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The map label for this gene is rci [H]

Identifier: 74317697

GI number: 74317697

Start: 1767440

End: 1768510

Strand: Direct

Name: rci [H]

Synonym: Tbd_1679

Alternate gene names: 74317697

Gene position: 1767440-1768510 (Clockwise)

Preceding gene: 74317690

Following gene: 74317699

Centisome position: 60.74

GC content: 60.88

Gene sequence:

>1071_bases
ATGAATTCTAGCGTGAATGCAAAAACCCGGAAACCTACGGCCAAAGCCCGCGATGGGGTCAAGGTCGAGAAGAACATTTA
CCGGCGAGGGGAGTACAGCTACCAGGTAAAGATGATGTTTGGCGGCCATGCCGTCGTGGAAACCTTCGACACCCTGCCAG
AGGCTCGCGCCTTCCGGGACAGCAAAAAAGCAGCAAGCGTCATTGACCCGGACTTCAAGCGGGTGCTGGAGAGCCGCATC
AAGAAGACCGAGGCGGCCAGTTCAAGCCTGGGCTGGCTGCTCAATCGGTATGAAGCGGAAGTCACCTCGGGGAAGAAAAG
CGCTACATCCGAGCGCTACCGGATAGGCAAGCTGAAGCGGTACCGCATCGCCGGGCTCAGTATCTACACCATCAGTGCTG
ACGATGTGGCCGAGTTCCTTGGCGATCTCAAGGCTGACGGCGTGGCCTCTCCAGGTCAGCGCAAATACTGCGCCCTCCTT
TCACACGTCTTCAATACGGCCGCAAAGCGCTGGCGGCTGAAGGTATCGAACCCGATCACCAGCCTGGAACTTCCTGCCGG
CGGCAAGGCTCGCGATCGCCGCCTAGAACCGGGTGAGGCCGACACGCTGCTTGCTGAACTGGACAAGGAAAACGCCTACG
CCGGTGCCTATGCTCGCCTCGGCATCGAGACCGCCATGCGTCGAGGCGAGCTGCTTGGCCTGGCGTGGGACGACGTGGAT
CTGAAAAACAGGGTGGCCGAGCTGCGCGACACCAAGAATGGCGAGGGCCGGCGCGTGCCGCTATCCAGGGCGGCAATCAA
GGTCCTGCGCGCCCTCCCCCGCCCTCATAAGGGCCCCGTTCTCCCCATTGGGGCTTCCGCCTTACGCGGCGCTTGGGGTC
GGGCGAAAGAGAAGGTGGGGATCAAGGATTTGAGGATCCACGACCTGCGGCACGAGGCCACCTCGCGCCTGTTTGAGAAA
GGCGTGTTTGACAGCATGGAAGTCGCCAGCATCACCGGTCACAAGACCTTACAAATGCTCAAACGGTACACGCACCTACG
GGCCGAGGATCTGGCGAAGAAGCTGGGTTAG

Upstream 100 bases:

>100_bases
CGTTTTGGTTTTTCGCTTTAATTACAATTAATTAAAAAATCACCACTCGAATTTTCGGGAAAATACGGGAAAATCCGGGG
GTCCGAGAAAACTAAAGGCC

Downstream 100 bases:

>100_bases
AAAGGTGTCGCGTCAGGGCTCGAGAGCACTGCGAATGGCCTCCCTAACCTTCGGCTCCACCTTGCTACTTTTCGACTTCA
GAAGGGCGCGCGCCGCCTCT

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 356; Mature: 356

Protein sequence:

>356_residues
MNSSVNAKTRKPTAKARDGVKVEKNIYRRGEYSYQVKMMFGGHAVVETFDTLPEARAFRDSKKAASVIDPDFKRVLESRI
KKTEAASSSLGWLLNRYEAEVTSGKKSATSERYRIGKLKRYRIAGLSIYTISADDVAEFLGDLKADGVASPGQRKYCALL
SHVFNTAAKRWRLKVSNPITSLELPAGGKARDRRLEPGEADTLLAELDKENAYAGAYARLGIETAMRRGELLGLAWDDVD
LKNRVAELRDTKNGEGRRVPLSRAAIKVLRALPRPHKGPVLPIGASALRGAWGRAKEKVGIKDLRIHDLRHEATSRLFEK
GVFDSMEVASITGHKTLQMLKRYTHLRAEDLAKKLG

Sequences:

>Translated_356_residues
MNSSVNAKTRKPTAKARDGVKVEKNIYRRGEYSYQVKMMFGGHAVVETFDTLPEARAFRDSKKAASVIDPDFKRVLESRI
KKTEAASSSLGWLLNRYEAEVTSGKKSATSERYRIGKLKRYRIAGLSIYTISADDVAEFLGDLKADGVASPGQRKYCALL
SHVFNTAAKRWRLKVSNPITSLELPAGGKARDRRLEPGEADTLLAELDKENAYAGAYARLGIETAMRRGELLGLAWDDVD
LKNRVAELRDTKNGEGRRVPLSRAAIKVLRALPRPHKGPVLPIGASALRGAWGRAKEKVGIKDLRIHDLRHEATSRLFEK
GVFDSMEVASITGHKTLQMLKRYTHLRAEDLAKKLG
>Mature_356_residues
MNSSVNAKTRKPTAKARDGVKVEKNIYRRGEYSYQVKMMFGGHAVVETFDTLPEARAFRDSKKAASVIDPDFKRVLESRI
KKTEAASSSLGWLLNRYEAEVTSGKKSATSERYRIGKLKRYRIAGLSIYTISADDVAEFLGDLKADGVASPGQRKYCALL
SHVFNTAAKRWRLKVSNPITSLELPAGGKARDRRLEPGEADTLLAELDKENAYAGAYARLGIETAMRRGELLGLAWDDVD
LKNRVAELRDTKNGEGRRVPLSRAAIKVLRALPRPHKGPVLPIGASALRGAWGRAKEKVGIKDLRIHDLRHEATSRLFEK
GVFDSMEVASITGHKTLQMLKRYTHLRAEDLAKKLG

Specific function: Shufflon-specific DNA recombinase [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=218, Percent_Identity=26.605504587156, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 39573; Mature: 39573

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSVNAKTRKPTAKARDGVKVEKNIYRRGEYSYQVKMMFGGHAVVETFDTLPEARAFRD
CCCCCCCCCCCCCHHHCCCCCHHHHHHHCCCCEEEEEEEECCHHHHHHHHHCHHHHHHHH
SKKAASVIDPDFKRVLESRIKKTEAASSSLGWLLNRYEAEVTSGKKSATSERYRIGKLKR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCHHHHHHHCHHE
YRIAGLSIYTISADDVAEFLGDLKADGVASPGQRKYCALLSHVFNTAAKRWRLKVSNPIT
EEEECEEEEEECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCC
SLELPAGGKARDRRLEPGEADTLLAELDKENAYAGAYARLGIETAMRRGELLGLAWDDVD
EEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
LKNRVAELRDTKNGEGRRVPLSRAAIKVLRALPRPHKGPVLPIGASALRGAWGRAKEKVG
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHCC
IKDLRIHDLRHEATSRLFEKGVFDSMEVASITGHKTLQMLKRYTHLRAEDLAKKLG
CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNSSVNAKTRKPTAKARDGVKVEKNIYRRGEYSYQVKMMFGGHAVVETFDTLPEARAFRD
CCCCCCCCCCCCCHHHCCCCCHHHHHHHCCCCEEEEEEEECCHHHHHHHHHCHHHHHHHH
SKKAASVIDPDFKRVLESRIKKTEAASSSLGWLLNRYEAEVTSGKKSATSERYRIGKLKR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCHHHHHHHCHHE
YRIAGLSIYTISADDVAEFLGDLKADGVASPGQRKYCALLSHVFNTAAKRWRLKVSNPIT
EEEECEEEEEECHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCC
SLELPAGGKARDRRLEPGEADTLLAELDKENAYAGAYARLGIETAMRRGELLGLAWDDVD
EEECCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC
LKNRVAELRDTKNGEGRRVPLSRAAIKVLRALPRPHKGPVLPIGASALRGAWGRAKEKVG
HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHHHHHHHHCC
IKDLRIHDLRHEATSRLFEKGVFDSMEVASITGHKTLQMLKRYTHLRAEDLAKKLG
CHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3065610; 3029698 [H]