| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317476
Identifier: 74317476
GI number: 74317476
Start: 1543713
End: 1545242
Strand: Direct
Name: 74317476
Synonym: Tbd_1458
Alternate gene names: NA
Gene position: 1543713-1545242 (Clockwise)
Preceding gene: 74317475
Following gene: 74317477
Centisome position: 53.05
GC content: 70.52
Gene sequence:
>1530_bases ATGACCGCCGCACTCGATACGCCGGCGCCGGGCACGGCGCTGATTCGCGCCCTCCACGATCCGGCCTGCTACGACCATCC CATCGCGCCGGTCCGCGTGATCGAAACCCACATCTCGTGGGTTTTGCTCACCGGCGACTACGCCTACAAAATCAAGAAAC CGCTCGACCTCGGTTTCCTCGACTTCAGCACGGTCTCGGCGCGCCTGCATGCGTGCTGTGACGAAGTGCGCCTCAATCGC CGGCTCACGCCGGACATCTACCTCGACGTCGTCGCGATCAGCGGCACGCCCGCCGATCCGCGCATCAACGGCAGCGGCGA AGCCTTCGAGTTCGCGGTGAAGATGCGGCAGTTCGACGCCGACGCGACGCTCGACCGGCTCGACGCCGCGGGCCGGCTGA CCGCCGGGCACGTCGACGCGATCGCGACGACGCTTGCGCGCTTTCATCTCGAAGACGCTGCGCGCGCCGGTGCCGACAGC GCATGGGGCGAGCCTGAGGGGGTCTGGGCGCCGATGGCGCAGAACTTTGCCCAGCTCGCGCCGCGGCTCACCGACGCGGA CGAACGGGCGCTGCTCGACCGGCTGCAGGATTGGAGCGAAGCCGAGCATCGGCGTCTCGTGCCACTGCTCGCCGCGCGCA AACGCGAGGGCTTCGTGCGCGAATGCCACGGCGACCTCCATCTCGGCAACCTCGCCTGGGTCGACGACGGCCTGCTGGCC TTCGATTGTCTCGAGTTCGACGCGGAACTGCGCTGGATCGACATCCAGTCCGAGATCGCGTTCTGCTACATGGACCTGCT GCAGCGCGGCCATGCCGAATGGGGGTGGCGCTTCGTCAACCGCTGGCTCGAGGAGACCGGCGACTACGCCGGCCTCGCGC TGCTGCGCTTCTATGCGGTCTATCGCGCACTCGTGCGTGCCAAGGTCGCCGCCGTCGACGGCGCGCAACACGACGACGCG GCAGCACACCCCCGGCGGCAGGTGCGAACCCTGCTCGATCTGGCGCAGACGCTCGTCGAATCGCCTGCGCCGCGACTCGA CATCACCCACGGCCCCTCGGGCGCCGGCAAGACGACCGTCACCGACCGCCTGATGCAGGCACCGGGCGCGATCCGTCTGC GCTCCGACGTCGAGCGCAAGCGGCTTGCCGGCCTGCCGGCGCTCGCCCGCAGCGGGGCCGGCGTCGGCGAGGCGCTTTAC GCCGAAGACGCGACGCGCGCGACCTATGCGCGGCTCGCCACGCTCGCCGCCGACCTGCTCGATGGCGGCTGGCCCGTGGT CGTCGACGCTACCTTCGGCGCGCGCTGGCAGCGCGACCTTTTGCGCACCGTGGCCGAGTCTCGCGGCGTCGCGTTCCGCA TCCTCGACTTCAAGCTCCCGCCTGCCGTCCTGCGCGAGCGCGTCGAAGCGCGTGCACGCGCGCTCACCGACGCATCCGAA GCCGACCTCGGCGTGCTGGCCCGCCAACTCGAAAGCGCCGAACCGCTCGCCGCCGACGAGCAGGCGCTGGCCGTGGACGC GGCGTCCTGA
Upstream 100 bases:
>100_bases GAGGACGTCTACGTCGCCGTCCGCGACGCCTTCGACGCGGCCAAGCGGCGCCTCGAGGACTACGCGCGCCAGCTGTGAGC GCGCGCTGCGGCAGGGCGCG
Downstream 100 bases:
>100_bases GCCGCCGCGGACCGGGCACCCGCTTCTCCACGATTCGAAAATCGCCGGCGCCGGGGCCGGCCTCACATTGGCGATTCGCG CGGACCGTCTACCATTCGAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 509; Mature: 508
Protein sequence:
>509_residues MTAALDTPAPGTALIRALHDPACYDHPIAPVRVIETHISWVLLTGDYAYKIKKPLDLGFLDFSTVSARLHACCDEVRLNR RLTPDIYLDVVAISGTPADPRINGSGEAFEFAVKMRQFDADATLDRLDAAGRLTAGHVDAIATTLARFHLEDAARAGADS AWGEPEGVWAPMAQNFAQLAPRLTDADERALLDRLQDWSEAEHRRLVPLLAARKREGFVRECHGDLHLGNLAWVDDGLLA FDCLEFDAELRWIDIQSEIAFCYMDLLQRGHAEWGWRFVNRWLEETGDYAGLALLRFYAVYRALVRAKVAAVDGAQHDDA AAHPRRQVRTLLDLAQTLVESPAPRLDITHGPSGAGKTTVTDRLMQAPGAIRLRSDVERKRLAGLPALARSGAGVGEALY AEDATRATYARLATLAADLLDGGWPVVVDATFGARWQRDLLRTVAESRGVAFRILDFKLPPAVLRERVEARARALTDASE ADLGVLARQLESAEPLAADEQALAVDAAS
Sequences:
>Translated_509_residues MTAALDTPAPGTALIRALHDPACYDHPIAPVRVIETHISWVLLTGDYAYKIKKPLDLGFLDFSTVSARLHACCDEVRLNR RLTPDIYLDVVAISGTPADPRINGSGEAFEFAVKMRQFDADATLDRLDAAGRLTAGHVDAIATTLARFHLEDAARAGADS AWGEPEGVWAPMAQNFAQLAPRLTDADERALLDRLQDWSEAEHRRLVPLLAARKREGFVRECHGDLHLGNLAWVDDGLLA FDCLEFDAELRWIDIQSEIAFCYMDLLQRGHAEWGWRFVNRWLEETGDYAGLALLRFYAVYRALVRAKVAAVDGAQHDDA AAHPRRQVRTLLDLAQTLVESPAPRLDITHGPSGAGKTTVTDRLMQAPGAIRLRSDVERKRLAGLPALARSGAGVGEALY AEDATRATYARLATLAADLLDGGWPVVVDATFGARWQRDLLRTVAESRGVAFRILDFKLPPAVLRERVEARARALTDASE ADLGVLARQLESAEPLAADEQALAVDAAS >Mature_508_residues TAALDTPAPGTALIRALHDPACYDHPIAPVRVIETHISWVLLTGDYAYKIKKPLDLGFLDFSTVSARLHACCDEVRLNRR LTPDIYLDVVAISGTPADPRINGSGEAFEFAVKMRQFDADATLDRLDAAGRLTAGHVDAIATTLARFHLEDAARAGADSA WGEPEGVWAPMAQNFAQLAPRLTDADERALLDRLQDWSEAEHRRLVPLLAARKREGFVRECHGDLHLGNLAWVDDGLLAF DCLEFDAELRWIDIQSEIAFCYMDLLQRGHAEWGWRFVNRWLEETGDYAGLALLRFYAVYRALVRAKVAAVDGAQHDDAA AHPRRQVRTLLDLAQTLVESPAPRLDITHGPSGAGKTTVTDRLMQAPGAIRLRSDVERKRLAGLPALARSGAGVGEALYA EDATRATYARLATLAADLLDGGWPVVVDATFGARWQRDLLRTVAESRGVAFRILDFKLPPAVLRERVEARARALTDASEA DLGVLARQLESAEPLAADEQALAVDAAS
Specific function: Some isolated peptides of this protein are able to bind to human U937 monocytoblastic and A549 epithelial cell lines [H]
COG id: COG2187
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR010488 [H]
Pfam domain/function: PF06414 Zeta_toxin [H]
EC number: NA
Molecular weight: Translated: 55740; Mature: 55608
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAALDTPAPGTALIRALHDPACYDHPIAPVRVIETHISWVLLTGDYAYKIKKPLDLGFL CCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHEECCCEEEEECCEEEEECCCCCCCCC DFSTVSARLHACCDEVRLNRRLTPDIYLDVVAISGTPADPRINGSGEAFEFAVKMRQFDA CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCC DATLDRLDAAGRLTAGHVDAIATTLARFHLEDAARAGADSAWGEPEGVWAPMAQNFAQLA CHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC PRLTDADERALLDRLQDWSEAEHRRLVPLLAARKREGFVRECHGDLHLGNLAWVDDGLLA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEECCEEEECCCCHH FDCLEFDAELRWIDIQSEIAFCYMDLLQRGHAEWGWRFVNRWLEETGDYAGLALLRFYAV HHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH YRALVRAKVAAVDGAQHDDAAAHPRRQVRTLLDLAQTLVESPAPRLDITHGPSGAGKTTV HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHH TDRLMQAPGAIRLRSDVERKRLAGLPALARSGAGVGEALYAEDATRATYARLATLAADLL HHHHHHCCCCEEEHHHHHHHHHCCCCHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHH DGGWPVVVDATFGARWQRDLLRTVAESRGVAFRILDFKLPPAVLRERVEARARALTDASE CCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCH ADLGVLARQLESAEPLAADEQALAVDAAS HHHHHHHHHHHCCCCCCCCCCHHEEECCC >Mature Secondary Structure TAALDTPAPGTALIRALHDPACYDHPIAPVRVIETHISWVLLTGDYAYKIKKPLDLGFL CCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHEECCCEEEEECCEEEEECCCCCCCCC DFSTVSARLHACCDEVRLNRRLTPDIYLDVVAISGTPADPRINGSGEAFEFAVKMRQFDA CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCC DATLDRLDAAGRLTAGHVDAIATTLARFHLEDAARAGADSAWGEPEGVWAPMAQNFAQLA CHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHC PRLTDADERALLDRLQDWSEAEHRRLVPLLAARKREGFVRECHGDLHLGNLAWVDDGLLA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCEEECCEEEECCCCHH FDCLEFDAELRWIDIQSEIAFCYMDLLQRGHAEWGWRFVNRWLEETGDYAGLALLRFYAV HHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH YRALVRAKVAAVDGAQHDDAAAHPRRQVRTLLDLAQTLVESPAPRLDITHGPSGAGKTTV HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHH TDRLMQAPGAIRLRSDVERKRLAGLPALARSGAGVGEALYAEDATRATYARLATLAADLL HHHHHHCCCCEEEHHHHHHHHHCCCCHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHH DGGWPVVVDATFGARWQRDLLRTVAESRGVAFRILDFKLPPAVLRERVEARARALTDASE CCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCH ADLGVLARQLESAEPLAADEQALAVDAAS HHHHHHHHHHHCCCCCCCCCCHHEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]