| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is merA [H]
Identifier: 74317359
GI number: 74317359
Start: 1422432
End: 1424057
Strand: Direct
Name: merA [H]
Synonym: Tbd_1341
Alternate gene names: 74317359
Gene position: 1422432-1424057 (Clockwise)
Preceding gene: 74317358
Following gene: 74317381
Centisome position: 48.88
GC content: 64.76
Gene sequence:
>1626_bases ATGAGCGAACAGATTCTCCGCGTGACGGGCATGACCTGCGACCACTGTGCAGCGTCCGTGAAACAGGCACTGCTGAGGGT GGCCGGTGTGACCCGTGCGGATGTGTCCTGTCCCGATGCCATGGCCCGCGTGGAGGTGGGTGTGGACACCCCCGTCGCCG CACTGCTCAACGCCGTGCGTGCCAGGGGCTACGGCGCGGAGGTGGGTGGAGACGCCACGTCCAAGGCCTCCACCAAGCTC AACGTCACCATTATCGGCGCCGGGTCGGCGGGCTTTGCCGCCGCCATCCGCGCGGCTGAAGAAGGCGCCGAAGTGACGGT GATCGAAGCCTCCACCATCGGCGGCACCTGCGTAAACGTCGGCTGCGTGCCTTCGAAGATTCTGATCCGTGCCGCCCATG TGGCGCACCTGCAAGCCCGACATCCTTTTCCCGGGCTGGTCAGGCATGCGCCGTTGCTGGATCGCACGGCGTTGGTCGCG CAGCAGCAGGCGCGGGTGGAAGAACTGCGCCATGCGAAGTACGAACGCATTCTGGAAACCAACCCCGGCATCAAGCTGTT GCGCGGCTTTGCGCGTTTCGAGGATGCCAAGACCCTCGTCGTCCGGCAACCGGATGATACGGAAAAGCGCCTCACGCCCG ATCGAATCCTGATCGCCCCCGGCCGCTCGCCGCGGATTCCGGACGTGCCCGGCCTTGCCGGCACGCCGTTCTGGACTTCG TCCGAGGCATTGATCGCCACGGAGACGCCGGCGCACCTGATCGTACACGGCGGTTCGGTGGTCGCGCTGGAACTCGCGCA GGCTTTCCTGCGTCTGGGCAGCCGCGTTACGCTCGTTGCGCGCGGCAAGCTGTTGTCCAGGGAAGATCCGGCGATTGGCG AAGGGCTCAATGCCGTGCTGGAGGAAGAGGGCATGCGGGTTCTCACGGATACCGACGTGAAAGCCGTACGCTTCGACGGT ACGACATTTGAACTTGAAACAAGCGCGGGAACTCTCAGTGGCGACCGGCTGCTCGTTGCCACCGGCCGTAAGCCCAATAC GGCGGGGCTCGCCCTCGACCGCACCGGCGTCACTACGGATACCAGCGGCGCCATCGTCGTGGACGATCATCTCCGCACTT CGGTGCCGCACATCTATGCGGCCGGCGACTGCACCAATGCGCCGCAGTTCGTGTACGTGGCGGCGGCGGCTGGCACCCGC GCGGCAATCAATATGACCGGCGGCGATGCGGCGCTGGATCTCTCCGTGGTGCCTGCAGTGGTGTTCACCGATCCGCAGGT AGCCACGGTTGGCCTCACCGAAGCGCAGGCAAACAAGCTTGGCATGGAAACCGACAGCCGCACGCTCACACTCGACAACG TGCCGCGCGCGCTGGCCAACTTCGACACGCGCGGTTTCATCAAGCTGGTGTCGGAGAAAAAAACCGGACGCCTGCTGGGC GCGCAGGTGCTGGCAGGAGAAGGCGGCGAGATCATCCAGACCGCCGCGCTGGCTATCCAAAACCGCATGACGGTGGCCGA TCTGGCGGGACAATTATTCCCCTACATCACCATGGGGGAAGGGTTGAAGCTTTGCGCCCAGACCTTTACCACGGACGTCA AGCAGCTGTCCTGTTGTGCGGGATAA
Upstream 100 bases:
>100_bases TCGACGATGCCAGCACCAGCATCAAAGCGCTGGAGGATGCCACCTTCGAGGCGGGCTATGAATCCACGGTCAAAGCCCCC GCCAAAGGAGGGCAGGCCAA
Downstream 100 bases:
>100_bases ATCACTCTGGCGCTTACGGTGCGAGCGGGTGTAGTCCTGGATTTGCGACCGGACTTCTTCGATCGTCTGAATCCGGCCGA ATTGCAGCGATCTCTTCACT
Product: putative mercuric reductase
Products: NA
Alternate protein names: Hg(II) reductase [H]
Number of amino acids: Translated: 541; Mature: 540
Protein sequence:
>541_residues MSEQILRVTGMTCDHCAASVKQALLRVAGVTRADVSCPDAMARVEVGVDTPVAALLNAVRARGYGAEVGGDATSKASTKL NVTIIGAGSAGFAAAIRAAEEGAEVTVIEASTIGGTCVNVGCVPSKILIRAAHVAHLQARHPFPGLVRHAPLLDRTALVA QQQARVEELRHAKYERILETNPGIKLLRGFARFEDAKTLVVRQPDDTEKRLTPDRILIAPGRSPRIPDVPGLAGTPFWTS SEALIATETPAHLIVHGGSVVALELAQAFLRLGSRVTLVARGKLLSREDPAIGEGLNAVLEEEGMRVLTDTDVKAVRFDG TTFELETSAGTLSGDRLLVATGRKPNTAGLALDRTGVTTDTSGAIVVDDHLRTSVPHIYAAGDCTNAPQFVYVAAAAGTR AAINMTGGDAALDLSVVPAVVFTDPQVATVGLTEAQANKLGMETDSRTLTLDNVPRALANFDTRGFIKLVSEKKTGRLLG AQVLAGEGGEIIQTAALAIQNRMTVADLAGQLFPYITMGEGLKLCAQTFTTDVKQLSCCAG
Sequences:
>Translated_541_residues MSEQILRVTGMTCDHCAASVKQALLRVAGVTRADVSCPDAMARVEVGVDTPVAALLNAVRARGYGAEVGGDATSKASTKL NVTIIGAGSAGFAAAIRAAEEGAEVTVIEASTIGGTCVNVGCVPSKILIRAAHVAHLQARHPFPGLVRHAPLLDRTALVA QQQARVEELRHAKYERILETNPGIKLLRGFARFEDAKTLVVRQPDDTEKRLTPDRILIAPGRSPRIPDVPGLAGTPFWTS SEALIATETPAHLIVHGGSVVALELAQAFLRLGSRVTLVARGKLLSREDPAIGEGLNAVLEEEGMRVLTDTDVKAVRFDG TTFELETSAGTLSGDRLLVATGRKPNTAGLALDRTGVTTDTSGAIVVDDHLRTSVPHIYAAGDCTNAPQFVYVAAAAGTR AAINMTGGDAALDLSVVPAVVFTDPQVATVGLTEAQANKLGMETDSRTLTLDNVPRALANFDTRGFIKLVSEKKTGRLLG AQVLAGEGGEIIQTAALAIQNRMTVADLAGQLFPYITMGEGLKLCAQTFTTDVKQLSCCAG >Mature_540_residues SEQILRVTGMTCDHCAASVKQALLRVAGVTRADVSCPDAMARVEVGVDTPVAALLNAVRARGYGAEVGGDATSKASTKLN VTIIGAGSAGFAAAIRAAEEGAEVTVIEASTIGGTCVNVGCVPSKILIRAAHVAHLQARHPFPGLVRHAPLLDRTALVAQ QQARVEELRHAKYERILETNPGIKLLRGFARFEDAKTLVVRQPDDTEKRLTPDRILIAPGRSPRIPDVPGLAGTPFWTSS EALIATETPAHLIVHGGSVVALELAQAFLRLGSRVTLVARGKLLSREDPAIGEGLNAVLEEEGMRVLTDTDVKAVRFDGT TFELETSAGTLSGDRLLVATGRKPNTAGLALDRTGVTTDTSGAIVVDDHLRTSVPHIYAAGDCTNAPQFVYVAAAAGTRA AINMTGGDAALDLSVVPAVVFTDPQVATVGLTEAQANKLGMETDSRTLTLDNVPRALANFDTRGFIKLVSEKKTGRLLGA QVLAGEGGEIIQTAALAIQNRMTVADLAGQLFPYITMGEGLKLCAQTFTTDVKQLSCCAG
Specific function: Resistance to Hg(2+) in bacteria appears to be governed by a specialized system which includes mercuric reductase. MerA protein is responsible for volatilizing mercury as Hg(0) [H]
COG id: COG1249
COG function: function code C; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HMA domain [H]
Homologues:
Organism=Homo sapiens, GI91199540, Length=465, Percent_Identity=29.6774193548387, Blast_Score=196, Evalue=4e-50, Organism=Homo sapiens, GI50301238, Length=459, Percent_Identity=32.8976034858388, Blast_Score=172, Evalue=8e-43, Organism=Homo sapiens, GI22035672, Length=432, Percent_Identity=30.5555555555556, Blast_Score=124, Evalue=3e-28, Organism=Homo sapiens, GI33519430, Length=467, Percent_Identity=26.9807280513919, Blast_Score=114, Evalue=2e-25, Organism=Homo sapiens, GI33519428, Length=467, Percent_Identity=26.9807280513919, Blast_Score=114, Evalue=2e-25, Organism=Homo sapiens, GI33519426, Length=467, Percent_Identity=26.9807280513919, Blast_Score=114, Evalue=2e-25, Organism=Homo sapiens, GI148277065, Length=467, Percent_Identity=26.9807280513919, Blast_Score=114, Evalue=2e-25, Organism=Homo sapiens, GI148277071, Length=466, Percent_Identity=27.0386266094421, Blast_Score=114, Evalue=3e-25, Organism=Homo sapiens, GI291045266, Length=431, Percent_Identity=25.0580046403712, Blast_Score=101, Evalue=2e-21, Organism=Homo sapiens, GI291045268, Length=320, Percent_Identity=26.875, Blast_Score=85, Evalue=2e-16, Organism=Escherichia coli, GI1786307, Length=476, Percent_Identity=31.0924369747899, Blast_Score=204, Evalue=8e-54, Organism=Escherichia coli, GI87081717, Length=452, Percent_Identity=30.5309734513274, Blast_Score=201, Evalue=1e-52, Organism=Escherichia coli, GI1789915, Length=349, Percent_Identity=37.8223495702006, Blast_Score=182, Evalue=3e-47, Organism=Escherichia coli, GI87082354, Length=466, Percent_Identity=27.8969957081545, Blast_Score=165, Evalue=6e-42, Organism=Caenorhabditis elegans, GI32565766, Length=466, Percent_Identity=30.4721030042918, Blast_Score=206, Evalue=3e-53, Organism=Caenorhabditis elegans, GI71983419, Length=349, Percent_Identity=32.0916905444126, Blast_Score=137, Evalue=2e-32, Organism=Caenorhabditis elegans, GI71983429, Length=349, Percent_Identity=32.0916905444126, Blast_Score=137, Evalue=2e-32, Organism=Caenorhabditis elegans, GI17557007, Length=460, Percent_Identity=27.8260869565217, Blast_Score=130, Evalue=2e-30, Organism=Caenorhabditis elegans, GI71982272, Length=432, Percent_Identity=23.1481481481481, Blast_Score=90, Evalue=3e-18, Organism=Saccharomyces cerevisiae, GI6321091, Length=469, Percent_Identity=29.4243070362473, Blast_Score=185, Evalue=1e-47, Organism=Saccharomyces cerevisiae, GI6325166, Length=464, Percent_Identity=28.2327586206897, Blast_Score=155, Evalue=2e-38, Organism=Saccharomyces cerevisiae, GI6325240, Length=473, Percent_Identity=26.0042283298097, Blast_Score=130, Evalue=4e-31, Organism=Drosophila melanogaster, GI21358499, Length=484, Percent_Identity=30.3719008264463, Blast_Score=205, Evalue=7e-53, Organism=Drosophila melanogaster, GI17737741, Length=502, Percent_Identity=28.6852589641434, Blast_Score=132, Evalue=8e-31, Organism=Drosophila melanogaster, GI24640551, Length=513, Percent_Identity=27.4853801169591, Blast_Score=125, Evalue=5e-29, Organism=Drosophila melanogaster, GI24640553, Length=508, Percent_Identity=27.1653543307087, Blast_Score=124, Evalue=1e-28, Organism=Drosophila melanogaster, GI24640549, Length=501, Percent_Identity=27.3453093812375, Blast_Score=124, Evalue=2e-28,
Paralogues:
None
Copy number: 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1880 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 6,000 Molecules/Cell In: Glucose minimal
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR017969 - InterPro: IPR006121 - InterPro: IPR000815 - InterPro: IPR021179 - InterPro: IPR004099 - InterPro: IPR012999 - InterPro: IPR001327 [H]
Pfam domain/function: PF00403 HMA; PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]
EC number: =1.16.1.1 [H]
Molecular weight: Translated: 56657; Mature: 56525
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: PS00076 PYRIDINE_REDOX_1 ; PS50846 HMA_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEQILRVTGMTCDHCAASVKQALLRVAGVTRADVSCPDAMARVEVGVDTPVAALLNAVR CCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEECCCCHHHHHHHHHH ARGYGAEVGGDATSKASTKLNVTIIGAGSAGFAAAIRAAEEGAEVTVIEASTIGGTCVNV HCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEECCCCCEEEEE GCVPSKILIRAAHVAHLQARHPFPGLVRHAPLLDRTALVAQQQARVEELRHAKYERILET CCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC NPGIKLLRGFARFEDAKTLVVRQPDDTEKRLTPDRILIAPGRSPRIPDVPGLAGTPFWTS CCCHHHHHHHHHHCCCCEEEEECCCCCHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC SEALIATETPAHLIVHGGSVVALELAQAFLRLGSRVTLVARGKLLSREDPAIGEGLNAVL CCEEEEECCCCEEEEECCCEEHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHH EEEGMRVLTDTDVKAVRFDGTTFELETSAGTLSGDRLLVATGRKPNTAGLALDRTGVTTD HHCCCEEEECCCCEEEEECCEEEEEECCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCC TSGAIVVDDHLRTSVPHIYAAGDCTNAPQFVYVAAAAGTRAAINMTGGDAALDLSVVPAV CCCEEEECCCHHCCCCEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEE VFTDPQVATVGLTEAQANKLGMETDSRTLTLDNVPRALANFDTRGFIKLVSEKKTGRLLG EECCCCEEEEECCHHHHHHCCCCCCCCEEEECCHHHHHHCCCCCCCCEEECCCCCCCEEE AQVLAGEGGEIIQTAALAIQNRMTVADLAGQLFPYITMGEGLKLCAQTFTTDVKQLSCCA EEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHCC G C >Mature Secondary Structure SEQILRVTGMTCDHCAASVKQALLRVAGVTRADVSCPDAMARVEVGVDTPVAALLNAVR CCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHEEEECCCCHHHHHHHHHH ARGYGAEVGGDATSKASTKLNVTIIGAGSAGFAAAIRAAEEGAEVTVIEASTIGGTCVNV HCCCCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEECCCCCEEEEE GCVPSKILIRAAHVAHLQARHPFPGLVRHAPLLDRTALVAQQQARVEELRHAKYERILET CCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC NPGIKLLRGFARFEDAKTLVVRQPDDTEKRLTPDRILIAPGRSPRIPDVPGLAGTPFWTS CCCHHHHHHHHHHCCCCEEEEECCCCCHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC SEALIATETPAHLIVHGGSVVALELAQAFLRLGSRVTLVARGKLLSREDPAIGEGLNAVL CCEEEEECCCCEEEEECCCEEHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHH EEEGMRVLTDTDVKAVRFDGTTFELETSAGTLSGDRLLVATGRKPNTAGLALDRTGVTTD HHCCCEEEECCCCEEEEECCEEEEEECCCCCCCCCEEEEEECCCCCCCCEEEECCCCCCC TSGAIVVDDHLRTSVPHIYAAGDCTNAPQFVYVAAAAGTRAAINMTGGDAALDLSVVPAV CCCEEEECCCHHCCCCEEEECCCCCCCCCEEEEEECCCCEEEEEECCCCCEEEEEEEEEE VFTDPQVATVGLTEAQANKLGMETDSRTLTLDNVPRALANFDTRGFIKLVSEKKTGRLLG EECCCCEEEEECCHHHHHHCCCCCCCCEEEECCHHHHHHCCCCCCCCEEECCCCCCCEEE AQVLAGEGGEIIQTAALAIQNRMTVADLAGQLFPYITMGEGLKLCAQTFTTDVKQLSCCA EEEEECCCCHHHHHHHHHHHCCCHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHCC G C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9167257 [H]