| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is 74317425
Identifier: 74317425
GI number: 74317425
Start: 1491499
End: 1493097
Strand: Direct
Name: 74317425
Synonym: Tbd_1407
Alternate gene names: NA
Gene position: 1491499-1493097 (Clockwise)
Preceding gene: 74317424
Following gene: 74317426
Centisome position: 51.26
GC content: 69.98
Gene sequence:
>1599_bases ATGAGGAATGGCCGCGGATTCCGGCGCCGATGCAAGGAGACTGAAATGACCCACGTTGTCATCCTCGGCGCCGGCATCGC GGGCGTGTCCGCGGCCTACGCGCTGAAATCCCGGCTCGGACCCGACGACTCGGTGACGGTCGTGTCGGACAAGCCCTACT TCCACTTCGTGCCCTCGAACCCCTGGGTCGCGATGGGCTGGCGCGAGCGTGCCGACGTCGCGTTTCCGATCGGCCCCTAT CTCGAATCGCGCGGCATCGTGTTCATTGCGAGCGGGGTGCGCTGCATCCAGCCCGACATCATCCAGATCGACCTCGAGAA CGGCGACGTGCTGTTCTACGACTATCTGCTGATCGCGACCGGCACGGCTCCGCTGGCCGACGAAGTCCCGGGCATGGCCG AGCACACCGAGTCGGTGATCCACATCGAACAGGCCGAGCGCGCGCTCGCCGCGTATCGCGCCTTCCTGGAGCGTCCCGGG CCGGTCGTGATCGGCGCGGCGGCGGGCGCGAGCATGCTCGGTCCGCTCTACGAATACGCCTTCCTGATCGACGCCGACCT CAGGCGGCGCAACATTCGCGAGCGCGTCCCGATCACGCTGGTGACGCCCGAGCCCTGGCCCGGTCATCTCGGTCTGGGCG GCGAAGGAACGAGCCGGGGCGCCGTCACCGCGGCACTGGCCGACACCGGGATCCGCGTGATCTGCAACGCGCTTACGACC CGCATCGACCGCGACACGATCCACGTCGCGGAAGTGACTGCCACGGGCAGCGTCAAGCGGACCCATGCCCTGCCCTCCGC CTATTCGGTTTACTGGCCCGCGTTCGGCGGCGTGCGTGGCGTGCGCAGCGCGAGCGATCTCGTCGACGCGCGCGGCCTGG TCGTCGTCGACGAATATCTTCGCAACCCCGAGTACCCCAACGTCTTCGGTCTCGGCGCCTGTGTCGCGCGCGCGCCGGTC GAGGCCACGCCGGTCGCCGTCGGCGCCCCCGAATCGGTCTACTCGATCCAGAAGGCCGGCGAGATCGCGGTGCAGAACAT CCTCGCCGACCTGGCGGGCGCGCCGCCGGTCAGCCATGTCCCGCAGCGTGCGCGCTGGCTCAGCGACATGGGGACGAATG GCGCCGCGTATCAGTCCGAGCCGCAGGTGCCGCTGCGCGACGTCAACTGGATGCGGCAGGGGCGCTGGGTACACCAGGCG AAGGTCGATTTCGAGAAATATTTCGTCAACACGATCCGCCTGCATCCAGCCGACGAGGTCACCGCGGCCGCCTCGAGCAT CGCCGGCCTCATGACGCGGGCACTTGCCGGCAAGAACGGCGGGCACGACGGCCCGGCCGGAGCGGACCTCGCGGGGAACG GCAAGCCTTGGCAAGTCCGCCTGCCGCAGGGCCCTGGCGTCGAGCTGCGCGCCCTCGCCGAATCGCTCGGCCGCGCACCC GACGCGCTGGCCGGCGAACTGCTCGCGGCTGCCGTGTCCGACGCGAAGTCCTACCTCGACCCTGCCGCGGTCGACGCGAT GGCCCGCGCCCGCCGCCACTTGCTGGTGGAAGACCTGCCCGAGCGCGAGCCCGGTGCGGAACGCCGCGGGGGAACCTGA
Upstream 100 bases:
>100_bases TCCCGTTCACCCGGCTGGTCCATATCTGGAGCGCGCCCTTCGGCTACCTCGGCCGCGCCTACCAGATCGTGCGCAGCAAG CGCGGCCTGGTGCGGGGGTG
Downstream 100 bases:
>100_bases GGCGCTGCAATGCGACTACAACGTTGTCGGGCCGACCGATATTAAGATATTCTTGAAATACATCTTTACGAGTCCATTCC GAATCCACCCACCTGAAGGA
Product: sulfide-quinone reductase
Products: NA
Alternate protein names: FAD-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase; FAD-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; SulfideQuinone Oxidoreductase; Sulfide Quinone Reductase; Pyridine Nucleotide-Disulphide Oxidoreductase; Fad-Dependent Pyridine Nucleotide-Disulfide Oxidoreductase; NAD(FAD)-Dependent Dehydrogenase; Sulfide-Quinone Oxidoreductase; Sulfide Dehydrogenase; Quinone Reductase; FAD Dependent Oxidoreductase; FAD-Dependent Pyridine Nucleotide-Disulphideoxido Reductase; Dehydrogenase; Dehydrogenase/Reductase; Pyridine Nucleotide-Disulfide Oxidoreductase Family Protein
Number of amino acids: Translated: 532; Mature: 532
Protein sequence:
>532_residues MRNGRGFRRRCKETEMTHVVILGAGIAGVSAAYALKSRLGPDDSVTVVSDKPYFHFVPSNPWVAMGWRERADVAFPIGPY LESRGIVFIASGVRCIQPDIIQIDLENGDVLFYDYLLIATGTAPLADEVPGMAEHTESVIHIEQAERALAAYRAFLERPG PVVIGAAAGASMLGPLYEYAFLIDADLRRRNIRERVPITLVTPEPWPGHLGLGGEGTSRGAVTAALADTGIRVICNALTT RIDRDTIHVAEVTATGSVKRTHALPSAYSVYWPAFGGVRGVRSASDLVDARGLVVVDEYLRNPEYPNVFGLGACVARAPV EATPVAVGAPESVYSIQKAGEIAVQNILADLAGAPPVSHVPQRARWLSDMGTNGAAYQSEPQVPLRDVNWMRQGRWVHQA KVDFEKYFVNTIRLHPADEVTAAASSIAGLMTRALAGKNGGHDGPAGADLAGNGKPWQVRLPQGPGVELRALAESLGRAP DALAGELLAAAVSDAKSYLDPAAVDAMARARRHLLVEDLPEREPGAERRGGT
Sequences:
>Translated_532_residues MRNGRGFRRRCKETEMTHVVILGAGIAGVSAAYALKSRLGPDDSVTVVSDKPYFHFVPSNPWVAMGWRERADVAFPIGPY LESRGIVFIASGVRCIQPDIIQIDLENGDVLFYDYLLIATGTAPLADEVPGMAEHTESVIHIEQAERALAAYRAFLERPG PVVIGAAAGASMLGPLYEYAFLIDADLRRRNIRERVPITLVTPEPWPGHLGLGGEGTSRGAVTAALADTGIRVICNALTT RIDRDTIHVAEVTATGSVKRTHALPSAYSVYWPAFGGVRGVRSASDLVDARGLVVVDEYLRNPEYPNVFGLGACVARAPV EATPVAVGAPESVYSIQKAGEIAVQNILADLAGAPPVSHVPQRARWLSDMGTNGAAYQSEPQVPLRDVNWMRQGRWVHQA KVDFEKYFVNTIRLHPADEVTAAASSIAGLMTRALAGKNGGHDGPAGADLAGNGKPWQVRLPQGPGVELRALAESLGRAP DALAGELLAAAVSDAKSYLDPAAVDAMARARRHLLVEDLPEREPGAERRGGT >Mature_532_residues MRNGRGFRRRCKETEMTHVVILGAGIAGVSAAYALKSRLGPDDSVTVVSDKPYFHFVPSNPWVAMGWRERADVAFPIGPY LESRGIVFIASGVRCIQPDIIQIDLENGDVLFYDYLLIATGTAPLADEVPGMAEHTESVIHIEQAERALAAYRAFLERPG PVVIGAAAGASMLGPLYEYAFLIDADLRRRNIRERVPITLVTPEPWPGHLGLGGEGTSRGAVTAALADTGIRVICNALTT RIDRDTIHVAEVTATGSVKRTHALPSAYSVYWPAFGGVRGVRSASDLVDARGLVVVDEYLRNPEYPNVFGLGACVARAPV EATPVAVGAPESVYSIQKAGEIAVQNILADLAGAPPVSHVPQRARWLSDMGTNGAAYQSEPQVPLRDVNWMRQGRWVHQA KVDFEKYFVNTIRLHPADEVTAAASSIAGLMTRALAGKNGGHDGPAGADLAGNGKPWQVRLPQGPGVELRALAESLGRAP DALAGELLAAAVSDAKSYLDPAAVDAMARARRHLLVEDLPEREPGAERRGGT
Specific function: Unknown
COG id: COG0446
COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56868; Mature: 56868
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRNGRGFRRRCKETEMTHVVILGAGIAGVSAAYALKSRLGPDDSVTVVSDKPYFHFVPSN CCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCC PWVAMGWRERADVAFPIGPYLESRGIVFIASGVRCIQPDIIQIDLENGDVLFYDYLLIAT CEEEECCCCCCCEEECCCCHHCCCCEEEEECCCEECCCCEEEEECCCCCEEEEEEEEEEC GTAPLADEVPGMAEHTESVIHIEQAERALAAYRAFLERPGPVVIGAAAGASMLGPLYEYA CCCCCHHHCCCHHHHHHHHEEHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH FLIDADLRRRNIRERVPITLVTPEPWPGHLGLGGEGTSRGAVTAALADTGIRVICNALTT HHCCCHHHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHHHHHHHH RIDRDTIHVAEVTATGSVKRTHALPSAYSVYWPAFGGVRGVRSASDLVDARGLVVVDEYL HCCCCEEEEEEEEECCCCHHHHCCCCCCEEECCCCCCHHHCCCHHHHHHCCCEEEEHHHH RNPEYPNVFGLGACVARAPVEATPVAVGAPESVYSIQKAGEIAVQNILADLAGAPPVSHV CCCCCCCEEEHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH PQRARWLSDMGTNGAAYQSEPQVPLRDVNWMRQGRWVHQAKVDFEKYFVNTIRLHPADEV HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHEEHEEECCCHHH TAAASSIAGLMTRALAGKNGGHDGPAGADLAGNGKPWQVRLPQGPGVELRALAESLGRAP HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCC DALAGELLAAAVSDAKSYLDPAAVDAMARARRHLLVEDLPEREPGAERRGGT HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC >Mature Secondary Structure MRNGRGFRRRCKETEMTHVVILGAGIAGVSAAYALKSRLGPDDSVTVVSDKPYFHFVPSN CCCCCHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCC PWVAMGWRERADVAFPIGPYLESRGIVFIASGVRCIQPDIIQIDLENGDVLFYDYLLIAT CEEEECCCCCCCEEECCCCHHCCCCEEEEECCCEECCCCEEEEECCCCCEEEEEEEEEEC GTAPLADEVPGMAEHTESVIHIEQAERALAAYRAFLERPGPVVIGAAAGASMLGPLYEYA CCCCCHHHCCCHHHHHHHHEEHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH FLIDADLRRRNIRERVPITLVTPEPWPGHLGLGGEGTSRGAVTAALADTGIRVICNALTT HHCCCHHHHCCHHHHCCEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHCCHHHHHHHHHH RIDRDTIHVAEVTATGSVKRTHALPSAYSVYWPAFGGVRGVRSASDLVDARGLVVVDEYL HCCCCEEEEEEEEECCCCHHHHCCCCCCEEECCCCCCHHHCCCHHHHHHCCCEEEEHHHH RNPEYPNVFGLGACVARAPVEATPVAVGAPESVYSIQKAGEIAVQNILADLAGAPPVSHV CCCCCCCEEEHHHHHHCCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH PQRARWLSDMGTNGAAYQSEPQVPLRDVNWMRQGRWVHQAKVDFEKYFVNTIRLHPADEV HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHEEHEEECCCHHH TAAASSIAGLMTRALAGKNGGHDGPAGADLAGNGKPWQVRLPQGPGVELRALAESLGRAP HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCC DALAGELLAAAVSDAKSYLDPAAVDAMARARRHLLVEDLPEREPGAERRGGT HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA