| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317675
Identifier: 74317675
GI number: 74317675
Start: 1741802
End: 1743037
Strand: Direct
Name: 74317675
Synonym: Tbd_1657
Alternate gene names: NA
Gene position: 1741802-1743037 (Clockwise)
Preceding gene: 74317674
Following gene: 74317676
Centisome position: 59.86
GC content: 69.17
Gene sequence:
>1236_bases ATGAGCCTGATCCAACCCTTCGCCGCCCTCCGTCCCGCCCCCGGTCGCGCCAACGACGTCGTCGCCCCGCCCTACGACGT GCTCTCGACCGAGGAGGCGCGCCAGCGCGCGAGCGGTCGCCCATGGAGCTTCCTGCATATTTCCAAGCCGGAAATCGACC TCGCGCCGGGCACCGATCCCTACGCGCCCGAGGTCTACGCCAAGGGTGCGGAGAACCTGCGCGCGATGATCGCCGCTGGT GTGCTGGCGCGGGATCCGGCGCCCTGCTACTACGCCTACCGTATCGTGATGGGCACGCACAGCCAGACCGGGCTCGTCGC CGCCGCCTCGGTCGCCGATTACAATACCAACCGCATCCGCAAGCACGAGTTCACCCGCCCCGACAAGGAAGATGACCGCG TGCGCCAGATCGATGCGCTCGATGCGCAGACCGGGCCGGTGCTGCTGGCCTACCCGGAGGCATCCGAGGTCGACGCCATC CTCGCCGCCGCAGCGGCCGGCACGCCCGACTCCGACGCCGAACTCGACGGCGTCCGCCACACCCTCTGGGCGATCCGCGA CACGACCGCGCAGGCGCGCCTCACCACCGCGTTCGACGCCATGCGCGCGCTCTACATCGCCGATGGCCATCACCGCTCGG CCTCGGCCTCGCGCATCGCCGCCGCGCGCCGCGCTGCCAACCCCGGCCACAGCGGCACCGAGCCCTACAACTTCTTCCTG TCGGTGATCTTCCCCGCGCATGAGATGCGGATCATGGACTACAACCGCGTCATCGCCGACCTCAACGGCCTTTCCGCCGA CGCCTTCCTGGCGACGATCGCCGGTGCCTTCGACGTCGAACCGGCCGCCGCCGCGGTGACGCCCGAGCGCCCGGGCGAAT TCGGTCTCTACCTCGCGGGCAAGTGGTATCGCCTCGCCATCCGTCCCGAACTCGTGCCGGCCGACCCGGTCGGACGCCTC GACGTCAGCCTGCTGCAGAACAACCTGATCGCGCCCGTCCTCGGCATCGTCGATCCGCGGCGCGACAAGCGCATCGACTT CGTCGGCGGCATCCGCGGCCTGGCCGAACTGGAAAAGCGCGTCGACAGCGGCGACATGGCGCTTGCGTTCTCGCTGCATC CCACACGCATGGAAGACTTGATGGCCGTCGCCGACGCCAACGAAGTCATGCCGCCGAAGTCGACCTGGTTCGAACCCAAG CTCGCCGATGGTATGGCCTCGCATGTGCTAGGGTGA
Upstream 100 bases:
>100_bases TGCCTGACCTTGCCAGGCGGGTCGGCGCGGTCAACGCCTTCCTCGCCGCGCTCGGCCCGCCCGTGGGCGACTCCCTTTCA TCCGCAACCCATCATTCCTC
Downstream 100 bases:
>100_bases ACTTCGGCTAAGGTTTTCGGCCCAAATGCCGTATCCACAGCTAAGTTGCATTCATTCCGGAAAAACAGCTCACAGGATCC CCGCTCGTGAAAATCGACAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 411; Mature: 410
Protein sequence:
>411_residues MSLIQPFAALRPAPGRANDVVAPPYDVLSTEEARQRASGRPWSFLHISKPEIDLAPGTDPYAPEVYAKGAENLRAMIAAG VLARDPAPCYYAYRIVMGTHSQTGLVAAASVADYNTNRIRKHEFTRPDKEDDRVRQIDALDAQTGPVLLAYPEASEVDAI LAAAAAGTPDSDAELDGVRHTLWAIRDTTAQARLTTAFDAMRALYIADGHHRSASASRIAAARRAANPGHSGTEPYNFFL SVIFPAHEMRIMDYNRVIADLNGLSADAFLATIAGAFDVEPAAAAVTPERPGEFGLYLAGKWYRLAIRPELVPADPVGRL DVSLLQNNLIAPVLGIVDPRRDKRIDFVGGIRGLAELEKRVDSGDMALAFSLHPTRMEDLMAVADANEVMPPKSTWFEPK LADGMASHVLG
Sequences:
>Translated_411_residues MSLIQPFAALRPAPGRANDVVAPPYDVLSTEEARQRASGRPWSFLHISKPEIDLAPGTDPYAPEVYAKGAENLRAMIAAG VLARDPAPCYYAYRIVMGTHSQTGLVAAASVADYNTNRIRKHEFTRPDKEDDRVRQIDALDAQTGPVLLAYPEASEVDAI LAAAAAGTPDSDAELDGVRHTLWAIRDTTAQARLTTAFDAMRALYIADGHHRSASASRIAAARRAANPGHSGTEPYNFFL SVIFPAHEMRIMDYNRVIADLNGLSADAFLATIAGAFDVEPAAAAVTPERPGEFGLYLAGKWYRLAIRPELVPADPVGRL DVSLLQNNLIAPVLGIVDPRRDKRIDFVGGIRGLAELEKRVDSGDMALAFSLHPTRMEDLMAVADANEVMPPKSTWFEPK LADGMASHVLG >Mature_410_residues SLIQPFAALRPAPGRANDVVAPPYDVLSTEEARQRASGRPWSFLHISKPEIDLAPGTDPYAPEVYAKGAENLRAMIAAGV LARDPAPCYYAYRIVMGTHSQTGLVAAASVADYNTNRIRKHEFTRPDKEDDRVRQIDALDAQTGPVLLAYPEASEVDAIL AAAAAGTPDSDAELDGVRHTLWAIRDTTAQARLTTAFDAMRALYIADGHHRSASASRIAAARRAANPGHSGTEPYNFFLS VIFPAHEMRIMDYNRVIADLNGLSADAFLATIAGAFDVEPAAAAVTPERPGEFGLYLAGKWYRLAIRPELVPADPVGRLD VSLLQNNLIAPVLGIVDPRRDKRIDFVGGIRGLAELEKRVDSGDMALAFSLHPTRMEDLMAVADANEVMPPKSTWFEPKL ADGMASHVLG
Specific function: Unknown
COG id: COG4198
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44444; Mature: 44313
Theoretical pI: Translated: 5.44; Mature: 5.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLIQPFAALRPAPGRANDVVAPPYDVLSTEEARQRASGRPWSFLHISKPEIDLAPGTDP CCCCCCHHHHCCCCCCCCCCCCCCHHHCCCHHHHHHHCCCCEEEEEECCCCEEECCCCCC YAPEVYAKGAENLRAMIAAGVLARDPAPCYYAYRIVMGTHSQTGLVAAASVADYNTNRIR CCCHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEEEHHCCCCCCCC KHEFTRPDKEDDRVRQIDALDAQTGPVLLAYPEASEVDAILAAAAAGTPDSDAELDGVRH CCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHH TLWAIRDTTAQARLTTAFDAMRALYIADGHHRSASASRIAAARRAANPGHSGTEPYNFFL HHHHHHCCCHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHE SVIFPAHEMRIMDYNRVIADLNGLSADAFLATIAGAFDVEPAAAAVTPERPGEFGLYLAG EEEECHHHEEEEHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCEEEEEEC KWYRLAIRPELVPADPVGRLDVSLLQNNLIAPVLGIVDPRRDKRIDFVGGIRGLAELEKR CEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH VDSGDMALAFSLHPTRMEDLMAVADANEVMPPKSTWFEPKLADGMASHVLG CCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure SLIQPFAALRPAPGRANDVVAPPYDVLSTEEARQRASGRPWSFLHISKPEIDLAPGTDP CCCCCHHHHCCCCCCCCCCCCCCHHHCCCHHHHHHHCCCCEEEEEECCCCEEECCCCCC YAPEVYAKGAENLRAMIAAGVLARDPAPCYYAYRIVMGTHSQTGLVAAASVADYNTNRIR CCCHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCEEEEEEHHCCCCCCCC KHEFTRPDKEDDRVRQIDALDAQTGPVLLAYPEASEVDAILAAAAAGTPDSDAELDGVRH CCCCCCCCCCCHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHH TLWAIRDTTAQARLTTAFDAMRALYIADGHHRSASASRIAAARRAANPGHSGTEPYNFFL HHHHHHCCCHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHE SVIFPAHEMRIMDYNRVIADLNGLSADAFLATIAGAFDVEPAAAAVTPERPGEFGLYLAG EEEECHHHEEEEHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCEECCCCCCCCEEEEEEC KWYRLAIRPELVPADPVGRLDVSLLQNNLIAPVLGIVDPRRDKRIDFVGGIRGLAELEKR CEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH VDSGDMALAFSLHPTRMEDLMAVADANEVMPPKSTWFEPKLADGMASHVLG CCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA