| Definition | Thiobacillus denitrificans ATCC 25259 chromosome, complete genome. |
|---|---|
| Accession | NC_007404 |
| Length | 2,909,809 |
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The map label for this gene is cotA [H]
Identifier: 74317090
GI number: 74317090
Start: 1130477
End: 1132597
Strand: Reverse
Name: cotA [H]
Synonym: Tbd_1072
Alternate gene names: 74317090
Gene position: 1132597-1130477 (Counterclockwise)
Preceding gene: 74317091
Following gene: 74317089
Centisome position: 38.92
GC content: 66.43
Gene sequence:
>2121_bases ATGCTCGGGGGCGTCGCAGCGGAAGGCTTCGCGCGGTTCATCCGATCGGCAAAGGGGGGCAAGCGTATGGTCACACGTCG CGCATTCCTGAAATACACCGCAAGCACCGTATTGACCTGGTTCGCGTTCGACCGATTCGGGATCCGCAAGGCGATCGCTG ACATCCCCGGGGGATCGCTCGACCCGCGCGGGGTTCCAAAATTCGAAACGCCGCTGCTGATCCCGCCCGTGATGCCGCGA GCAGCGAAGATCGCTCGCGCCGGCAAGAACGTCGACTATTACGAGATCTCGATGAAGCCCCTCCATCAGCAGATCCTCCC CGTAGGCCTGCCCGCCACGCCGGTCTGGGGCTACGGCGCGGTGACGTCCGCGAGCAAGAAAGGATTGCTGCTGCACAATG CGCCGTCGCTGACGATCGAGGCCAAGTGGGATACGCCGGTGCGCGTGAAGTGGATCAACGATCTCAAGGACGCGGCGGGC AACTTCGTGCCCCATCTGCTGCCCGTCGACCCGACGCTGCACTGGGCGAACCCGCCCGGCGGCGCAACAGGACGCGACAC GCGACCGACTTTCACGGAGACGCCCGGCCCCTATGACGGGCCGGTGCCCATCGTCACGCACGTGCATGGTGCGGCGGGCG TGGGTGACGAGAGCGACGGCTACGCCGAAGCCTGGTATCTGCCCGCCGCGGGCGGCATCCCGCCGGGTTTTGCGACCGAG GGTAGCTGGTACGGCTTCTTCGCCGACAAGGCCGCCGCCAAGTTCGGGGTCACCTGGGGTCCGGGCTACGCGGTCTTCCA GTATCCGAACAAGAATCGCGCCTCGACCATCTGGTACCACGACCACACCCTGGGCATGACCCGCCTCAACGTATACGCCG GCCCGGCCGGTTTCTACATCATCCGCGGCGGCCCCGCGGGCGATGACACCGTGATCGACAGCCGAACCGGGACGCCCGCC ATACTGCCGGGACCGGCCCCGCGGGAGCACGACAAATTCCCGCCCAACAAGAGCTATCGCGAGATCCCGATGGCGATCCA GGATCGTTCGTTCAACGCCGACGGCTCGCTGTTCTATCCGGACACGCGCACGTTTTTCGACGGGGTCGCGGGCCCCTTCG TTCCGGAGTCCGACCTCTCGCCGATCTGGAACCCCGAGTTCTTCGGCAACATGATGACGGTCAACGGCAACACCTGGCCT TTCCAGACCGTCGAGCAGGCGCGCTACCGCTTCCGCTTCCTGAACGGTTGCCAGTCGCGCTTCCTGATCCTGGACTTCGG CAACATTCCGGGCGTGGAAGTCTGGCAGATCGGCAACGAGGGCGGCTTCCTCGCCGCACCCGTGAACCTCACCGCGATCA ACGACAACACGCTGCTGATGGGCCTGGCCGAGCGTGCGGACGTGATCGTCGATTTCACCAACGTTCCGCCTGGCCATTAC GTGCTCGGCAACGTCGGGCCGGACGAGCCTTTTCCGGGTCTGGAAGACGAATTCGACGCCGCCGACCCCGACACGACCGG GCAAATCATGCAGTTCCGCGTCGCGCCGGCGGCGAGGCCCGATCCGAGCACGCCGCCCGCGTTCCTGCAGTTGCCGGCGA TCACGCCGCTGCCGCCCGAAACCGTCACCCGCCCGTTGGCGTTGCTCGAGGAGATGTCGGCGGCCTTCGAGGACGCGCCG GTCGAGGCGCTGCTTGGCACCGTGGCCTTCGACGGCAATGGCACGGGCGTGTGCACCGGGCGCCTGTGGATGGAGCCGGT CAGCGAAAACCCGGAAACGGGCGCCACCGAGGTTTGGGAAATCTACAACGCCACCGGCGACGCCCACCCGATCCACATCC ACGAGGTCGCGTTCGAAGTCGTCAATCGGCAGGATATCGTCGTGGACGAGGCCGAGGGCAGGGTCGCGCTTGCTCCCGGT TCCGAGCCTGCGCCGCCCGCAGCCTGGGAGACAGGCTTCAAGGACACCGTCATCGCTTATCCCGGGCACGTCACGCGCGT GCGGGCGCGGTTCAACACGCCCGGCCAGTTCACCTGGCACTGTCACATCCTCGAGCACGAGGACAACGAGATGATGCGGC CGTTTCGCGTCGGTCCGGTTCGGCCTGGTCAGCCCGGTTAG
Upstream 100 bases:
>100_bases GACGGCCGGGGCTCGCCCCTTGGCAGACCCCCCCAAGCCGACCTAAGAATAGATTTACACAATAAAAATCGGCCTGACGG CGACGACTGGCCCGTGCTGA
Downstream 100 bases:
>100_bases GAAGGTCGGGGAGGCGAGACCCGCTTCGCGCATTTGGCCTACCCGATCCCGGTCCACGTCGCGCAATCACGCATCACCTG TTTCCGGCTTTCAGCCGAAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 706; Mature: 706
Protein sequence:
>706_residues MLGGVAAEGFARFIRSAKGGKRMVTRRAFLKYTASTVLTWFAFDRFGIRKAIADIPGGSLDPRGVPKFETPLLIPPVMPR AAKIARAGKNVDYYEISMKPLHQQILPVGLPATPVWGYGAVTSASKKGLLLHNAPSLTIEAKWDTPVRVKWINDLKDAAG NFVPHLLPVDPTLHWANPPGGATGRDTRPTFTETPGPYDGPVPIVTHVHGAAGVGDESDGYAEAWYLPAAGGIPPGFATE GSWYGFFADKAAAKFGVTWGPGYAVFQYPNKNRASTIWYHDHTLGMTRLNVYAGPAGFYIIRGGPAGDDTVIDSRTGTPA ILPGPAPREHDKFPPNKSYREIPMAIQDRSFNADGSLFYPDTRTFFDGVAGPFVPESDLSPIWNPEFFGNMMTVNGNTWP FQTVEQARYRFRFLNGCQSRFLILDFGNIPGVEVWQIGNEGGFLAAPVNLTAINDNTLLMGLAERADVIVDFTNVPPGHY VLGNVGPDEPFPGLEDEFDAADPDTTGQIMQFRVAPAARPDPSTPPAFLQLPAITPLPPETVTRPLALLEEMSAAFEDAP VEALLGTVAFDGNGTGVCTGRLWMEPVSENPETGATEVWEIYNATGDAHPIHIHEVAFEVVNRQDIVVDEAEGRVALAPG SEPAPPAAWETGFKDTVIAYPGHVTRVRARFNTPGQFTWHCHILEHEDNEMMRPFRVGPVRPGQPG
Sequences:
>Translated_706_residues MLGGVAAEGFARFIRSAKGGKRMVTRRAFLKYTASTVLTWFAFDRFGIRKAIADIPGGSLDPRGVPKFETPLLIPPVMPR AAKIARAGKNVDYYEISMKPLHQQILPVGLPATPVWGYGAVTSASKKGLLLHNAPSLTIEAKWDTPVRVKWINDLKDAAG NFVPHLLPVDPTLHWANPPGGATGRDTRPTFTETPGPYDGPVPIVTHVHGAAGVGDESDGYAEAWYLPAAGGIPPGFATE GSWYGFFADKAAAKFGVTWGPGYAVFQYPNKNRASTIWYHDHTLGMTRLNVYAGPAGFYIIRGGPAGDDTVIDSRTGTPA ILPGPAPREHDKFPPNKSYREIPMAIQDRSFNADGSLFYPDTRTFFDGVAGPFVPESDLSPIWNPEFFGNMMTVNGNTWP FQTVEQARYRFRFLNGCQSRFLILDFGNIPGVEVWQIGNEGGFLAAPVNLTAINDNTLLMGLAERADVIVDFTNVPPGHY VLGNVGPDEPFPGLEDEFDAADPDTTGQIMQFRVAPAARPDPSTPPAFLQLPAITPLPPETVTRPLALLEEMSAAFEDAP VEALLGTVAFDGNGTGVCTGRLWMEPVSENPETGATEVWEIYNATGDAHPIHIHEVAFEVVNRQDIVVDEAEGRVALAPG SEPAPPAAWETGFKDTVIAYPGHVTRVRARFNTPGQFTWHCHILEHEDNEMMRPFRVGPVRPGQPG >Mature_706_residues MLGGVAAEGFARFIRSAKGGKRMVTRRAFLKYTASTVLTWFAFDRFGIRKAIADIPGGSLDPRGVPKFETPLLIPPVMPR AAKIARAGKNVDYYEISMKPLHQQILPVGLPATPVWGYGAVTSASKKGLLLHNAPSLTIEAKWDTPVRVKWINDLKDAAG NFVPHLLPVDPTLHWANPPGGATGRDTRPTFTETPGPYDGPVPIVTHVHGAAGVGDESDGYAEAWYLPAAGGIPPGFATE GSWYGFFADKAAAKFGVTWGPGYAVFQYPNKNRASTIWYHDHTLGMTRLNVYAGPAGFYIIRGGPAGDDTVIDSRTGTPA ILPGPAPREHDKFPPNKSYREIPMAIQDRSFNADGSLFYPDTRTFFDGVAGPFVPESDLSPIWNPEFFGNMMTVNGNTWP FQTVEQARYRFRFLNGCQSRFLILDFGNIPGVEVWQIGNEGGFLAAPVNLTAINDNTLLMGLAERADVIVDFTNVPPGHY VLGNVGPDEPFPGLEDEFDAADPDTTGQIMQFRVAPAARPDPSTPPAFLQLPAITPLPPETVTRPLALLEEMSAAFEDAP VEALLGTVAFDGNGTGVCTGRLWMEPVSENPETGATEVWEIYNATGDAHPIHIHEVAFEVVNRQDIVVDEAEGRVALAPG SEPAPPAAWETGFKDTVIAYPGHVTRVRARFNTPGQFTWHCHILEHEDNEMMRPFRVGPVRPGQPG
Specific function: Involved in brown pigmentation during sporogenesis [H]
COG id: COG2132
COG function: function code Q; Putative multicopper oxidases
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To S.antibioticus phenoxazinone synthase (phsA) [H]
Homologues:
Organism=Escherichia coli, GI1786314, Length=452, Percent_Identity=25.2212389380531, Blast_Score=98, Evalue=2e-21,
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001117 - InterPro: IPR011706 - InterPro: IPR011707 - InterPro: IPR008972 [H]
Pfam domain/function: PF00394 Cu-oxidase; PF07731 Cu-oxidase_2; PF07732 Cu-oxidase_3 [H]
EC number: NA
Molecular weight: Translated: 76682; Mature: 76682
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGGVAAEGFARFIRSAKGGKRMVTRRAFLKYTASTVLTWFAFDRFGIRKAIADIPGGSL CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC DPRGVPKFETPLLIPPVMPRAAKIARAGKNVDYYEISMKPLHQQILPVGLPATPVWGYGA CCCCCCCCCCCEECCCCCCHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCCCCCCCCC VTSASKKGLLLHNAPSLTIEAKWDTPVRVKWINDLKDAAGNFVPHLLPVDPTLHWANPPG CCCCCCCCEEEECCCCEEEEECCCCCEEEEEHHHHHHHHCCCCCCEEECCCEEEECCCCC GATGRDTRPTFTETPGPYDGPVPIVTHVHGAAGVGDESDGYAEAWYLPAAGGIPPGFATE CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC GSWYGFFADKAAAKFGVTWGPGYAVFQYPNKNRASTIWYHDHTLGMTRLNVYAGPAGFYI CCEEEEECCCHHHHCCCEECCCEEEEECCCCCCCEEEEEECCCCCEEEEEEEECCCCEEE IRGGPAGDDTVIDSRTGTPAILPGPAPREHDKFPPNKSYREIPMAIQDRSFNADGSLFYP EECCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCHHHCCEEEECCCCCCCCCEECC DTRTFFDGVAGPFVPESDLSPIWNPEFFGNMMTVNGNTWPFQTVEQARYRFRFLNGCQSR CCHHHHHCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCE FLILDFGNIPGVEVWQIGNEGGFLAAPVNLTAINDNTLLMGLAERADVIVDFTNVPPGHY EEEEECCCCCCEEEEEECCCCCEEEECEEEEEECCCEEEEEECCCCCEEEEECCCCCCCE VLGNVGPDEPFPGLEDEFDAADPDTTGQIMQFRVAPAARPDPSTPPAFLQLPAITPLPPE EECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCCCCHH TVTRPLALLEEMSAAFEDAPVEALLGTVAFDGNGTGVCTGRLWMEPVSENPETGATEVWE HHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCHHHHH IYNATGDAHPIHIHEVAFEVVNRQDIVVDEAEGRVALAPGSEPAPPAAWETGFKDTVIAY HHCCCCCCCCEEHHHHHHHHHCCCEEEEECCCCEEEECCCCCCCCCCHHHCCCCCEEEEC PGHVTRVRARFNTPGQFTWHCHILEHEDNEMMRPFRVGPVRPGQPG CCCEEEEEEECCCCCCEEEEEEEEEECCCCCCCCEECCCCCCCCCC >Mature Secondary Structure MLGGVAAEGFARFIRSAKGGKRMVTRRAFLKYTASTVLTWFAFDRFGIRKAIADIPGGSL CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC DPRGVPKFETPLLIPPVMPRAAKIARAGKNVDYYEISMKPLHQQILPVGLPATPVWGYGA CCCCCCCCCCCEECCCCCCHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCCCCCCCCC VTSASKKGLLLHNAPSLTIEAKWDTPVRVKWINDLKDAAGNFVPHLLPVDPTLHWANPPG CCCCCCCCEEEECCCCEEEEECCCCCEEEEEHHHHHHHHCCCCCCEEECCCEEEECCCCC GATGRDTRPTFTETPGPYDGPVPIVTHVHGAAGVGDESDGYAEAWYLPAAGGIPPGFATE CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCCCC GSWYGFFADKAAAKFGVTWGPGYAVFQYPNKNRASTIWYHDHTLGMTRLNVYAGPAGFYI CCEEEEECCCHHHHCCCEECCCEEEEECCCCCCCEEEEEECCCCCEEEEEEEECCCCEEE IRGGPAGDDTVIDSRTGTPAILPGPAPREHDKFPPNKSYREIPMAIQDRSFNADGSLFYP EECCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCCHHHCCEEEECCCCCCCCCEECC DTRTFFDGVAGPFVPESDLSPIWNPEFFGNMMTVNGNTWPFQTVEQARYRFRFLNGCQSR CCHHHHHCCCCCCCCCCCCCCCCCHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCE FLILDFGNIPGVEVWQIGNEGGFLAAPVNLTAINDNTLLMGLAERADVIVDFTNVPPGHY EEEEECCCCCCEEEEEECCCCCEEEECEEEEEECCCEEEEEECCCCCEEEEECCCCCCCE VLGNVGPDEPFPGLEDEFDAADPDTTGQIMQFRVAPAARPDPSTPPAFLQLPAITPLPPE EECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEECCCCCCCCHH TVTRPLALLEEMSAAFEDAPVEALLGTVAFDGNGTGVCTGRLWMEPVSENPETGATEVWE HHHHHHHHHHHHHHHHCCCCHHHEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCHHHHH IYNATGDAHPIHIHEVAFEVVNRQDIVVDEAEGRVALAPGSEPAPPAAWETGFKDTVIAY HHCCCCCCCCEEHHHHHHHHHCCCEEEEECCCCEEEECCCCCCCCCCHHHCCCCCEEEEC PGHVTRVRARFNTPGQFTWHCHILEHEDNEMMRPFRVGPVRPGQPG CCCEEEEEEECCCCCCEEEEEEEEEECCCCCCCCEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8969499; 9455482; 9384377; 2821284; 3135411 [H]