| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is hflX [H]
Identifier: 74317381
GI number: 74317381
Start: 1442923
End: 1444299
Strand: Direct
Name: hflX [H]
Synonym: Tbd_1363
Alternate gene names: 74317381
Gene position: 1442923-1444299 (Clockwise)
Preceding gene: 74317359
Following gene: 74317383
Centisome position: 49.59
GC content: 66.3
Gene sequence:
>1377_bases ATGCCCCTTCAAGTAGAAGACAAACCCGCGTACGCGGTCGTCGCCGCCGTTCAGTTGCCTCAGGTCAGCGACCTCGAGTT CGAGGCGTCGTTGACCGAATTACGGGAGCTGGCCAAGACCCTGGGGTTCACAGTCATCCGCACGTTCACGCAAAAGCGCC CGGGCTTCGACACGACGGCCTATCTGGGCGTCGGCAAGCGGCAGGAACTCACGCGCTTCGTCCGCGGCGGGGAAGAAGAA GCGGAAGCCGATCCCGCGGCGCCGTATGCCTTGCATCGCGTCGAGGGCCAGGACGATGTCTCGCCGCATCCGATCGACGT GCTTTTCGTCGACCACGAGATTTCGCCCTCGCAGGCCCGCAACCTGGAAAACGAGGTGGGTTGTCAGGTGATGGACCGCA CCATGGTCATCCTCGAGATCTTCCACCGCAACGCGCGCTCCCCGGCGGCACGCGCGCAGGTCGAGATCGCACGTCTGGGC TACCTCGCGCCGCGCCTGCGCGAGGCAGCGAAACTCGCCGGGCCGCAGGGCCGGCAGCGCAGCGGGGTCGGCGGACGCGG CGCCGGCGAATCGCACACCGAACTCGACAAGCGCAAGATCCGCGACCGCATCGCCGAACTGCAGAAGGAAATCGCCGCGA TGGATGCGGACCGCAAGACCCAACGCGCCCGGCGGCAGGCGCACCAGGGCCTCGCCAGCGTGGCGCTGGTCGGCTATACC AACGCCGGCAAGTCCACGCTGATGCGCGCCCTCACCGGCAGCGAAGTGCTGGTCGCCAACAAGCTCTTCGCCACCCTCGA CACCACGGTCCGCACATTGCACCCCGAGGGCGTCCCGCGCGTCCTTGTCAGCGACACCGTCGGCTTCATCAAGAACCTGC CGCACGGCCTGGTCGCGTCGTTCAAGTCCACGCTCGAAGAGGCACTCGATGCCTCGCTGCTGCTCCATGTCATCGACGCC AGCGACCCTGGCTTCGTGCGGCAGATCGAAACCACCGAAGACGTGCTCGAGGAAATCGACGCGCAGGACGTGCCGCGCTT GCGCATCTTCAACAAGATCGACCACCTCGGCGACGCCGTGGCGCAAGCCGAGCGCGAAGCCGCGCTGCGCGCAGCCTATC CCGGCTGCATCGTCATGAGCGCCCGCCGCCCGGAAGACGTCGCGAAACTGCACGACGCGATCCTCACGTTTTTCCAGAAG GATCTGGTCGAGGCCGAGCTGTTTCTGCCGTGGTCGGCACAGCAGCTGCGCGGCGAAATATTCGCGCGCTGCCAAGTGCT GGAAGAACGCTCGGACGAAGACGGTGCGTTTTTCCACGTGCGCGGCGAGCAGGAGACCTTGAATGGCCTGCGCGACCAAC TCGGCCACGCGCGATGA
Upstream 100 bases:
>100_bases TCCAGCCGACCTAATAGGCTCCCCCGTACCCGTGCGTGCTGCGCGCTCCGGTCTGCGTTCCCGCGTACTATCTGCCCTCG CCCCATTCCCTAGACTCACC
Downstream 100 bases:
>100_bases AATCGGCGTGCTCACGGCGACTCCCCGCGGCCCGGTGAACGGCCGTCGCAGCCGTGCCGTGCGCGTCCTCGGCTCAGCTT GTGGCGGCAGGTGCCCCGAC
Product: putative GTP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 458; Mature: 457
Protein sequence:
>458_residues MPLQVEDKPAYAVVAAVQLPQVSDLEFEASLTELRELAKTLGFTVIRTFTQKRPGFDTTAYLGVGKRQELTRFVRGGEEE AEADPAAPYALHRVEGQDDVSPHPIDVLFVDHEISPSQARNLENEVGCQVMDRTMVILEIFHRNARSPAARAQVEIARLG YLAPRLREAAKLAGPQGRQRSGVGGRGAGESHTELDKRKIRDRIAELQKEIAAMDADRKTQRARRQAHQGLASVALVGYT NAGKSTLMRALTGSEVLVANKLFATLDTTVRTLHPEGVPRVLVSDTVGFIKNLPHGLVASFKSTLEEALDASLLLHVIDA SDPGFVRQIETTEDVLEEIDAQDVPRLRIFNKIDHLGDAVAQAEREAALRAAYPGCIVMSARRPEDVAKLHDAILTFFQK DLVEAELFLPWSAQQLRGEIFARCQVLEERSDEDGAFFHVRGEQETLNGLRDQLGHAR
Sequences:
>Translated_458_residues MPLQVEDKPAYAVVAAVQLPQVSDLEFEASLTELRELAKTLGFTVIRTFTQKRPGFDTTAYLGVGKRQELTRFVRGGEEE AEADPAAPYALHRVEGQDDVSPHPIDVLFVDHEISPSQARNLENEVGCQVMDRTMVILEIFHRNARSPAARAQVEIARLG YLAPRLREAAKLAGPQGRQRSGVGGRGAGESHTELDKRKIRDRIAELQKEIAAMDADRKTQRARRQAHQGLASVALVGYT NAGKSTLMRALTGSEVLVANKLFATLDTTVRTLHPEGVPRVLVSDTVGFIKNLPHGLVASFKSTLEEALDASLLLHVIDA SDPGFVRQIETTEDVLEEIDAQDVPRLRIFNKIDHLGDAVAQAEREAALRAAYPGCIVMSARRPEDVAKLHDAILTFFQK DLVEAELFLPWSAQQLRGEIFARCQVLEERSDEDGAFFHVRGEQETLNGLRDQLGHAR >Mature_457_residues PLQVEDKPAYAVVAAVQLPQVSDLEFEASLTELRELAKTLGFTVIRTFTQKRPGFDTTAYLGVGKRQELTRFVRGGEEEA EADPAAPYALHRVEGQDDVSPHPIDVLFVDHEISPSQARNLENEVGCQVMDRTMVILEIFHRNARSPAARAQVEIARLGY LAPRLREAAKLAGPQGRQRSGVGGRGAGESHTELDKRKIRDRIAELQKEIAAMDADRKTQRARRQAHQGLASVALVGYTN AGKSTLMRALTGSEVLVANKLFATLDTTVRTLHPEGVPRVLVSDTVGFIKNLPHGLVASFKSTLEEALDASLLLHVIDAS DPGFVRQIETTEDVLEEIDAQDVPRLRIFNKIDHLGDAVAQAEREAALRAAYPGCIVMSARRPEDVAKLHDAILTFFQKD LVEAELFLPWSAQQLRGEIFARCQVLEERSDEDGAFFHVRGEQETLNGLRDQLGHAR
Specific function: Unknown
COG id: COG2262
COG function: function code R; GTPases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]
Homologues:
Organism=Homo sapiens, GI310133118, Length=151, Percent_Identity=41.7218543046358, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI310133116, Length=151, Percent_Identity=41.7218543046358, Blast_Score=102, Evalue=5e-22, Organism=Homo sapiens, GI310124269, Length=144, Percent_Identity=40.9722222222222, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI310124267, Length=144, Percent_Identity=40.9722222222222, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI310124171, Length=144, Percent_Identity=40.9722222222222, Blast_Score=100, Evalue=4e-21, Organism=Homo sapiens, GI310124169, Length=144, Percent_Identity=40.9722222222222, Blast_Score=100, Evalue=4e-21, Organism=Escherichia coli, GI1790615, Length=431, Percent_Identity=36.1948955916473, Blast_Score=226, Evalue=2e-60, Organism=Caenorhabditis elegans, GI17561038, Length=249, Percent_Identity=34.5381526104418, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI24650079, Length=265, Percent_Identity=33.5849056603774, Blast_Score=109, Evalue=4e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR016496 - InterPro: IPR006073 - InterPro: IPR002917 [H]
Pfam domain/function: PF01926 MMR_HSR1 [H]
EC number: NA
Molecular weight: Translated: 50608; Mature: 50477
Theoretical pI: Translated: 5.80; Mature: 5.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLQVEDKPAYAVVAAVQLPQVSDLEFEASLTELRELAKTLGFTVIRTFTQKRPGFDTTA CCCCCCCCCCEEEEEEHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE YLGVGKRQELTRFVRGGEEEAEADPAAPYALHRVEGQDDVSPHPIDVLFVDHEISPSQAR EECCCCHHHHHHHHHCCCHHHCCCCCCCHHHEECCCCCCCCCCCEEEEEEECCCCHHHHH NLENEVGCQVMDRTMVILEIFHRNARSPAARAQVEIARLGYLAPRLREAAKLAGPQGRQR CCHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC SGVGGRGAGESHTELDKRKIRDRIAELQKEIAAMDADRKTQRARRQAHQGLASVALVGYT CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEC NAGKSTLMRALTGSEVLVANKLFATLDTTVRTLHPEGVPRVLVSDTVGFIKNLPHGLVAS CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHH FKSTLEEALDASLLLHVIDASDPGFVRQIETTEDVLEEIDAQDVPRLRIFNKIDHLGDAV HHHHHHHHHHHHHHHHHHCCCCCCHHEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH AQAEREAALRAAYPGCIVMSARRPEDVAKLHDAILTFFQKDLVEAELFLPWSAQQLRGEI HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH FARCQVLEERSDEDGAFFHVRGEQETLNGLRDQLGHAR HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCC >Mature Secondary Structure PLQVEDKPAYAVVAAVQLPQVSDLEFEASLTELRELAKTLGFTVIRTFTQKRPGFDTTA CCCCCCCCCEEEEEEHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE YLGVGKRQELTRFVRGGEEEAEADPAAPYALHRVEGQDDVSPHPIDVLFVDHEISPSQAR EECCCCHHHHHHHHHCCCHHHCCCCCCCHHHEECCCCCCCCCCCEEEEEEECCCCHHHHH NLENEVGCQVMDRTMVILEIFHRNARSPAARAQVEIARLGYLAPRLREAAKLAGPQGRQR CCHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC SGVGGRGAGESHTELDKRKIRDRIAELQKEIAAMDADRKTQRARRQAHQGLASVALVGYT CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEEEEC NAGKSTLMRALTGSEVLVANKLFATLDTTVRTLHPEGVPRVLVSDTVGFIKNLPHGLVAS CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHH FKSTLEEALDASLLLHVIDASDPGFVRQIETTEDVLEEIDAQDVPRLRIFNKIDHLGDAV HHHHHHHHHHHHHHHHHHCCCCCCHHEEEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH AQAEREAALRAAYPGCIVMSARRPEDVAKLHDAILTFFQKDLVEAELFLPWSAQQLRGEI HHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH FARCQVLEERSDEDGAFFHVRGEQETLNGLRDQLGHAR HHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8248183; 7610040; 9278503; 2020545; 3040675 [H]