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The map label for this gene is ydhM [C]

Identifier: 74317273

GI number: 74317273

Start: 1317849

End: 1318451

Strand: Reverse

Name: ydhM [C]

Synonym: Tbd_1255

Alternate gene names: 74317273

Gene position: 1318451-1317849 (Counterclockwise)

Preceding gene: 74317277

Following gene: 74317272

Centisome position: 45.31

GC content: 65.01

Gene sequence:

>603_bases
ATGAACATCGCCACCGACACCCGCTCCCGCATCATCGCCGCCGCCAAGCCGCGCTTCCACTCGCGCAGCTACGCCAACGT
CGGCATCCAGGAAATCTGCGAGGGCGCGGGCGTGCAGAAAGGCAGCTTCTATCACTTTTTTCCATCCAAGCGCGATCTCG
TGCTCGCGGTCATCGACGAATTTGCCGACGAATGGGCCCACGGCTTCGTCGCCGAGGCCTTCGACCCCGCGCTGCCGCCG
ATGGAGCGCATCGACTACCTCGTCGACGCGGCCTACTTCTGGCAGAAGTCGATCAAGCAGGTGCACGGGCGCATGCTCGG
CTGCATCTTCGGCAACCTGACGCTCGAAGTCAGCACGCAGGACGACATCCTGCGCGCCAAGCTGCTGGCGATCTTTTCGC
GCGCTAAATCGCGTTTCAAGGAAACGCTCGAGCAAGCGGCAGCGGCCGGCGCGATCGCGCCGCTCGATGCCGACCGGACC
GCCGAAGCCATGCTCGCCTACCTCGAAGGCGTGATCCTGCTCGCCAAGTCGCAGAACGATCCCGAGGTGATCCACCGCCT
CGGCCCCGCGATCAAGACCCTGCGCGTCGAAACGGCGGCCTGA

Upstream 100 bases:

>100_bases
GGCGCGTTCATCGACGCACGGAATTTCCGTAAGCCGTATAGGGACACACGAACAACGATCCCGCTTGCACTTTACCGAAC
GGTCAACTAGGATCCCCCTC

Downstream 100 bases:

>100_bases
TACGCATGCGTAAAGGCCATTTTTTTCACGCGGGAGTTAACCGACCGGTCTAGCGGTCGCTCCGTGGGAGCCGCGCTGCC
AGTTTCAACAGCGGCGCCCT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: ORF3 [H]

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MNIATDTRSRIIAAAKPRFHSRSYANVGIQEICEGAGVQKGSFYHFFPSKRDLVLAVIDEFADEWAHGFVAEAFDPALPP
MERIDYLVDAAYFWQKSIKQVHGRMLGCIFGNLTLEVSTQDDILRAKLLAIFSRAKSRFKETLEQAAAAGAIAPLDADRT
AEAMLAYLEGVILLAKSQNDPEVIHRLGPAIKTLRVETAA

Sequences:

>Translated_200_residues
MNIATDTRSRIIAAAKPRFHSRSYANVGIQEICEGAGVQKGSFYHFFPSKRDLVLAVIDEFADEWAHGFVAEAFDPALPP
MERIDYLVDAAYFWQKSIKQVHGRMLGCIFGNLTLEVSTQDDILRAKLLAIFSRAKSRFKETLEQAAAAGAIAPLDADRT
AEAMLAYLEGVILLAKSQNDPEVIHRLGPAIKTLRVETAA
>Mature_200_residues
MNIATDTRSRIIAAAKPRFHSRSYANVGIQEICEGAGVQKGSFYHFFPSKRDLVLAVIDEFADEWAHGFVAEAFDPALPP
MERIDYLVDAAYFWQKSIKQVHGRMLGCIFGNLTLEVSTQDDILRAKLLAIFSRAKSRFKETLEQAAAAGAIAPLDADRT
AEAMLAYLEGVILLAKSQNDPEVIHRLGPAIKTLRVETAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22080; Mature: 22080

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIATDTRSRIIAAAKPRFHSRSYANVGIQEICEGAGVQKGSFYHFFPSKRDLVLAVIDE
CCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHH
FADEWAHGFVAEAFDPALPPMERIDYLVDAAYFWQKSIKQVHGRMLGCIFGNLTLEVSTQ
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCH
DDILRAKLLAIFSRAKSRFKETLEQAAAAGAIAPLDADRTAEAMLAYLEGVILLAKSQND
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHEEEECCCCC
PEVIHRLGPAIKTLRVETAA
HHHHHHHCHHHHHHEECCCC
>Mature Secondary Structure
MNIATDTRSRIIAAAKPRFHSRSYANVGIQEICEGAGVQKGSFYHFFPSKRDLVLAVIDE
CCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHH
FADEWAHGFVAEAFDPALPPMERIDYLVDAAYFWQKSIKQVHGRMLGCIFGNLTLEVSTQ
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCH
DDILRAKLLAIFSRAKSRFKETLEQAAAAGAIAPLDADRTAEAMLAYLEGVILLAKSQND
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHEEEECCCCC
PEVIHRLGPAIKTLRVETAA
HHHHHHHCHHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1339371 [H]