH
LLPGRQLGDRLHDKTVAFMQAEHPAALKALEVGPQIAGLLAGGLVFWMVYGDVVIATQDR
HCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCEEEEECCC
HIRGRRRLKGAAALAAWVKDEGEAADGLRIHPKLPPISKSRETRHILIVGGVGSGKTQTL
HHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHH
LPLMRAARERGDRAIIFDFKGDFTPDFPSCTARHKGRAIEVEDVIFAPWDSRSTLWAVAR
HHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHCCCCEEEECCEEECCCCCCCHHHHHHH
DVDTLSAAREFAARMIVEPGGGSGSPMWANAARQVLVACLVELQSTKPGDWGFADLVAGL
HHHHHHHHHHHHHHHEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
TRPVDQLTEAARRYFPEAVKALGDGQQNVTTAGIQINLMSYLAVIFDLARAWPGPGIFSI
HCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECEEEHHHHHHHHHHHHHHHCCCCCHHHH
REWLTEVGARRVKTVILQHDGRFETLARAFNSAVLGLAGQLIKSNLVRDSKERKLWLFLD
HHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
EFPELGKVETVLSLAAVGRSKGIRVVLGLQDISQVKKIYSEHDTNSIVSMVGTQVIAQVS
CCCCCCHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCC
PGETAKYIAENLIGDRDLERLGVSITSGAGRAPGIFTSGGNRTSKWEDKRELVVLPSELL
CCHHHHHHHHHHCCCCCHHHHCCEEECCCCCCCCEEECCCCCCCCCCCCCCEEEECHHHH
QLGPDLDLGGVKVWMSGIGEDVLEVLIPFSDPNHFRPSSVIADWTRYPNQPIAPAVATPA
HCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
QEPSQPVPSWAEEAAEADVAPLLVTPTSPAVTPVANPWADDIDGDEAGEGEESAPAPETT
CCCCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TATDPLAFLDDGESTEKTAAAEFETRMLPIATPLSSQLADQAKEEATESIAGELAQQVGI
CCCCCEEEECCCCCCHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCH
AALPSGIAEIAHAVEIADTLLDLGASAAMPPTEVLPVTEAGVQPPRKKKIRLKKSATAQL
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCHHHHEEHHHHHHHHH
EESI
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA