| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is ytxB [H]
Identifier: 74317492
GI number: 74317492
Start: 1559811
End: 1561955
Strand: Reverse
Name: ytxB [H]
Synonym: Tbd_1474
Alternate gene names: 74317492
Gene position: 1561955-1559811 (Counterclockwise)
Preceding gene: 74317493
Following gene: 74317491
Centisome position: 53.68
GC content: 68.62
Gene sequence:
>2145_bases GTGGCGCGCACCCGGGCAATGGGCAGGCTAGTCGAAGGAAAAAACTGCTGGCGTTACGAACATGCGAACCGAGTCGCCTT CCTCGTCGACGGCGCGGCCTACTTCGACGCGTTCGGCCGTGCTGCGTTGCGCGCGCAGCGCTCGATCCTGATCGTCGGCT GGGATTTCAACAGCCGCACGCGCCTGTGGCACGACGACGCGCCACGCGGCGTGCCGCCGGTGCTCGGCGACTTCCTGGAT TTTCTCGTCAAGCGCAATCACGCGCTGCAGGTCCACATCCTCGACTGGGATTTTCCGATGATCTACGCGGTCGACCGCGA GGCGCCGCCGCTCTTCGGACTCGGCTGGCAGCCGCGTCATCACATCCATTTTCATTTCGACAGCCATTTCCCGGTCGGCG GATCGCATCATCAGAAGATCGTCGTGATCGACGACGCGGTCGCCTTCGTCGGCGGCATCGATCTCGCGGCGGACCGCTGG GACACGCCCGAGCACCGCGCCGACGACCCGCGCCGCATGCGCGGCGACGCCGCCTACGGCCCGGTGCACGACGTGATGAT CGCGGTCGACGGCGACGCAGCCGCTGCGCTCGGCGATCTCGCTCGCACGCGCTGGCTGCGCGGAACCGGCGAGCGGCTTC ATGCCCACCCCGGCGAAGGTGATCCGTGGCCGGCGGAACTCGCGCCCGAGCTCGTCGACGTGCACGTCGGGATCGCGCGC ACCGAACCCGAGTACGACGGCCTGCCCGAGGTGCGCGAGGTCGAGGCGCTGTATCTCGACATGCTCGACGCGGCGAAAAA GCTGATCTACATCGAGAACCAGTATTTCACGTCGCTGCGCGTCGGCGCCTGGCTCGAGGAACGGCTGCGCTGCGAAGACT GCCCGGAAATCGTGATCGTGCTGCGGCGCTCGTCCGACGGCTGGCTCGAAGGGCCGACGATGGGCACGCTGCGCAGCCAG CTGCTCGAACGCCTGCGCCGCGCCGACCACCATGGCCGGCTGCACGTCTACTATCCCGACGTGCCGGGCCTCGGCGAGCG CAGCATCAACGTGCATGCCAAGCTGTGTATCGTCGACGATGAGATCGTGCGCGTCGGCTCGGCGAATCTCAACAATCGCT CGATGGGTTTCGACACCGAATGCGATCTCGCGATCGAGGCCGAGGGCAATGCGAATGTGCGTGCGGCGATCGCCGCGTTC CGCGACCGGCTGCTCGCCGAACATCTCGACGTCAGCCCGCGCGAGGTCGCCGCCGCGTTCGAGCGCGAAGCGACCGCGGC CAAGGCCGTCGACGCGCTGGCACACGGCGAGCGGCGCCTGCTGCCCTTGAGCTCCGACGTCTGGTCCAGTTCGCTCGCGC CGCTCGCCGAACTTGCCGATCTCGAGCGACCGGTCGCTCCGGAAGAGCTGATCAGCCAGTTCTCTCCTGACGCCCCGGTC GACGAAAAACGCGGGCGGCCGCTGCTCGGCGTGCTCGTGGTGCTCGTGGTTTTCGGCGGCCTGTTTGCGCTCTGGCGCTG GACCCCGCTGTCCGAATACGTCACGCCGACTGCCGTCGCCGGCTGGGCCGACCTGCTGGCGGCCGAGCCGGCCGGCCCCT TGATCGTGATCGGCGCCTACACGCTGGCGACGTTCACGATGTTTCCGCGGCCGTTGATCACGCTCGCCGCGGTGCTGGCC TATGGCCCCTTGCAGGGCTTCGCCTATGCGATGGCCGGGATGCTGACCGCGGCGATGGTGACGTATTACGGCGGGCGCGC ACTGAGCCGCGACACGGTACGGCGCGTCGCCGGCGCGCGGCTCAACCGCCTGTCGCGCGAACTGCGGCGGCGCGGCCTGC TTTCGGTCGTCGCGGTGCGGCTCGTGCCGATCGCCCCGTTCATCGTCGTCAACATGGTGGCGGGCGCGGCGCGCATCCGC GTCGACCATTACTTCATCGGCACCGCACTCGGCATACTGCCGGGTGCGCTCGTCGCGACGATCTTCGGCGGGCAGCTGCA CAGTGCGCTGCGCGATCCGTCGAGCATCAACTACGCGCTGGTCGGCATCGTCGTCGCGGCCGCGCTCGTGGCCTTCTTCG TCCTGCGCAAGTGGTTGCGCAGGCAACTCGCCGCCGACGGGAAAGCGGACGCCGATGTGGGTTAG
Upstream 100 bases:
>100_bases GACGCCCGCGGCCGCGCGCGTCCGGGAACCTTGGCGCAGAAAGACGTTCTCGCTAGCTATAGTGAATCGACAAAGTTCAT AAGGAGGGGAGGATGCGTGC
Downstream 100 bases:
>100_bases CCGCAAGGGTCACAGCTTCTCGGTGGCTTCCTACAACATTCACCAGTGCGTCGGCGTCGACCGCCGCCGTGATGCCGCAC GCATCGCAACGGTGATCCGC
Product: phospholipase D/transphosphatidylase
Products: NA
Alternate protein names: ORF-213 [H]
Number of amino acids: Translated: 714; Mature: 713
Protein sequence:
>714_residues MARTRAMGRLVEGKNCWRYEHANRVAFLVDGAAYFDAFGRAALRAQRSILIVGWDFNSRTRLWHDDAPRGVPPVLGDFLD FLVKRNHALQVHILDWDFPMIYAVDREAPPLFGLGWQPRHHIHFHFDSHFPVGGSHHQKIVVIDDAVAFVGGIDLAADRW DTPEHRADDPRRMRGDAAYGPVHDVMIAVDGDAAAALGDLARTRWLRGTGERLHAHPGEGDPWPAELAPELVDVHVGIAR TEPEYDGLPEVREVEALYLDMLDAAKKLIYIENQYFTSLRVGAWLEERLRCEDCPEIVIVLRRSSDGWLEGPTMGTLRSQ LLERLRRADHHGRLHVYYPDVPGLGERSINVHAKLCIVDDEIVRVGSANLNNRSMGFDTECDLAIEAEGNANVRAAIAAF RDRLLAEHLDVSPREVAAAFEREATAAKAVDALAHGERRLLPLSSDVWSSSLAPLAELADLERPVAPEELISQFSPDAPV DEKRGRPLLGVLVVLVVFGGLFALWRWTPLSEYVTPTAVAGWADLLAAEPAGPLIVIGAYTLATFTMFPRPLITLAAVLA YGPLQGFAYAMAGMLTAAMVTYYGGRALSRDTVRRVAGARLNRLSRELRRRGLLSVVAVRLVPIAPFIVVNMVAGAARIR VDHYFIGTALGILPGALVATIFGGQLHSALRDPSSINYALVGIVVAAALVAFFVLRKWLRRQLAADGKADADVG
Sequences:
>Translated_714_residues MARTRAMGRLVEGKNCWRYEHANRVAFLVDGAAYFDAFGRAALRAQRSILIVGWDFNSRTRLWHDDAPRGVPPVLGDFLD FLVKRNHALQVHILDWDFPMIYAVDREAPPLFGLGWQPRHHIHFHFDSHFPVGGSHHQKIVVIDDAVAFVGGIDLAADRW DTPEHRADDPRRMRGDAAYGPVHDVMIAVDGDAAAALGDLARTRWLRGTGERLHAHPGEGDPWPAELAPELVDVHVGIAR TEPEYDGLPEVREVEALYLDMLDAAKKLIYIENQYFTSLRVGAWLEERLRCEDCPEIVIVLRRSSDGWLEGPTMGTLRSQ LLERLRRADHHGRLHVYYPDVPGLGERSINVHAKLCIVDDEIVRVGSANLNNRSMGFDTECDLAIEAEGNANVRAAIAAF RDRLLAEHLDVSPREVAAAFEREATAAKAVDALAHGERRLLPLSSDVWSSSLAPLAELADLERPVAPEELISQFSPDAPV DEKRGRPLLGVLVVLVVFGGLFALWRWTPLSEYVTPTAVAGWADLLAAEPAGPLIVIGAYTLATFTMFPRPLITLAAVLA YGPLQGFAYAMAGMLTAAMVTYYGGRALSRDTVRRVAGARLNRLSRELRRRGLLSVVAVRLVPIAPFIVVNMVAGAARIR VDHYFIGTALGILPGALVATIFGGQLHSALRDPSSINYALVGIVVAAALVAFFVLRKWLRRQLAADGKADADVG >Mature_713_residues ARTRAMGRLVEGKNCWRYEHANRVAFLVDGAAYFDAFGRAALRAQRSILIVGWDFNSRTRLWHDDAPRGVPPVLGDFLDF LVKRNHALQVHILDWDFPMIYAVDREAPPLFGLGWQPRHHIHFHFDSHFPVGGSHHQKIVVIDDAVAFVGGIDLAADRWD TPEHRADDPRRMRGDAAYGPVHDVMIAVDGDAAAALGDLARTRWLRGTGERLHAHPGEGDPWPAELAPELVDVHVGIART EPEYDGLPEVREVEALYLDMLDAAKKLIYIENQYFTSLRVGAWLEERLRCEDCPEIVIVLRRSSDGWLEGPTMGTLRSQL LERLRRADHHGRLHVYYPDVPGLGERSINVHAKLCIVDDEIVRVGSANLNNRSMGFDTECDLAIEAEGNANVRAAIAAFR DRLLAEHLDVSPREVAAAFEREATAAKAVDALAHGERRLLPLSSDVWSSSLAPLAELADLERPVAPEELISQFSPDAPVD EKRGRPLLGVLVVLVVFGGLFALWRWTPLSEYVTPTAVAGWADLLAAEPAGPLIVIGAYTLATFTMFPRPLITLAAVLAY GPLQGFAYAMAGMLTAAMVTYYGGRALSRDTVRRVAGARLNRLSRELRRRGLLSVVAVRLVPIAPFIVVNMVAGAARIRV DHYFIGTALGILPGALVATIFGGQLHSALRDPSSINYALVGIVVAAALVAFFVLRKWLRRQLAADGKADADVG
Specific function: Unknown
COG id: COG1502
COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TVP38/TMEM64 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015414 [H]
Pfam domain/function: PF09335 SNARE_assoc [H]
EC number: NA
Molecular weight: Translated: 78557; Mature: 78426
Theoretical pI: Translated: 6.58; Mature: 6.58
Prosite motif: PS50035 PLD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARTRAMGRLVEGKNCWRYEHANRVAFLVDGAAYFDAFGRAALRAQRSILIVGWDFNSRT CCCHHHHHHHHCCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCC RLWHDDAPRGVPPVLGDFLDFLVKRNHALQVHILDWDFPMIYAVDREAPPLFGLGWQPRH CEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCC HIHFHFDSHFPVGGSHHQKIVVIDDAVAFVGGIDLAADRWDTPEHRADDPRRMRGDAAYG EEEEEECCCCCCCCCCCCEEEEEECHHHHHCCCHHCCCCCCCCCCCCCCHHHHCCCCCCC PVHDVMIAVDGDAAAALGDLARTRWLRGTGERLHAHPGEGDPWPAELAPELVDVHVGIAR CCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCHHHHHEEEEEEE TEPEYDGLPEVREVEALYLDMLDAAKKLIYIENQYFTSLRVGAWLEERLRCEDCPEIVIV CCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEE LRRSSDGWLEGPTMGTLRSQLLERLRRADHHGRLHVYYPDVPGLGERSINVHAKLCIVDD EEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEECH EIVRVGSANLNNRSMGFDTECDLAIEAEGNANVRAAIAAFRDRLLAEHLDVSPREVAAAF HHHEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH EREATAAKAVDALAHGERRLLPLSSDVWSSSLAPLAELADLERPVAPEELISQFSPDAPV HHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCC DEKRGRPLLGVLVVLVVFGGLFALWRWTPLSEYVTPTAVAGWADLLAAEPAGPLIVIGAY CHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHCCCCCCEEEEEHH TLATFTMFPRPLITLAAVLAYGPLQGFAYAMAGMLTAAMVTYYGGRALSRDTVRRVAGAR HHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH LNRLSRELRRRGLLSVVAVRLVPIAPFIVVNMVAGAARIRVDHYFIGTALGILPGALVAT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEHHHHHHHHHHHHHHHHHHH IFGGQLHSALRDPSSINYALVGIVVAAALVAFFVLRKWLRRQLAADGKADADVG HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure ARTRAMGRLVEGKNCWRYEHANRVAFLVDGAAYFDAFGRAALRAQRSILIVGWDFNSRT CCHHHHHHHHCCCCCEEECCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCC RLWHDDAPRGVPPVLGDFLDFLVKRNHALQVHILDWDFPMIYAVDREAPPLFGLGWQPRH CEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCC HIHFHFDSHFPVGGSHHQKIVVIDDAVAFVGGIDLAADRWDTPEHRADDPRRMRGDAAYG EEEEEECCCCCCCCCCCCEEEEEECHHHHHCCCHHCCCCCCCCCCCCCCHHHHCCCCCCC PVHDVMIAVDGDAAAALGDLARTRWLRGTGERLHAHPGEGDPWPAELAPELVDVHVGIAR CCEEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHCHHHHHEEEEEEE TEPEYDGLPEVREVEALYLDMLDAAKKLIYIENQYFTSLRVGAWLEERLRCEDCPEIVIV CCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEEE LRRSSDGWLEGPTMGTLRSQLLERLRRADHHGRLHVYYPDVPGLGERSINVHAKLCIVDD EEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCEEEEEEEEEECH EIVRVGSANLNNRSMGFDTECDLAIEAEGNANVRAAIAAFRDRLLAEHLDVSPREVAAAF HHHEECCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHH EREATAAKAVDALAHGERRLLPLSSDVWSSSLAPLAELADLERPVAPEELISQFSPDAPV HHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCC DEKRGRPLLGVLVVLVVFGGLFALWRWTPLSEYVTPTAVAGWADLLAAEPAGPLIVIGAY CHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHCCCCCCEEEEEHH TLATFTMFPRPLITLAAVLAYGPLQGFAYAMAGMLTAAMVTYYGGRALSRDTVRRVAGAR HHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH LNRLSRELRRRGLLSVVAVRLVPIAPFIVVNMVAGAARIRVDHYFIGTALGILPGALVAT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHEEEEHHHHHHHHHHHHHHHHHHH IFGGQLHSALRDPSSINYALVGIVVAAALVAFFVLRKWLRRQLAADGKADADVG HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 3027671; 8969504; 9387221; 9384377 [H]