| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is pstS [H]
Identifier: 74317154
GI number: 74317154
Start: 1191858
End: 1192877
Strand: Direct
Name: pstS [H]
Synonym: Tbd_1136
Alternate gene names: 74317154
Gene position: 1191858-1192877 (Clockwise)
Preceding gene: 74317153
Following gene: 74317155
Centisome position: 40.96
GC content: 63.73
Gene sequence:
>1020_bases ATGCTTACACTCAACGGACTGGCGCGCGCCGCCGCAGCCGTCTTCGCGAGCGTCGCCGTGGCGGCGAGCGCGATGGCAGC GGACGTCACCGGCGCCGGCGCGACCTTCCCCTACGCCGTCTATACCAAGTGGGCCGAGGCCTATCGTGCGGCGACCGGCA ACAAGGTCAATTACCAGGGCATCGGTTCTTCGGGCGGTGTGAAGCAGATCAAGGCGAAGACCGTCGATTTCGGCGGCACC GACGCGCCGCTCAAGGACGCCGATCTCGATGCGGTGCGCCTCGTGCAGGTGCCTACCGTCATGGGTGGCGTGACGATCGT TGCCAACGTCCCGGGAATCGACTCGGGCAAACTCAAACTCGACGGGGTGACGGCGGCGAACATCTTCCGCGGGGCGATCT ACAAGTGGAACGATCCGGCAATCCGGAAACTGAACCCGGGCGTCGCATTGCCGAATCTGGCGATTACCGTCGCGCACCGT TCCGACGGCTCGGGTACGACCTACGCCTTCACCCATTACCTCGCCAAGCAGTCGCCGCGTTTCAAAAGCGAGGTCGGGGC GGGCAATACCGTGAACTGGCCGGCCAACGCAGTCGGGGGCAAGGGCAACCCCGGCGTGGCGGCCAACGTTCAGAAGATCA AGGGCGCGATCGGGTATGTCGACATCGCCGACGCGATGAAGAACGGGATGCGTTTCGTCGCCCTGAAGAACCGCGCCGGG AACTACATCGTCCCGAGCCAGCAGTCGGTCGCCGACGCCGCCGCCGGGGCCAACTTCAAGGTCAAGGGTATGGCTCCCGA CCTGCTCGACCAGACGCACAAGAACGCCTGGCCGATCACCAGCGCGACCTATATCCTTGTCTATCAAAAAGGCGCCAGCG CTGCTAAACAGAAGGGCGTGGTCGATTTCTTCCGGTGGTCGCTCAGAAACGGCCAGAAGATGGCGACCGACCTCGGTTTC GTGCCCTTGCCGCCGAACGTCGTGCAAATGGTCGAAGCGGAGATGGGCAAGATCAAGTAA
Upstream 100 bases:
>100_bases GCGAGCGATATCGCGGTCTGAAATATATCTGTAATATTCGGCCGCTAGTATGGCGCGGTTGCCCGCGCGGCGACGTCCAA CTACTACGGAGATTCTTCAG
Downstream 100 bases:
>100_bases GGCTAGAGGCCCTCGCGCAATGCGCCGCGAGGGTATCTACGCAAGCTGCTGTCGCCGGGCGGCTGCTTGCGTAGATAAAA TTGATCCATAGGCATTCCAC
Product: periplasmic phosphate binding protein
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: PBP [H]
Number of amino acids: Translated: 339; Mature: 339
Protein sequence:
>339_residues MLTLNGLARAAAAVFASVAVAASAMAADVTGAGATFPYAVYTKWAEAYRAATGNKVNYQGIGSSGGVKQIKAKTVDFGGT DAPLKDADLDAVRLVQVPTVMGGVTIVANVPGIDSGKLKLDGVTAANIFRGAIYKWNDPAIRKLNPGVALPNLAITVAHR SDGSGTTYAFTHYLAKQSPRFKSEVGAGNTVNWPANAVGGKGNPGVAANVQKIKGAIGYVDIADAMKNGMRFVALKNRAG NYIVPSQQSVADAAAGANFKVKGMAPDLLDQTHKNAWPITSATYILVYQKGASAAKQKGVVDFFRWSLRNGQKMATDLGF VPLPPNVVQMVEAEMGKIK
Sequences:
>Translated_339_residues MLTLNGLARAAAAVFASVAVAASAMAADVTGAGATFPYAVYTKWAEAYRAATGNKVNYQGIGSSGGVKQIKAKTVDFGGT DAPLKDADLDAVRLVQVPTVMGGVTIVANVPGIDSGKLKLDGVTAANIFRGAIYKWNDPAIRKLNPGVALPNLAITVAHR SDGSGTTYAFTHYLAKQSPRFKSEVGAGNTVNWPANAVGGKGNPGVAANVQKIKGAIGYVDIADAMKNGMRFVALKNRAG NYIVPSQQSVADAAAGANFKVKGMAPDLLDQTHKNAWPITSATYILVYQKGASAAKQKGVVDFFRWSLRNGQKMATDLGF VPLPPNVVQMVEAEMGKIK >Mature_339_residues MLTLNGLARAAAAVFASVAVAASAMAADVTGAGATFPYAVYTKWAEAYRAATGNKVNYQGIGSSGGVKQIKAKTVDFGGT DAPLKDADLDAVRLVQVPTVMGGVTIVANVPGIDSGKLKLDGVTAANIFRGAIYKWNDPAIRKLNPGVALPNLAITVAHR SDGSGTTYAFTHYLAKQSPRFKSEVGAGNTVNWPANAVGGKGNPGVAANVQKIKGAIGYVDIADAMKNGMRFVALKNRAG NYIVPSQQSVADAAAGANFKVKGMAPDLLDQTHKNAWPITSATYILVYQKGASAAKQKGVVDFFRWSLRNGQKMATDLGF VPLPPNVVQMVEAEMGKIK
Specific function: Part of the ABC transporter complex pstSACB involved in phosphate import [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
Organism=Escherichia coli, GI2367271, Length=327, Percent_Identity=49.5412844036697, Blast_Score=308, Evalue=4e-85,
Paralogues:
None
Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005673 - InterPro: IPR006059 [H]
Pfam domain/function: PF01547 SBP_bac_1 [H]
EC number: NA
Molecular weight: Translated: 35344; Mature: 35344
Theoretical pI: Translated: 10.41; Mature: 10.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTLNGLARAAAAVFASVAVAASAMAADVTGAGATFPYAVYTKWAEAYRAATGNKVNYQG CEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE IGSSGGVKQIKAKTVDFGGTDAPLKDADLDAVRLVQVPTVMGGVTIVANVPGIDSGKLKL CCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCHHHCCEEEEEECCCCCCCCEEE DGVTAANIFRGAIYKWNDPAIRKLNPGVALPNLAITVAHRSDGSGTTYAFTHYLAKQSPR CCCCHHHHHHCCEEECCCCCCEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCC FKSEVGAGNTVNWPANAVGGKGNPGVAANVQKIKGAIGYVDIADAMKNGMRFVALKNRAG HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEHHHHHHCCEEEEEEECCCC NYIVPSQQSVADAAAGANFKVKGMAPDLLDQTHKNAWPITSATYILVYQKGASAAKQKGV CEECCCCHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHCCH VDFFRWSLRNGQKMATDLGFVPLPPNVVQMVEAEMGKIK HHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure MLTLNGLARAAAAVFASVAVAASAMAADVTGAGATFPYAVYTKWAEAYRAATGNKVNYQG CEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE IGSSGGVKQIKAKTVDFGGTDAPLKDADLDAVRLVQVPTVMGGVTIVANVPGIDSGKLKL CCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEECCHHHCCEEEEEECCCCCCCCEEE DGVTAANIFRGAIYKWNDPAIRKLNPGVALPNLAITVAHRSDGSGTTYAFTHYLAKQSPR CCCCHHHHHHCCEEECCCCCCEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCC FKSEVGAGNTVNWPANAVGGKGNPGVAANVQKIKGAIGYVDIADAMKNGMRFVALKNRAG HHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEHHHHHHCCEEEEEEECCCC NYIVPSQQSVADAAAGANFKVKGMAPDLLDQTHKNAWPITSATYILVYQKGASAAKQKGV CEECCCCHHHHHHHCCCCEEEECCCHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHCCH VDFFRWSLRNGQKMATDLGFVPLPPNVVQMVEAEMGKIK HHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 6321434; 6365894; 7686882; 9278503; 9298646; 2215649; 9228942; 9671506 [H]