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The map label for this gene is ymdB [C]

Identifier: 74317213

GI number: 74317213

Start: 1258219

End: 1258734

Strand: Reverse

Name: ymdB [C]

Synonym: Tbd_1195

Alternate gene names: 74317213

Gene position: 1258734-1258219 (Counterclockwise)

Preceding gene: 74317214

Following gene: 74317212

Centisome position: 43.26

GC content: 69.96

Gene sequence:

>516_bases
GTGCCGGCGCTCGTGCGCGCGGTGCAGGCCGACATCACGACGCTTGCCGTCGACGCGATCGTCAATGCCGCCAACCCTTC
GCTACTCGGTGGCGGCGGCGTCGACGGTGCTATCCACCGCGCCGCCGGTCCGCAACTTCTCGAGGCGTGCCGCGCTCTCG
GCGGCTGCGCCACCGGCGACGCGAAGCTCACCCCCGGCTACGCGCTACCCGCGCGCTTCGTCATCCACACGGTCGGACCG
GTGTGGCGCGGCGGGCTTGATGGCGAGCCCGCCCTGCTGGCGTCATGCTATCGGCGCGCGATCGAACTCGCTGCGGACCA
CGGCCTTGCGAGCATTGCGTTCCCGGCGATCAGCACAGGCGTTTATGGCTATCCCAAGAACGAGGCGGCTCGCATCGCAG
TCGCGACGGTACGCGAGACGCTGCCGCGCTTTGCCGGGATCGCCGAGATACTATTCTGCTGCCACTCGGCCGACGATCTC
GCGCGCTACGACGCGCTGCTCGCCGAGGCCTGCTGA

Upstream 100 bases:

>100_bases
CTCGACGACGCGACGCTCGCGCGCCTGCTCGCGCGCGCCGACGCACTCGGCTTCGCGCGGCAGGCCTTCGTGCGCACGCC
GCACACGGGGCACTGACGCG

Downstream 100 bases:

>100_bases
GCCGACCTGCCGCTCCGCTTGCACGCGGCGCGCCGCAACGTATAAACGAGTAAGGAGGTCCCGCCATGACGCACCTGCCG
CAGACCGTGCAGAGCTGGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MPALVRAVQADITTLAVDAIVNAANPSLLGGGGVDGAIHRAAGPQLLEACRALGGCATGDAKLTPGYALPARFVIHTVGP
VWRGGLDGEPALLASCYRRAIELAADHGLASIAFPAISTGVYGYPKNEAARIAVATVRETLPRFAGIAEILFCCHSADDL
ARYDALLAEAC

Sequences:

>Translated_171_residues
MPALVRAVQADITTLAVDAIVNAANPSLLGGGGVDGAIHRAAGPQLLEACRALGGCATGDAKLTPGYALPARFVIHTVGP
VWRGGLDGEPALLASCYRRAIELAADHGLASIAFPAISTGVYGYPKNEAARIAVATVRETLPRFAGIAEILFCCHSADDL
ARYDALLAEAC
>Mature_170_residues
PALVRAVQADITTLAVDAIVNAANPSLLGGGGVDGAIHRAAGPQLLEACRALGGCATGDAKLTPGYALPARFVIHTVGPV
WRGGLDGEPALLASCYRRAIELAADHGLASIAFPAISTGVYGYPKNEAARIAVATVRETLPRFAGIAEILFCCHSADDLA
RYDALLAEAC

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI117968621, Length=167, Percent_Identity=52.0958083832335, Blast_Score=169, Evalue=2e-42,
Organism=Homo sapiens, GI13569840, Length=148, Percent_Identity=56.0810810810811, Blast_Score=159, Evalue=1e-39,
Organism=Homo sapiens, GI207450721, Length=134, Percent_Identity=41.7910447761194, Blast_Score=107, Evalue=5e-24,
Organism=Homo sapiens, GI8923143, Length=134, Percent_Identity=41.7910447761194, Blast_Score=107, Evalue=6e-24,
Organism=Homo sapiens, GI154813199, Length=149, Percent_Identity=36.241610738255, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI20336746, Length=171, Percent_Identity=30.9941520467836, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI226371718, Length=172, Percent_Identity=30.8139534883721, Blast_Score=77, Evalue=5e-15,
Organism=Homo sapiens, GI226371716, Length=172, Percent_Identity=30.8139534883721, Blast_Score=77, Evalue=5e-15,
Organism=Homo sapiens, GI226371714, Length=172, Percent_Identity=30.8139534883721, Blast_Score=77, Evalue=5e-15,
Organism=Homo sapiens, GI226371712, Length=172, Percent_Identity=30.8139534883721, Blast_Score=77, Evalue=5e-15,
Organism=Homo sapiens, GI226371710, Length=172, Percent_Identity=30.8139534883721, Blast_Score=77, Evalue=5e-15,
Organism=Homo sapiens, GI226371706, Length=172, Percent_Identity=30.8139534883721, Blast_Score=77, Evalue=5e-15,
Organism=Homo sapiens, GI93141018, Length=171, Percent_Identity=28.6549707602339, Blast_Score=74, Evalue=8e-14,
Organism=Homo sapiens, GI93141020, Length=171, Percent_Identity=28.6549707602339, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI4758496, Length=171, Percent_Identity=28.6549707602339, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI165377137, Length=163, Percent_Identity=28.2208588957055, Blast_Score=66, Evalue=1e-11,
Organism=Escherichia coli, GI1787283, Length=173, Percent_Identity=53.757225433526, Blast_Score=177, Evalue=3e-46,
Organism=Caenorhabditis elegans, GI17538214, Length=162, Percent_Identity=46.2962962962963, Blast_Score=135, Evalue=1e-32,
Organism=Drosophila melanogaster, GI24586353, Length=159, Percent_Identity=33.3333333333333, Blast_Score=86, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 17522; Mature: 17391

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPALVRAVQADITTLAVDAIVNAANPSLLGGGGVDGAIHRAAGPQLLEACRALGGCATGD
CCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHCCCHHHHHHHHHHCCCCCCC
AKLTPGYALPARFVIHTVGPVWRGGLDGEPALLASCYRRAIELAADHGLASIAFPAISTG
CCCCCCCCCHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
VYGYPKNEAARIAVATVRETLPRFAGIAEILFCCHSADDLARYDALLAEAC
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PALVRAVQADITTLAVDAIVNAANPSLLGGGGVDGAIHRAAGPQLLEACRALGGCATGD
CHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHCCCHHHHHHHHHHCCCCCCC
AKLTPGYALPARFVIHTVGPVWRGGLDGEPALLASCYRRAIELAADHGLASIAFPAISTG
CCCCCCCCCHHHHHHHHHCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCC
VYGYPKNEAARIAVATVRETLPRFAGIAEILFCCHSADDLARYDALLAEAC
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]